data_3PWI # _model_server_result.job_id nnYsePeh6WtGRtso-2yntg _model_server_result.datetime_utc '2024-11-15 05:27:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3pwi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":448}' # _entry.id 3PWI # _exptl.entry_id 3PWI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 190.108 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,3-DIHYDROXY-5-OXO-HEXANEDIOATE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.74 _cell.angle_gamma 90 _cell.entry_id 3PWI _cell.length_a 150.784 _cell.length_b 128.925 _cell.length_c 71.419 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PWI _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1,2 B,F,G,H,J 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -8.382025 0 70.92542 3 'crystal symmetry operation' 2_456 -x-1,y,-z+1 -1 0 0 0 1 0 0 0 -1 -159.166025 0 70.92542 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 235 A ASP 235 1_555 C MG MG . A MG 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc2 A OD2 ASP 235 A ASP 235 1_555 C MG MG . A MG 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.907 ? metalc ? metalc3 A OE2 GLU 260 A GLU 260 1_555 C MG MG . A MG 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.729 ? metalc ? metalc4 A OD1 ASN 289 A ASN 289 1_555 C MG MG . A MG 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc5 C MG MG . A MG 447 1_555 D O6B GLR . A GLR 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.621 ? metalc ? metalc6 C MG MG . A MG 447 1_555 D O6A GLR . A GLR 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.643 ? metalc ? metalc7 B OD1 ASP 235 B ASP 235 1_555 F MG MG . B MG 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc8 B OD2 ASP 235 B ASP 235 1_555 F MG MG . B MG 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.948 ? metalc ? metalc9 B OE2 GLU 260 B GLU 260 1_555 F MG MG . B MG 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.659 ? metalc ? metalc10 B OD1 ASN 289 B ASN 289 1_555 F MG MG . B MG 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc11 F MG MG . B MG 447 1_555 G O6B GLR . B GLR 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? metalc ? metalc12 F MG MG . B MG 447 1_555 G O6A GLR . B GLR 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.668 ? # _chem_comp.formula 'C6 H6 O7 -2' _chem_comp.formula_weight 190.108 _chem_comp.id GLR _chem_comp.mon_nstd_flag . _chem_comp.name 2,3-DIHYDROXY-5-OXO-HEXANEDIOATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1B C1 GLR doub 102 n n O1A C1 GLR sing 103 n n C1 C2 GLR sing 104 n n C2 O2 GLR sing 105 n n C2 C3 GLR sing 106 n n C2 H21 GLR sing 107 n n O2 HO21 GLR sing 108 n n C3 O3 GLR sing 109 n n C3 C4 GLR sing 110 n n C3 H31 GLR sing 111 n n O3 HO31 GLR sing 112 n n C4 C5 GLR sing 113 n n C4 H41 GLR sing 114 n n C4 H42 GLR sing 115 n n O5 C5 GLR doub 116 n n C5 C6 GLR sing 117 n n C6 O6A GLR doub 118 n n C6 O6B GLR sing 119 n n # _atom_sites.entry_id 3PWI _atom_sites.fract_transf_matrix[1][1] 0.006632 