data_3PXO
#
_model_server_result.job_id            fVIr7gQCVW--XGFwACd4aA 
_model_server_result.datetime_utc      '2024-11-22 15:03:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3pxo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":701}' 
#
_entry.id    3PXO 
#
_exptl.entry_id    3PXO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              256.424 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PALMITIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3PXO 
_cell.length_a            241.82 
_cell.length_b            241.82 
_cell.length_c            111.8 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3PXO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        155 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_556 x-y,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 111.8 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_pdbx_entity_branch.entity_id
_pdbx_entity_branch.type
2 oligosaccharide 
3 oligosaccharide 
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.details
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.atom_stereo_config_1
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.atom_stereo_config_2
_pdbx_entity_branch_link.value_order
1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 
3 ? 2 4 3 MAN BMA C1 O1 . O3 HO3 . sing 
4 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
2 n B NAG 1 B 1 NAG A 401 NAG 
2 n B NAG 2 B 2 NAG A 402 NAG 
2 n B BMA 3 B 3 BMA A 403 BMA 
2 n B MAN 4 B 4 MAN A 404 MAN 
3 n C NAG 1 C 1 NAG A 501 NAG 
3 n C NAG 2 C 2 NAG A 502 NAG 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 110 A CYS 110 1_555 A SG CYS 187 A CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
covale ? covale1 A ND2 ASN 2 A ASN 2 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale2 A ND2 ASN 15 A ASN 15 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale3 A NZ LYS 296 A LYS 296 1_555 G C15 RET . A RET 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale4 A SG CYS 323 A CYS 323 1_555 F C1 PLM . A PLM 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.837 ? 
covale ? covale5 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 ? 
covale ? covale6 B O4 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.424 ? 
covale ? covale7 B O3 BMA . B BMA 3 1_555 B C1 MAN . B MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? 
covale ? covale8 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.465 ? 
#
_chem_comp.formula           'C16 H32 O2' 
_chem_comp.formula_weight    256.424 
_chem_comp.id                PLM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PALMITIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 PLM sing 386 n n 
C1 O2 PLM doub 387 n n 
C1 C2 PLM sing 388 n n 
O1 H PLM sing 389 n n 
C2 C3 PLM sing 390 n n 
C2 H21 PLM sing 391 n n 
C2 H22 PLM sing 392 n n 
C3 C4 PLM sing 393 n n 
C3 H31 PLM sing 394 n n 
C3 H32 PLM sing 395 n n 
C4 C5 PLM sing 396 n n 
C4 H41 PLM sing 397 n n 
C4 H42 PLM sing 398 n n 
C5 C6 PLM sing 399 n n 
C5 H51 PLM sing 400 n n 
C5 H52 PLM sing 401 n n 
C6 C7 PLM sing 402 n n 
C6 H61 PLM sing 403 n n 
C6 H62 PLM sing 404 n n 
C7 C8 PLM sing 405 n n 
C7 H71 PLM sing 406 n n 
C7 H72 PLM sing 407 n n 
C8 C9 PLM sing 408 n n 
C8 H81 PLM sing 409 n n 
C8 H82 PLM sing 410 n n 
C9 CA PLM sing 411 n n 
C9 H91 PLM sing 412 n n 
C9 H92 PLM sing 413 n n 
CA CB PLM sing 414 n n 
CA HA1 PLM sing 415 n n 
CA HA2 PLM sing 416 n n 
CB CC PLM sing 417 n n 
CB HB1 PLM sing 418 n n 
CB HB2 PLM sing 419 n n 
CC CD PLM sing 420 n n 
CC HC1 PLM sing 421 n n 
CC HC2 PLM sing 422 n n 
CD CE PLM sing 423 n n 
CD HD1 PLM sing 424 n n 
CD HD2 PLM sing 425 n n 
CE CF PLM sing 426 n n 
CE HE1 PLM sing 427 n n 
CE HE2 PLM sing 428 n n 
CF CG PLM sing 429 n n 
CF HF1 PLM sing 430 n n 
CF HF2 PLM sing 431 n n 
CG HG1 PLM sing 432 n n 
CG HG2 PLM sing 433 n n 
CG HG3 PLM sing 434 n n 
#
_atom_sites.entry_id                     3PXO 
_atom_sites.fract_transf_matrix[1][1]    0.004135 
_atom_sites.fract_transf_matrix[1][2]    0.002388 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004775 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008945 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 BOG A 1 601 601 BOG BOG . 
E 4 BOG A 1 602 602 BOG BOG . 
F 5 PLM A 1 701 701 PLM PLM . 
G 6 RET A 1 801 801 RET RET . 
H 7 HOH A 1 349 1 HOH HOH . 
H 7 HOH A 2 350 2 HOH HOH . 
H 7 HOH A 3 351 3 HOH HOH . 
H 7 HOH A 4 352 4 HOH HOH . 
H 7 HOH A 5 353 5 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PLM . . . F 5 -25.546 15.424 55.984 1 121.11 ? C1 PLM 701 A 1 
HETATM 2 O O2 PLM . . . F 5 -24.441 15.377 56.587 1 118.2 ? O2 PLM 701 A 1 
HETATM 3 C C2 PLM . . . F 5 -26.783 14.884 56.781 1 115.55 ? C2 PLM 701 A 1 
HETATM 4 C C3 PLM . . . F 5 -26.61 13.446 57.358 1 112.18 ? C3 PLM 701 A 1 
HETATM 5 C C4 PLM . . . F 5 -27.578 13.116 58.534 1 104.25 ? C4 PLM 701 A 1 
HETATM 6 C C5 PLM . . . F 5 -28.283 11.739 58.391 1 94.58 ? C5 PLM 701 A 1 
HETATM 7 C C6 PLM . . . F 5 -28.437 10.943 59.714 1 84.75 ? C6 PLM 701 A 1 
HETATM 8 C C7 PLM . . . F 5 -29.915 10.82 60.192 1 77.62 ? C7 PLM 701 A 1 
HETATM 9 C C8 PLM . . . F 5 -30.505 9.384 60.147 1 73.4 ? C8 PLM 701 A 1 
HETATM 10 C C9 PLM . . . F 5 -32.036 9.415 59.899 1 71.9 ? C9 PLM 701 A 1 
HETATM 11 C CA PLM . . . F 5 -32.719 8.039 59.671 1 71.01 ? CA PLM 701 A 1 
HETATM 12 C CB PLM . . . F 5 -34.256 8.198 59.762 1 72.27 ? CB PLM 701 A 1 
HETATM 13 C CC PLM . . . F 5 -35.09 6.972 59.317 1 71.23 ? CC PLM 701 A 1 
HETATM 14 C CD PLM . . . F 5 -36.597 7.203 59.607 1 65.17 ? CD PLM 701 A 1 
HETATM 15 C CE PLM . . . F 5 -37.513 6.286 58.777 1 72.13 ? CE PLM 701 A 1 
HETATM 16 C CF PLM . . . F 5 -38.962 6.206 59.311 1 69.05 ? CF PLM 701 A 1 
HETATM 17 C CG PLM . . . F 5 -39.965 6.876 58.36 1 70.19 ? CG PLM 701 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           265 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           17 
#