data_3PWS # _model_server_result.job_id U7TjxM8oe3Sl4VFmQrTP_Q _model_server_result.datetime_utc '2024-12-12 20:46:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3pws # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":368}' # _entry.id 3PWS # _exptl.entry_id 3PWS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-2'-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.14 _cell.angle_gamma 90 _cell.entry_id 3PWS _cell.length_a 60.082 _cell.length_b 99.404 _cell.length_c 64.612 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PWS _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ALA 274 A ALA 274 1_555 D NA NA . A NA 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc2 A O PHE 276 A PHE 276 1_555 D NA NA . A NA 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc3 A O ALA 279 A ALA 279 1_555 D NA NA . A NA 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id A2P _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-2'-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P1 O1P A2P doub 22 n n P1 O2P A2P sing 23 n n P1 O3P A2P sing 24 n n P1 O2' A2P sing 25 n n O2P HOP2 A2P sing 26 n n O3P HOP3 A2P sing 27 n n P2 O4P A2P doub 28 n n P2 O5P A2P sing 29 n n P2 O6P A2P sing 30 n n P2 O5' A2P sing 31 n n O5P HOP5 A2P sing 32 n n O6P HOP6 A2P sing 33 n n O5' C5' A2P sing 34 n n C5' C4' A2P sing 35 n n C5' "H5'1" A2P sing 36 n n C5' "H5'2" A2P sing 37 n n C4' O4' A2P sing 38 n n C4' C3' A2P sing 39 n n C4' H4' A2P sing 40 n n O4' C1' A2P sing 41 n n C3' O3' A2P sing 42 n n C3' C2' A2P sing 43 n n C3' H3' A2P sing 44 n n O3' HO3' A2P sing 45 n n C2' O2' A2P sing 46 n n C2' C1' A2P sing 47 n n C2' H2' A2P sing 48 n n C1' N9 A2P sing 49 n n C1' H1' A2P sing 50 n n N9 C8 A2P sing 51 n y N9 C4 A2P sing 52 n y C8 N7 A2P doub 53 n y C8 H8 A2P sing 54 n n N7 C5 A2P sing 55 n y C5 C6 A2P sing 56 n y C5 C4 A2P doub 57 n y C6 N6 A2P sing 58 n n C6 N1 A2P doub 59 n y N6 HN61 A2P sing 60 n n N6 HN62 A2P sing 61 n n N1 C2 A2P sing 62 n y C2 N3 A2P doub 63 n y C2 H2 A2P sing 64 n n N3 C4 A2P sing 65 n y # _atom_sites.entry_id 3PWS _atom_sites.fract_transf_matrix[1][1] 0.016644 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003277 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01006 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015774 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 11C A 1 367 2 11C 11C . D 3 NA A 1 368 1 NA NA . E 4 A2P A 1 369 1 A2P A2P . F 2 11C B 1 367 1 11C 11C . G 4 A2P B 1 368 2 A2P A2P . H 5 HOH A 1 370 4 HOH HOH . H 5 HOH A 2 371 5 HOH HOH . H 5 HOH A 3 372 6 HOH HOH . H 5 HOH A 4 373 10 HOH HOH . H 5 HOH A 5 374 12 HOH HOH . H 5 HOH A 6 375 13 HOH HOH . H 5 HOH A 7 376 14 HOH HOH . H 5 HOH A 8 377 16 HOH HOH . H 5 HOH A 9 378 18 HOH HOH . H 5 HOH A 10 379 20 HOH HOH . H 5 HOH A 11 380 21 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 A2P . . . G 4 39.902 35.004 26.294 1 20.67 ? P1 A2P 368 B 1 HETATM 2 O O1P A2P . . . G 4 39.347 33.61 26.175 1 19.15 ? O1P A2P 368 B 1 HETATM 3 O O2P A2P . . . G 4 41.214 35.228 25.578 1 20.16 ? O2P A2P 368 B 1 HETATM 4 O O3P A2P . . . G 4 39.873 35.554 27.702 1 19.21 ? O3P A2P 368 B 1 HETATM 5 P P2 A2P . . . G 4 32.97 34.934 28.45 1 21.58 ? P2 A2P 368 B 1 HETATM 6 O O4P A2P . . . G 4 34.052 34.466 29.391 1 22.38 ? O4P A2P 368 B 1 HETATM 7 O O5P A2P . . . G 4 32.222 36.154 28.928 1 21.45 ? O5P A2P 368 B 1 HETATM 8 O O6P A2P . . . G 4 32.091 33.823 27.926 1 21.48 ? O6P A2P 368 B 1 HETATM 9 O O5' A2P . . . G 4 33.755 35.448 27.14 1 20.39 ? O5' A2P 368 B 1 HETATM 10 C C5' A2P . . . G 4 34.561 36.623 27.18 1 19.42 ? C5' A2P 368 B 1 HETATM 11 C C4' A2P . . . G 4 35.355 36.742 25.883 1 18.98 ? C4' A2P 368 B 1 HETATM 12 O O4' A2P . . . G 4 35.998 38.024 25.834 1 18.42 ? O4' A2P 368 B 1 HETATM 13 C C3' A2P . . . G 4 36.456 35.696 25.791 1 18.76 ? C3' A2P 368 B 1 HETATM 14 O O3' A2P . . . G 4 36.478 35.17 24.46 1 18.26 ? O3' A2P 368 B 1 HETATM 15 C C2' A2P . . . G 4 37.723 36.479 26.074 1 18.95 ? C2' A2P 368 B 1 HETATM 16 O O2' A2P . . . G 4 38.87 35.913 25.447 1 19.55 ? O2' A2P 368 B 1 HETATM 17 C C1' A2P . . . G 4 37.379 37.849 25.517 1 18.75 ? C1' A2P 368 B 1 HETATM 18 N N9 A2P . . . G 4 38.22 38.927 26.089 1 18.91 ? N9 A2P 368 B 1 HETATM 19 C C8 A2P . . . G 4 38.32 39.281 27.379 1 18.97 ? C8 A2P 368 B 1 HETATM 20 N N7 A2P . . . G 4 39.191 40.308 27.481 1 19.39 ? N7 A2P 368 B 1 HETATM 21 C C5 A2P . . . G 4 39.636 40.597 26.241 1 19.4 ? C5 A2P 368 B 1 HETATM 22 C C6 A2P . . . G 4 40.528 41.533 25.728 1 19.86 ? C6 A2P 368 B 1 HETATM 23 N N6 A2P . . . G 4 41.159 42.41 26.546 1 20.07 ? N6 A2P 368 B 1 HETATM 24 N N1 A2P . . . G 4 40.763 41.563 24.395 1 19.89 ? N1 A2P 368 B 1 HETATM 25 C C2 A2P . . . G 4 40.148 40.705 23.566 1 19.73 ? C2 A2P 368 B 1 HETATM 26 N N3 A2P . . . G 4 39.284 39.789 24.034 1 19.59 ? N3 A2P 368 B 1 HETATM 27 C C4 A2P . . . G 4 39.015 39.72 25.367 1 19.42 ? C4 A2P 368 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 27 #