data_3PWP
#
_model_server_result.job_id            21ODZ6p7ZAi-0uEcXmmCoA 
_model_server_result.datetime_utc      '2024-11-02 13:36:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3pwp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":247}' 
#
_entry.id    3PWP 
#
_exptl.entry_id    3PWP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.07 
_cell.angle_gamma         90 
_cell.entry_id            3PWP 
_cell.length_a            224.006 
_cell.length_b            49.065 
_cell.length_c            93.711 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3PWP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 F N N 
? 6 G N N 
? 6 H N N 
? 6 I N N 
? 6 J N N 
? 6 L N N 
? 6 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 101 A CYS 101 1_555 A SG CYS 164 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? 
disulf ? disulf2 A SG CYS 203 A CYS 203 1_555 A SG CYS 259 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf3 B SG CYS 26 B CYS 25 1_555 B SG CYS 81 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf4 D SG CYS 22 D CYS 22 1_555 D SG CYS 88 D CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
disulf ? disulf5 D SG CYS 133 D CYS 139 1_555 D SG CYS 183 D CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
disulf ? disulf6 E SG CYS 23 E CYS 23 1_555 E SG CYS 91 E CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
disulf ? disulf7 E SG CYS 146 E CYS 147 1_555 E SG CYS 211 E CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     3PWP 
_atom_sites.fract_transf_matrix[1][1]    0.004464 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000006 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020381 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010671 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 6 GOL A 1 276 2 GOL GOL . 
G 6 GOL A 1 277 4 GOL GOL . 
H 6 GOL A 1 278 5 GOL GOL . 
I 6 GOL A 1 279 6 GOL GOL . 
J 6 GOL A 1 280 7 GOL GOL . 
K 7 SO4 B 1 100 8 SO4 SO4 . 
L 6 GOL E 1 247 1 GOL GOL . 
M 6 GOL E 1 248 3 GOL GOL . 
N 8 HOH A 1 281 8 HOH HOH . 
N 8 HOH A 2 282 12 HOH HOH . 
N 8 HOH A 3 283 15 HOH HOH . 
N 8 HOH A 4 284 17 HOH HOH . 
N 8 HOH A 5 285 19 HOH HOH . 
N 8 HOH A 6 286 26 HOH HOH . 
N 8 HOH A 7 287 27 HOH HOH . 
N 8 HOH A 8 288 28 HOH HOH . 
N 8 HOH A 9 289 29 HOH HOH . 
N 8 HOH A 10 290 30 HOH HOH . 
N 8 HOH A 11 291 34 HOH HOH . 
N 8 HOH A 12 292 36 HOH HOH . 
N 8 HOH A 13 293 38 HOH HOH . 
N 8 HOH A 14 294 42 HOH HOH . 
N 8 HOH A 15 295 43 HOH HOH . 
N 8 HOH A 16 296 46 HOH HOH . 
N 8 HOH A 17 297 55 HOH HOH . 
N 8 HOH A 18 298 56 HOH HOH . 
N 8 HOH A 19 299 60 HOH HOH . 
O 8 HOH B 1 101 4 HOH HOH . 
O 8 HOH B 2 102 6 HOH HOH . 
O 8 HOH B 3 103 10 HOH HOH . 
O 8 HOH B 4 104 13 HOH HOH . 
O 8 HOH B 5 105 16 HOH HOH . 
O 8 HOH B 6 106 20 HOH HOH . 
O 8 HOH B 7 107 35 HOH HOH . 
O 8 HOH B 8 108 44 HOH HOH . 
O 8 HOH B 9 109 47 HOH HOH . 
O 8 HOH B 10 110 51 HOH HOH . 
O 8 HOH B 11 111 52 HOH HOH . 
O 8 HOH B 12 112 53 HOH HOH . 
O 8 HOH B 13 113 58 HOH HOH . 
O 8 HOH B 14 114 59 HOH HOH . 
O 8 HOH B 15 115 65 HOH HOH . 
O 8 HOH B 16 116 66 HOH HOH . 
P 8 HOH D 1 207 2 HOH HOH . 
P 8 HOH D 2 208 3 HOH HOH . 
P 8 HOH D 3 209 32 HOH HOH . 
P 8 HOH D 4 210 41 HOH HOH . 
P 8 HOH D 5 211 50 HOH HOH . 
P 8 HOH D 6 212 57 HOH HOH . 
P 8 HOH D 7 213 62 HOH HOH . 
Q 8 HOH E 1 64 64 HOH HOH . 
Q 8 HOH E 2 249 1 HOH HOH . 
Q 8 HOH E 3 250 5 HOH HOH . 
Q 8 HOH E 4 251 7 HOH HOH . 
Q 8 HOH E 5 252 9 HOH HOH . 
Q 8 HOH E 6 253 11 HOH HOH . 
Q 8 HOH E 7 254 14 HOH HOH . 
Q 8 HOH E 8 255 18 HOH HOH . 
Q 8 HOH E 9 256 21 HOH HOH . 
Q 8 HOH E 10 257 22 HOH HOH . 
Q 8 HOH E 11 258 23 HOH HOH . 
Q 8 HOH E 12 259 24 HOH HOH . 
Q 8 HOH E 13 260 25 HOH HOH . 
Q 8 HOH E 14 261 31 HOH HOH . 
Q 8 HOH E 15 262 33 HOH HOH . 
Q 8 HOH E 16 263 37 HOH HOH . 
Q 8 HOH E 17 264 39 HOH HOH . 
Q 8 HOH E 18 265 40 HOH HOH . 
Q 8 HOH E 19 266 45 HOH HOH . 
Q 8 HOH E 20 267 48 HOH HOH . 
Q 8 HOH E 21 268 49 HOH HOH . 
Q 8 HOH E 22 269 54 HOH HOH . 
Q 8 HOH E 23 270 61 HOH HOH . 
Q 8 HOH E 24 271 63 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . L 6 40.341 15.698 23.938 1 64.38 ? C1 GOL 247 E 1 
HETATM 2 O O1 GOL . . . L 6 40.195 15.745 25.342 1 65.04 ? O1 GOL 247 E 1 
HETATM 3 C C2 GOL . . . L 6 39.071 15.469 23.125 1 64.39 ? C2 GOL 247 E 1 
HETATM 4 O O2 GOL . . . L 6 37.935 15.965 23.802 1 65.42 ? O2 GOL 247 E 1 
HETATM 5 C C3 GOL . . . L 6 39.27 16.178 21.788 1 63.98 ? C3 GOL 247 E 1 
HETATM 6 O O3 GOL . . . L 6 38.195 15.934 20.915 1 62.72 ? O3 GOL 247 E 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           334 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#