data_3PX8 # _model_server_result.job_id RS3yekOStvk2Ilq11E6dqg _model_server_result.datetime_utc '2024-10-25 20:33:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3px8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3PX8 # _exptl.entry_id 3PX8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 207.146 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-amino-4-oxo-1,4-dihydropteridine-7-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.78 _cell.angle_gamma 90 _cell.entry_id 3PX8 _cell.length_a 42.662 _cell.length_b 67.567 _cell.length_c 49.41 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PX8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C7 H5 N5 O3' _chem_comp.formula_weight 207.146 _chem_comp.id JP2 _chem_comp.mon_nstd_flag . _chem_comp.name '2-amino-4-oxo-1,4-dihydropteridine-7-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N3 C1 JP2 sing 173 n n C1 N2 JP2 doub 174 n n C1 N1 JP2 sing 175 n n N1 HN1 JP2 sing 176 n n N1 HN1A JP2 sing 177 n n C2 O1 JP2 doub 178 n n C3 C2 JP2 sing 179 n n C2 N2 JP2 sing 180 n n O2 C7 JP2 sing 181 n n O2 HO2 JP2 sing 182 n n N5 C3 JP2 doub 183 n y C4 C3 JP2 sing 184 n y C4 N3 JP2 sing 185 n n N3 HN3 JP2 sing 186 n n O3 C7 JP2 doub 187 n n N4 C4 JP2 doub 188 n y C5 N4 JP2 sing 189 n y C7 C5 JP2 sing 190 n n C5 C6 JP2 doub 191 n y C6 N5 JP2 sing 192 n y C6 H6 JP2 sing 193 n n # _atom_sites.entry_id 3PX8 _atom_sites.fract_transf_matrix[1][1] 0.02344 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.009842 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0148 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021951 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JP2 X 1 1 1 JP2 JP2 . C 3 HOH X 1 2 2 HOH HOH . C 3 HOH X 2 3 3 HOH HOH . C 3 HOH X 3 262 1 HOH HOH . C 3 HOH X 4 263 4 HOH HOH . C 3 HOH X 5 264 5 HOH HOH . C 3 HOH X 6 265 6 HOH HOH . C 3 HOH X 7 266 7 HOH HOH . C 3 HOH X 8 267 8 HOH HOH . C 3 HOH X 9 268 9 HOH HOH . C 3 HOH X 10 269 10 HOH HOH . C 3 HOH X 11 270 11 HOH HOH . C 3 HOH X 12 271 12 HOH HOH . C 3 HOH X 13 272 16 HOH HOH . C 3 HOH X 14 273 17 HOH HOH . C 3 HOH X 15 274 18 HOH HOH . C 3 HOH X 16 275 19 HOH HOH . C 3 HOH X 17 276 20 HOH HOH . C 3 HOH X 18 277 21 HOH HOH . C 3 HOH X 19 278 22 HOH HOH . C 3 HOH X 20 279 23 HOH HOH . C 3 HOH X 21 280 24 HOH HOH . C 3 HOH X 22 281 25 HOH HOH . C 3 HOH X 23 282 26 HOH HOH . C 3 HOH X 24 283 27 HOH HOH . C 3 HOH X 25 284 28 HOH HOH . C 3 HOH X 26 285 29 HOH HOH . C 3 HOH X 27 286 30 HOH HOH . C 3 HOH X 28 287 31 HOH HOH . C 3 HOH X 29 288 32 HOH HOH . C 3 HOH X 30 289 33 HOH HOH . C 3 HOH X 31 290 34 HOH HOH . C 3 HOH X 32 291 35 HOH HOH . C 3 HOH X 33 292 36 HOH HOH . C 3 HOH X 34 293 37 HOH HOH . C 3 HOH X 35 294 38 HOH HOH . C 3 HOH X 36 295 39 HOH HOH . C 3 HOH X 37 296 40 HOH HOH . C 3 HOH X 38 297 41 HOH HOH . C 3 HOH X 39 298 42 HOH HOH . C 3 HOH X 40 299 43 HOH HOH . C 3 HOH X 41 300 44 HOH HOH . C 3 HOH X 42 301 45 HOH HOH . C 3 HOH X 43 302 46 HOH HOH . C 3 HOH X 44 303 47 HOH HOH . C 3 HOH X 45 304 48 HOH HOH . C 3 HOH X 46 305 49 HOH HOH . C 3 HOH X 47 306 50 HOH HOH . C 3 HOH X 48 307 51 HOH HOH . C 3 HOH X 49 308 52 HOH HOH . C 3 HOH X 50 309 