data_3PX9 # _model_server_result.job_id ea8riCJgHRcRLrSo7QOtyw _model_server_result.datetime_utc '2024-12-26 15:34:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3px9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3PX9 # _exptl.entry_id 3PX9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 286.246 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-amino-N-(furan-2-ylmethyl)-4-oxo-3,4-dihydropteridine-7-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.52 _cell.angle_gamma 90 _cell.entry_id 3PX9 _cell.length_a 42.444 _cell.length_b 67.328 _cell.length_c 49.462 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PX9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C12 H10 N6 O3' _chem_comp.formula_weight 286.246 _chem_comp.id JP3 _chem_comp.mon_nstd_flag . _chem_comp.name 2-amino-N-(furan-2-ylmethyl)-4-oxo-3,4-dihydropteridine-7-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N3 C1 JP3 doub 173 n n C1 N2 JP3 sing 174 n n C1 N1 JP3 sing 175 n n N1 HN1 JP3 sing 176 n n N1 HN1A JP3 sing 177 n n C2 O1 JP3 doub 178 n n C3 C2 JP3 sing 179 n n C2 N2 JP3 sing 180 n n N2 HN2 JP3 sing 181 n n O2 C7 JP3 doub 182 n n N5 C3 JP3 doub 183 n y C4 C3 JP3 sing 184 n y C4 N3 JP3 sing 185 n n C9 O3 JP3 sing 186 n y C12 O3 JP3 sing 187 n y N4 C4 JP3 doub 188 n y C5 N4 JP3 sing 189 n y C7 C5 JP3 sing 190 n n C5 C6 JP3 doub 191 n y C6 N5 JP3 sing 192 n y C6 H6 JP3 sing 193 n n C8 N6 JP3 sing 194 n n N6 C7 JP3 sing 195 n n N6 HN6 JP3 sing 196 n n C8 C9 JP3 sing 197 n n C8 H8 JP3 sing 198 n n C8 H8A JP3 sing 199 n n C10 C9 JP3 doub 200 n y C10 C11 JP3 sing 201 n y C10 H10 JP3 sing 202 n n C11 C12 JP3 doub 203 n y C11 H11 JP3 sing 204 n n C12 H12 JP3 sing 205 n n # _atom_sites.entry_id 3PX9 _atom_sites.fract_transf_matrix[1][1] 0.02356 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.009769 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014853 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021887 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JP3 X 1 1 1 JP3 JP3 . C 3 HOH X 1 2 2 HOH HOH . C 3 HOH X 2 3 3 HOH HOH . C 3 HOH X 3 262 1 HOH HOH . C 3 HOH X 4 263 4 HOH HOH . C 3 HOH X 5 264 5 HOH HOH . C 3 HOH X 6 265 6 HOH HOH . C 3 HOH X 7 266 7 HOH HOH . C 3 HOH X 8 267 9 HOH HOH . C 3 HOH X 9 268 10 HOH HOH . C 3 HOH X 10 269 12 HOH HOH . C 3 HOH X 11 270 13 HOH HOH . C 3 HOH X 12 271 14 HOH HOH . C 3 HOH X 13 272 15 HOH HOH . C 3 HOH X 14 273 16 HOH HOH . C 3 HOH X 15 274 17 HOH HOH . C 3 HOH X 16 275 18 HOH HOH . C 3 HOH X 17 276 19 HOH HOH . C 3 HOH X 18 277 20 HOH HOH . C 3 HOH X 19 278 22 HOH HOH . C 3 HOH X 20 279 23 HOH HOH . C 3 HOH X 21 