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000784 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007756 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014099 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 447 1 MG MG . D 3 GLR A 1 448 1 GLR GLR . E 4 GOL A 1 449 2 GOL GOL . F 2 MG B 1 447 2 MG MG . G 3 GLR B 1 448 2 GLR GLR . H 4 GOL B 1 449 1 GOL GOL . I 5 HOH A 1 450 1 HOH HOH . I 5 HOH A 2 451 6 HOH HOH . I 5 HOH A 3 452 7 HOH HOH . I 5 HOH A 4 453 9 HOH HOH . I 5 HOH A 5 454 12 HOH HOH . I 5 HOH A 6 455 14 HOH HOH . I 5 HOH A 7 456 17 HOH HOH . I 5 HOH A 8 457 18 HOH HOH . I 5 HOH A 9 458 21 HOH HOH . I 5 HOH A 10 459 29 HOH HOH . I 5 HOH A 11 460 30 HOH HOH . I 5 HOH A 12 461 37 HOH HOH . I 5 HOH A 13 462 42 HOH HOH . I 5 HOH A 14 463 43 HOH HOH . I 5 HOH A 15 464 45 HOH HOH . I 5 HOH A 16 465 47 HOH HOH . I 5 HOH A 17 466 52 HOH HOH . I 5 HOH A 18 467 62 HOH HOH . I 5 HOH A 19 468 63 HOH HOH . I 5 HOH A 20 469 66 HOH HOH . I 5 HOH A 21 470 69 HOH HOH . I 5 HOH A 22 471 71 HOH HOH . I 5 HOH A 23 472 72 HOH HOH . I 5 HOH A 24 473 78 HOH HOH . I 5 HOH A 25 474 85 HOH HOH . I 5 HOH A 26 475 88 HOH HOH . I 5 HOH A 27 476 94 HOH HOH . I 5 HOH A 28 477 96 HOH HOH . I 5 HOH A 29 478 97 HOH HOH . I 5 HOH A 30 479 99 HOH HOH . I 5 HOH A 31 480 101 HOH HOH . I 5 HOH A 32 481 104 HOH HOH . I 5 HOH A 33 482 106 HOH HOH . I 5 HOH A 34 483 109 HOH HOH . I 5 HOH A 35 484 113 HOH HOH . I 5 HOH A 36 485 116 HOH HOH . I 5 HOH A 37 486 119 HOH HOH . I 5 HOH A 38 487 120 HOH HOH . I 5 HOH A 39 488 121 HOH HOH . I 5 HOH A 40 489 122 HOH HOH . I 5 HOH A 41 490 123 HOH HOH . I 5 HOH A 42 491 125 HOH HOH . I 5 HOH A 43 492 127 HOH HOH . I 5 HOH A 44 493 128 HOH HOH . I 5 HOH A 45 494 129 HOH HOH . I 5 HOH A 46 495 131 HOH HOH . I 5 HOH A 47 496 134 HOH HOH . I 5 HOH A 48 497 147 HOH HOH . I 5 HOH A 49 498 148 HOH HOH . I 5 HOH A 50 499 149 HOH HOH . I 5 HOH A 51 500 153 HOH HOH . I 5 HOH A 52 501 162 HOH HOH . I 5 HOH A 53 502 167 HOH HOH . J 5 HOH B 1 450 2 HOH HOH . J 5 HOH B 2 451 3 HOH HOH . J 5 HOH B 3 452 4 HOH HOH . J 5 HOH B 4 453 5 HOH HOH . J 5 HOH B 5 454 8 HOH HOH . J 5 HOH B 6 455 10 HOH HOH . J 5 HOH B 7 456 11 HOH HOH . J 5 HOH B 8 457 13 HOH HOH . J 5 HOH B 9 458 15 HOH HOH . J 5 HOH B 10 459 16 HOH HOH . J 5 HOH B 11 460 19 HOH HOH . J 5 HOH B 12 461 20 HOH HOH . J 5 HOH B 13 462 22 HOH HOH . J 5 HOH B 14 463 23 HOH HOH . J 5 HOH B 15 464 24 HOH HOH . J 5 HOH B 16 465 25 HOH HOH . J 5 HOH B 17 466 26 HOH HOH . J 5 HOH B 18 467 27 HOH HOH . J 5 HOH B 19 468 28 HOH HOH . J 5 HOH B 20 469 31 HOH HOH . J 5 HOH B 21 470 32 HOH HOH . J 5 HOH B 22 471 33 HOH HOH . J 5 HOH B 23 472 34 HOH HOH . J 5 HOH B 24 473 35 HOH HOH . J 5 HOH B 25 474 36 HOH HOH . J 5 HOH B 26 475 38 HOH HOH . J 5 HOH B 27 476 40 HOH HOH . J 5 HOH B 28 477 41 HOH HOH . J 5 HOH B 29 478 44 HOH HOH . J 5 HOH B 30 479 48 HOH HOH . J 5 HOH B 31 480 49 HOH HOH . J 5 HOH B 32 481 50 HOH HOH . J 5 HOH B 33 482 51 HOH HOH . J 5 HOH B 34 483 53 HOH HOH . J 5 HOH B 35 484 54 HOH HOH . J 5 HOH