53 HOH HOH . C 3 HOH X 51 310 54 HOH HOH . C 3 HOH X 52 311 55 HOH HOH . C 3 HOH X 53 312 56 HOH HOH . C 3 HOH X 54 313 57 HOH HOH . C 3 HOH X 55 314 58 HOH HOH . C 3 HOH X 56 315 59 HOH HOH . C 3 HOH X 57 316 60 HOH HOH . C 3 HOH X 58 317 61 HOH HOH . C 3 HOH X 59 318 62 HOH HOH . C 3 HOH X 60 319 63 HOH HOH . C 3 HOH X 61 320 64 HOH HOH . C 3 HOH X 62 321 65 HOH HOH . C 3 HOH X 63 322 66 HOH HOH . C 3 HOH X 64 323 67 HOH HOH . C 3 HOH X 65 324 68 HOH HOH . C 3 HOH X 66 325 69 HOH HOH . C 3 HOH X 67 326 70 HOH HOH . C 3 HOH X 68 327 71 HOH HOH . C 3 HOH X 69 328 72 HOH HOH . C 3 HOH X 70 329 73 HOH HOH . C 3 HOH X 71 330 74 HOH HOH . C 3 HOH X 72 331 75 HOH HOH . C 3 HOH X 73 332 76 HOH HOH . C 3 HOH X 74 333 77 HOH HOH . C 3 HOH X 75 334 78 HOH HOH . C 3 HOH X 76 335 79 HOH HOH . C 3 HOH X 77 336 80 HOH HOH . C 3 HOH X 78 337 81 HOH HOH . C 3 HOH X 79 338 82 HOH HOH . C 3 HOH X 80 339 83 HOH HOH . C 3 HOH X 81 340 84 HOH HOH . C 3 HOH X 82 341 85 HOH HOH . C 3 HOH X 83 342 86 HOH HOH . C 3 HOH X 84 343 87 HOH HOH . C 3 HOH X 85 344 88 HOH HOH . C 3 HOH X 86 345 89 HOH HOH . C 3 HOH X 87 346 90 HOH HOH . C 3 HOH X 88 347 91 HOH HOH . C 3 HOH X 89 348 92 HOH HOH . C 3 HOH X 90 349 93 HOH HOH . C 3 HOH X 91 350 94 HOH HOH . C 3 HOH X 92 351 96 HOH HOH . C 3 HOH X 93 352 97 HOH HOH . C 3 HOH X 94 353 98 HOH HOH . C 3 HOH X 95 354 100 HOH HOH . C 3 HOH X 96 355 101 HOH HOH . C 3 HOH X 97 356 102 HOH HOH . C 3 HOH X 98 357 103 HOH HOH . C 3 HOH X 99 358 104 HOH HOH . C 3 HOH X 100 359 105 HOH HOH . C 3 HOH X 101 360 106 HOH HOH . C 3 HOH X 102 361 107 HOH HOH . C 3 HOH X 103 362 108 HOH HOH . C 3 HOH X 104 363 109 HOH HOH . C 3 HOH X 105 364 110 HOH HOH . C 3 HOH X 106 365 111 HOH HOH . C 3 HOH X 107 366 112 HOH HOH . C 3 HOH X 108 367 113 HOH HOH . C 3 HOH X 109 368 114 HOH HOH . C 3 HOH X 110 369 115 HOH HOH . C 3 HOH X 111 370 116 HOH HOH . C 3 HOH X 112 371 117 HOH HOH . C 3 HOH X 113 372 118 HOH HOH . C 3 HOH X 114 373 119 HOH HOH . C 3 HOH X 115 374 120 HOH HOH . C 3 HOH X 116 375 121 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 JP2 . . . B 2 2.717 3.347 8.428 1 11.45 ? C1 JP2 1 X 1 HETATM 2 N N1 JP2 . . . B 2 3.787 3.033 9.181 1 12.39 ? N1 JP2 1 X 1 HETATM 3 O O1 JP2 . . . B 2 -0.726 3.16 8.476 1 12.38 ? O1 JP2 1 X 1 HETATM 4 C C2 JP2 . . . B 2 0.481 3.413 8.115 1 11.57 ? C2 JP2 1 X 1 HETATM 5 N N2 JP2 . . . B 2 1.488 3.059 8.893 1 11.02 ? N2 JP2 1 X 1 HETATM 6 O O2 JP2 . . . B 2 2.627 6.73 3.223 1 13.45 ? O2 JP2 1 X 1 HETATM 7 C C3 JP2 . . . B 2 0.612 4.14 6.876 1 11.57 ? C3 JP2 1 X 1 HETATM 8 N N3 JP2 . . . B 2 2.962 3.992 7.264 1 12.03 ? N3 JP2 1 X 1 HETATM 9 O O3 JP2 . . . B 2 0.48 6.992 2.864 1 17.21 ? O3 JP2 1 X 1 HETATM 10 C C4 JP2 . . . B 2 1.946 4.435 6.446 1 12.27 ? C4 JP2 1 X 1 HETATM 11 N N4 JP2 . . . B 2 2.243 5.169 5.363 1 13.05 ? N4 JP2 1 X 1 HETATM 12 C C5 JP2 . . . B 2 1.165 5.657 4.657 1 13.25 ? C5 JP2 1 X 1 HETATM 13 N N5 JP2 . . . B 2 -0.456 4.501 6.061 1 12.22 ? N5 JP2 1 X 1 HETATM 14 C C6 JP2 . . . B 2 -0.206 5.273 4.993 1 13.19 ? C6 JP2 1 X 1 HETATM 15 C C7 JP2 . . . B 2 1.412 6.479 3.498 1 14.58 ? C7 JP2 1 X 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 15 #