280 24 HOH HOH . C 3 HOH X 22 281 25 HOH HOH . C 3 HOH X 23 282 26 HOH HOH . C 3 HOH X 24 283 27 HOH HOH . C 3 HOH X 25 284 28 HOH HOH . C 3 HOH X 26 285 29 HOH HOH . C 3 HOH X 27 286 30 HOH HOH . C 3 HOH X 28 287 31 HOH HOH . C 3 HOH X 29 288 32 HOH HOH . C 3 HOH X 30 289 33 HOH HOH . C 3 HOH X 31 290 34 HOH HOH . C 3 HOH X 32 291 36 HOH HOH . C 3 HOH X 33 292 37 HOH HOH . C 3 HOH X 34 293 38 HOH HOH . C 3 HOH X 35 294 39 HOH HOH . C 3 HOH X 36 295 40 HOH HOH . C 3 HOH X 37 296 41 HOH HOH . C 3 HOH X 38 297 43 HOH HOH . C 3 HOH X 39 298 44 HOH HOH . C 3 HOH X 40 299 45 HOH HOH . C 3 HOH X 41 300 48 HOH HOH . C 3 HOH X 42 301 51 HOH HOH . C 3 HOH X 43 302 52 HOH HOH . C 3 HOH X 44 303 53 HOH HOH . C 3 HOH X 45 304 56 HOH HOH . C 3 HOH X 46 305 57 HOH HOH . C 3 HOH X 47 306 59 HOH HOH . C 3 HOH X 48 307 61 HOH HOH . C 3 HOH X 49 308 62 HOH HOH . C 3 HOH X 50 309 64 HOH HOH . C 3 HOH X 51 310 65 HOH HOH . C 3 HOH X 52 311 72 HOH HOH . C 3 HOH X 53 312 73 HOH HOH . C 3 HOH X 54 313 74 HOH HOH . C 3 HOH X 55 314 76 HOH HOH . C 3 HOH X 56 315 78 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 JP3 . . . B 2 2.347 3.354 8.208 1 30.63 ? C1 JP3 1 X 1 HETATM 2 N N1 JP3 . . . B 2 3.423 3.027 8.943 1 29.94 ? N1 JP3 1 X 1 HETATM 3 O O1 JP3 . . . B 2 -1.091 3.078 8.346 1 30.43 ? O1 JP3 1 X 1 HETATM 4 C C2 JP3 . . . B 2 0.026 3.373 7.934 1 30 ? C2 JP3 1 X 1 HETATM 5 N N2 JP3 . . . B 2 1.114 3.035 8.689 1 28.31 ? N2 JP3 1 X 1 HETATM 6 O O2 JP3 . . . B 2 2.071 6.443 2.814 1 30.08 ? O2 JP3 1 X 1 HETATM 7 C C3 JP3 . . . B 2 0.201 4.056 6.64 1 26.17 ? C3 JP3 1 X 1 HETATM 8 N N3 JP3 . . . B 2 2.567 3.967 7.028 1 29.46 ? N3 JP3 1 X 1 HETATM 9 O O3 JP3 . . . B 2 0.496 9.846 2.359 1 64.37 ? O3 JP3 1 X 1 HETATM 10 C C4 JP3 . . . B 2 1.566 4.367 6.224 1 27.44 ? C4 JP3 1 X 1 HETATM 11 N N4 JP3 . . . B 2 1.775 5.015 5.057 1 28.31 ? N4 JP3 1 X 1 HETATM 12 C C5 JP3 . . . B 2 0.687 5.376 4.306 1 28.75 ? C5 JP3 1 X 1 HETATM 13 N N5 JP3 . . . B 2 -0.82 4.416 5.854 1 28.21 ? N5 JP3 1 X 1 HETATM 14 C C6 JP3 . . . B 2 -0.608 5.093 4.724 1 27.83 ? C6 JP3 1 X 1 HETATM 15 N N6 JP3 . . . B 2 -0.09 6.798 2.458 1 37.88 ? N6 JP3 1 X 1 HETATM 16 C C7 JP3 . . . B 2 0.908 6.202 3.109 1 31.43 ? C7 JP3 1 X 1 HETATM 17 C C8 JP3 . . . B 2 0.145 7.523 1.18 1 46.81 ? C8 JP3 1 X 1 HETATM 18 C C9 JP3 . . . B 2 -0.042 9.045 1.342 1 58.7 ? C9 JP3 1 X 1 HETATM 19 C C10 JP3 . . . B 2 -0.767 9.891 0.473 1 61.85 ? C10 JP3 1 X 1 HETATM 20 C C11 JP3 . . . B 2 -0.674 11.185 0.986 1 65.3 ? C11 JP3 1 X 1 HETATM 21 C C12 JP3 . . . B 2 0.101 11.167 2.149 1 65.32 ? C12 JP3 1 X 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 21 #