B 36 485 55 HOH HOH . J 5 HOH B 37 486 56 HOH HOH . J 5 HOH B 38 487 57 HOH HOH . J 5 HOH B 39 488 58 HOH HOH . J 5 HOH B 40 489 59 HOH HOH . J 5 HOH B 41 490 60 HOH HOH . J 5 HOH B 42 491 61 HOH HOH . J 5 HOH B 43 492 64 HOH HOH . J 5 HOH B 44 493 65 HOH HOH . J 5 HOH B 45 494 67 HOH HOH . J 5 HOH B 46 495 68 HOH HOH . J 5 HOH B 47 496 70 HOH HOH . J 5 HOH B 48 497 73 HOH HOH . J 5 HOH B 49 498 74 HOH HOH . J 5 HOH B 50 499 75 HOH HOH . J 5 HOH B 51 500 76 HOH HOH . J 5 HOH B 52 501 77 HOH HOH . J 5 HOH B 53 502 79 HOH HOH . J 5 HOH B 54 503 80 HOH HOH . J 5 HOH B 55 504 81 HOH HOH . J 5 HOH B 56 505 82 HOH HOH . J 5 HOH B 57 506 83 HOH HOH . J 5 HOH B 58 507 84 HOH HOH . J 5 HOH B 59 508 86 HOH HOH . J 5 HOH B 60 509 87 HOH HOH . J 5 HOH B 61 510 89 HOH HOH . J 5 HOH B 62 511 90 HOH HOH . J 5 HOH B 63 512 91 HOH HOH . J 5 HOH B 64 513 92 HOH HOH . J 5 HOH B 65 514 93 HOH HOH . J 5 HOH B 66 515 95 HOH HOH . J 5 HOH B 67 516 98 HOH HOH . J 5 HOH B 68 517 100 HOH HOH . J 5 HOH B 69 518 103 HOH HOH . J 5 HOH B 70 519 105 HOH HOH . J 5 HOH B 71 520 107 HOH HOH . J 5 HOH B 72 521 108 HOH HOH . J 5 HOH B 73 522 110 HOH HOH . J 5 HOH B 74 523 115 HOH HOH . J 5 HOH B 75 524 117 HOH HOH . J 5 HOH B 76 525 118 HOH HOH . J 5 HOH B 77 526 124 HOH HOH . J 5 HOH B 78 527 126 HOH HOH . J 5 HOH B 79 528 130 HOH HOH . J 5 HOH B 80 529 132 HOH HOH . J 5 HOH B 81 530 133 HOH HOH . J 5 HOH B 82 531 135 HOH HOH . J 5 HOH B 83 532 136 HOH HOH . J 5 HOH B 84 533 137 HOH HOH . J 5 HOH B 85 534 138 HOH HOH . J 5 HOH B 86 535 141 HOH HOH . J 5 HOH B 87 536 142 HOH HOH . J 5 HOH B 88 537 143 HOH HOH . J 5 HOH B 89 538 144 HOH HOH . J 5 HOH B 90 539 145 HOH HOH . J 5 HOH B 91 540 146 HOH HOH . J 5 HOH B 92 541 150 HOH HOH . J 5 HOH B 93 542 151 HOH HOH . J 5 HOH B 94 543 152 HOH HOH . J 5 HOH B 95 544 161 HOH HOH . J 5 HOH B 96 545 163 HOH HOH . J 5 HOH B 97 546 164 HOH HOH . J 5 HOH B 98 547 165 HOH HOH . J 5 HOH B 99 548 166 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1B GLR . . . G 3 -62.29 17.065 13.684 1 42.48 ? O1B GLR 448 B 1 HETATM 2 O O1A GLR . . . G 3 -62.28 15.302 12.316 1 44.13 ? O1A GLR 448 B 1 HETATM 3 C C1 GLR . . . G 3 -62.404 15.817 13.458 1 48.02 ? C1 GLR 448 B 1 HETATM 4 C C2 GLR . . . G 3 -63.052 14.946 14.532 1 46.76 ? C2 GLR 448 B 1 HETATM 5 O O2 GLR . . . G 3 -63.225 13.587 14.06 1 49.44 ? O2 GLR 448 B 1 HETATM 6 C C3 GLR . . . G 3 -64.403 15.525 14.91 1 48.02 ? C3 GLR 448 B 1 HETATM 7 O O3 GLR . . . G 3 -65.174 15.609 13.699 1 44.89 ? O3 GLR 448 B 1 HETATM 8 C C4 GLR . . . G 3 -65.116 14.729 16.028 1 50.25 ? C4 GLR 448 B 1 HETATM 9 O O5 GLR . . . G 3 -63.488 15.463 17.734 1 48.54 ? O5 GLR 448 B 1 HETATM 10 C C5 GLR . . . G 3 -64.341 14.598 17.353 1 48.94 ? C5 GLR 448 B 1 HETATM 11 C C6 GLR . . . G 3 -64.684 13.35 18.121 1 46.59 ? C6 GLR 448 B 1 HETATM 12 O O6A GLR . . . G 3 -65.473 12.545 17.562 1 48.04 ? O6A GLR 448 B 1 HETATM 13 O O6B GLR . . . G 3 -64.073 12.984 19.159 1 39.1 ? O6B GLR 448 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #