data_3PXO
#
_model_server_result.job_id            '_NGoUmV-9JuedPVoGA2fIg' 
_model_server_result.datetime_utc      '2024-11-14 17:27:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3pxo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":601}' 
#
_entry.id    3PXO 
#
_exptl.entry_id    3PXO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              292.369 
_entity.id                          4 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            'octyl beta-D-glucopyranoside' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3PXO 
_cell.length_a            241.82 
_cell.length_b            241.82 
_cell.length_c            111.8 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3PXO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_556 x-y,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 111.8 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
#
loop_
_pdbx_entity_branch.entity_id
_pdbx_entity_branch.type
2 oligosaccharide 
3 oligosaccharide 
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.details
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.atom_stereo_config_1
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.atom_stereo_config_2
_pdbx_entity_branch_link.value_order
1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 
3 ? 2 4 3 MAN BMA C1 O1 . O3 HO3 . sing 
4 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
2 n B NAG 1 B 1 NAG A 401 NAG 
2 n B NAG 2 B 2 NAG A 402 NAG 
2 n B BMA 3 B 3 BMA A 403 BMA 
2 n B MAN 4 B 4 MAN A 404 MAN 
3 n C NAG 1 C 1 NAG A 501 NAG 
3 n C NAG 2 C 2 NAG A 502 NAG 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 110 A CYS 110 1_555 A SG CYS 187 A CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
covale ? covale1 A ND2 ASN 2 A ASN 2 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale2 A ND2 ASN 15 A ASN 15 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale3 A NZ LYS 296 A LYS 296 1_555 G C15 RET . A RET 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale4 A SG CYS 323 A CYS 323 1_555 F C1 PLM . A PLM 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.837 ? 
covale ? covale5 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? 
covale ? covale6 B O4 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.424 ? 
covale ? covale7 B O3 BMA . B BMA 3 1_555 B C1 MAN . B MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? 
covale ? covale8 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.465 ? 
#
_chem_comp.formula           'C14 H28 O6' 
_chem_comp.formula_weight    292.369 
_chem_comp.id                BOG 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              'octyl beta-D-glucopyranoside' 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 BOG sing 94 n n 
C1 C2 BOG sing 95 n n 
C1 O5 BOG sing 96 n n 
C1 H1 BOG sing 97 n n 
O1 C1' BOG sing 98 n n 
C2 O2 BOG sing 99 n n 
C2 C3 BOG sing 100 n n 
C2 H2 BOG sing 101 n n 
O2 HO2 BOG sing 102 n n 
C3 O3 BOG sing 103 n n 
C3 C4 BOG sing 104 n n 
C3 H3 BOG sing 105 n n 
O3 HO3 BOG sing 106 n n 
C4 O4 BOG sing 107 n n 
C4 C5 BOG sing 108 n n 
C4 H4 BOG sing 109 n n 
O4 HO4 BOG sing 110 n n 
C5 O5 BOG sing 111 n n 
C5 C6 BOG sing 112 n n 
C5 H5 BOG sing 113 n n 
C6 O6 BOG sing 114 n n 
C6 H61 BOG sing 115 n n 
C6 H62 BOG sing 116 n n 
O6 HO6 BOG sing 117 n n 
C1' C2' BOG sing 118 n n 
C1' "H1'1" BOG sing 119 n n 
C1' "H1'2" BOG sing 120 n n 
C2' C3' BOG sing 121 n n 
C2' "H2'1" BOG sing 122 n n 
C2' "H2'2" BOG sing 123 n n 
C3' C4' BOG sing 124 n n 
C3' "H3'1" BOG sing 125 n n 
C3' "H3'2" BOG sing 126 n n 
C4' C5' BOG sing 127 n n 
C4' "H4'1" BOG sing 128 n n 
C4' "H4'2" BOG sing 129 n n 
C5' C6' BOG sing 130 n n 
C5' "H5'1" BOG sing 131 n n 
C5' "H5'2" BOG sing 132 n n 
C6' C7' BOG sing 133 n n 
C6' "H6'1" BOG sing 134 n n 
C6' "H6'2" BOG sing 135 n n 
C7' C8' BOG sing 136 n n 
C7' "H7'1" BOG sing 137 n n 
C7' "H7'2" BOG sing 138 n n 
C8' "H8'1" BOG sing 139 n n 
C8' "H8'2" BOG sing 140 n n 
C8' "H8'3" BOG sing 141 n n 
#
_pdbx_chem_comp_identifier.comp_id            BOG 
_pdbx_chem_comp_identifier.identifier         b-octylglucoside 
_pdbx_chem_comp_identifier.type               'IUPAC CARBOHYDRATE SYMBOL' 
_pdbx_chem_comp_identifier.program            PDB-CARE 
_pdbx_chem_comp_identifier.program_version    1 
#
_atom_sites.entry_id                     3PXO 
_atom_sites.fract_transf_matrix[1][1]    0.004135 
_atom_sites.fract_transf_matrix[1][2]    0.002388 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004775 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008945 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 BOG A 1 601 601 BOG BOG . 
E 4 BOG A 1 602 602 BOG BOG . 
F 5 PLM A 1 701 701 PLM PLM . 
G 6 RET A 1 801 801 RET RET . 
H 7 HOH A 1 349 1 HOH HOH . 
H 7 HOH A 2 350 2 HOH HOH . 
H 7 HOH A 3 351 3 HOH HOH . 
H 7 HOH A 4 352 4 HOH HOH . 
H 7 HOH A 5 353 5 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BOG . . . D 4 -18.466 -24.783 46.928 1 132.48 ? C1 BOG 601 A 1 
HETATM 2 O O1 BOG . . . D 4 -19.796 -24.444 46.494 1 127.04 ? O1 BOG 601 A 1 
HETATM 3 C C2 BOG . . . D 4 -18.308 -24.264 48.364 1 131.39 ? C2 BOG 601 A 1 
HETATM 4 O O2 BOG . . . D 4 -18.375 -22.836 48.368 1 127.45 ? O2 BOG 601 A 1 
HETATM 5 C C3 BOG . . . D 4 -16.977 -24.703 48.979 1 136.17 ? C3 BOG 601 A 1 
HETATM 6 O O3 BOG . . . D 4 -17.007 -24.41 50.378 1 130.01 ? O3 BOG 601 A 1 
HETATM 7 C C4 BOG . . . D 4 -16.694 -26.204 48.741 1 142.62 ? C4 BOG 601 A 1 
HETATM 8 O O4 BOG . . . D 4 -15.345 -26.525 49.104 1 144.81 ? O4 BOG 601 A 1 
HETATM 9 C C5 BOG . . . D 4 -16.918 -26.604 47.271 1 142.83 ? C5 BOG 601 A 1 
HETATM 10 O O5 BOG . . . D 4 -18.251 -26.222 46.833 1 139.86 ? O5 BOG 601 A 1 
HETATM 11 C C6 BOG . . . D 4 -16.701 -28.124 47.135 1 142.98 ? C6 BOG 601 A 1 
HETATM 12 O O6 BOG . . . D 4 -16.416 -28.449 45.772 1 141.54 ? O6 BOG 601 A 1 
HETATM 13 C C1' BOG . . . D 4 -19.898 -24.467 45.056 1 113.65 ? C1' BOG 601 A 1 
HETATM 14 C C2' BOG . . . D 4 -21.29 -23.983 44.641 1 97.52 ? C2' BOG 601 A 1 
HETATM 15 C C3' BOG . . . D 4 -21.235 -23.292 43.282 1 91.03 ? C3' BOG 601 A 1 
HETATM 16 C C4' BOG . . . D 4 -22.251 -22.158 43.209 1 85.2 ? C4' BOG 601 A 1 
HETATM 17 C C5' BOG . . . D 4 -23.514 -22.636 42.506 1 82.02 ? C5' BOG 601 A 1 
HETATM 18 C C6' BOG . . . D 4 -23.573 -22.097 41.083 1 83.34 ? C6' BOG 601 A 1 
HETATM 19 C C7' BOG . . . D 4 -24.993 -22.214 40.532 1 83.26 ? C7' BOG 601 A 1 
HETATM 20 C C8' BOG . . . D 4 -25.225 -21.182 39.429 1 84.3 ? C8' BOG 601 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           216 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           20 
#