data_3PXU # _model_server_result.job_id ciURiakdQNJu61mEWtXKAA _model_server_result.datetime_utc '2024-12-03 03:51:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3pxu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 3PXU # _exptl.entry_id 3PXU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 687.554 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DEPHOSPHO COENZYME A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3PXU _cell.length_a 134.161 _cell.length_b 134.161 _cell.length_c 134.161 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PXU _symmetry.cell_setting ? _symmetry.Int_Tables_number 211 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA hexameric 6 author_and_software_defined_assembly 1 PISA 24-meric 24 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 1,2,3,4,5,6 A,B,C,D,E,F,G 2 1,7,8,9,10,2,11,12,13,14,15,3,16,17,18,19,20,21,22,23,24,25,26,27 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 z,-x,-y 0 0 1 -1 0 0 0 -1 0 0 0 0 3 'crystal symmetry operation' 12_555 -y,-z,x 0 -1 0 0 0 -1 1 0 0 0 0 0 4 'crystal symmetry operation' 37_454 y-1/2,x+1/2,-z-1/2 0 1 0 1 0 0 0 0 -1 -67.0805 67.0805 -67.0805 5 'crystal symmetry operation' 42_454 -x-1/2,z+1/2,y-1/2 -1 0 0 0 0 1 0 1 0 -67.0805 67.0805 -67.0805 6 'crystal symmetry operation' 48_454 -z-1/2,-y+1/2,-x-1/2 0 0 -1 0 -1 0 -1 0 0 -67.0805 67.0805 -67.0805 7 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 8 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 9 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 10 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 11 'crystal symmetry operation' 7_555 -z,-x,y 0 0 -1 -1 0 0 0 1 0 0 0 0 12 'crystal symmetry operation' 8_555 -z,x,-y 0 0 -1 1 0 0 0 -1 0 0 0 0 13 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 14 'crystal symmetry operation' 10_555 -y,z,-x 0 -1 0 0 0 1 -1 0 0 0 0 0 15 'crystal symmetry operation' 11_555 y,-z,-x 0 1 0 0 0 -1 -1 0 0 0 0 0 16 'crystal symmetry operation' 13_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 17 'crystal symmetry operation' 14_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 18 'crystal symmetry operation' 15_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 19 'crystal symmetry operation' 16_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 20 'crystal symmetry operation' 17_555 x,z,-y 1 0 0 0 0 1 0 -1 0 0 0 0 21 'crystal symmetry operation' 18_555 -x,z,y -1 0 0 0 0 1 0 1 0 0 0 0 22 'crystal symmetry operation' 19_555 -x,-z,-y -1 0 0 0 0 -1 0 -1 0 0 0 0 23 'crystal symmetry operation' 20_555 x,-z,y 1 0 0 0 0 -1 0 1 0 0 0 0 24 'crystal symmetry operation' 21_555 z,y,-x 0 0 1 0 1 0 -1 0 0 0 0 0 25 'crystal symmetry operation' 22_555 z,-y,x 0 0 1 0 -1 0 1 0 0 0 0 0 26 'crystal symmetry operation' 23_555 -z,y,x 0 0 -1 0 1 0 1 0 0 0 0 0 27 'crystal symmetry operation' 24_555 -z,-y,-x 0 0 -1 0 -1 0 -1 0 0 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H35 N7 O13 P2 S' _chem_comp.formula_weight 687.554 _chem_comp.id COD _chem_comp.mon_nstd_flag . _chem_comp.name 'DEPHOSPHO COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 COD sing 70 n y N1 C6 COD doub 71 n y C2 N3 COD doub 72 n y C2 HC2 COD sing 73 n n N3 C4 COD sing 74 n y C4 C5 COD doub 75 n y C4 N10 COD sing 76 n y C5 C6 COD sing 77 n y C5 N8 COD sing 78 n y C6 N7 COD sing 79 n n N7 HN71 COD sing 80 n n N7 HN72 COD sing 81 n n N8 C9 COD doub 82 n y C9 N10 COD sing 83 n y C9 HC9 COD sing 84 n n N10 C11 COD sing 85 n n C11 C12 COD sing 86 n n C11 O17 COD sing 87 n n C11 HC11 COD sing 88 n n C12 O13 COD sing 89 n n C12 C14 COD sing 90 n n C12 HC12 COD sing 91 n n O13 HO13 COD sing 92 n n C14 O15 COD sing 93 n n C14 C16 COD sing 94 n n C14 HC14 COD sing 95 n n O15 HO15 COD sing 96 n n C16 O17 COD sing 97 n n C16 C18 COD sing 98 n n C16 HC16 COD sing 99 n n C18 O19 COD sing 100 n n C18 H181 COD sing 101 n n C18 H182 COD sing 102 n n O19 P20 COD sing 103 n n P20 O21 COD sing 104 n n P20 O22 COD doub 105 n n P20 O23 COD sing 106 n n O21 HO21 COD sing 107 n n O23 P24 COD sing 108 n n P24 O25 COD sing 109 n n P24 O26 COD doub 110 n n P24 O27 COD sing 111 n n O25 HO25 COD sing 112 n n O27 C28 COD sing 113 n n C28 C29 COD sing 114 n n C28 H281 COD sing 115 n n C28 H282 COD sing 116 n n C29 C30 COD sing 117 n n C29 C31 COD sing 118 n n C29 C32 COD sing 119 n n C30 H301 COD sing 120 n n C30 H302 COD sing 121 n n C30 H303 COD sing 122 n n C31 H311 COD sing 123 n n C31 H312 COD sing 124 n n C31 H313 COD sing 125 n n C32 O33 COD sing 126 n n C32 C34 COD sing 127 n n C32 HC32 COD sing 128 n n O33 HO33 COD sing 129 n n C34 O35 COD doub 130 n n C34 N36 COD sing 131 n n N36 C37 COD sing 132 n n N36 HN36 COD sing 133 n n C37 C38 COD sing 134 n n C37 H371 COD sing 135 n n C37 H372 COD sing 136 n n C38 C39 COD sing 137 n n C38 H381 COD sing 138 n n C38 H382 COD sing 139 n n C39 O40 COD doub 140 n n C39 N41 COD sing 141 n n N41 C42 COD sing 142 n n N41 HN41 COD sing 143 n n C42 C43 COD sing 144 n n C42 H421 COD sing 145 n n C42 H422 COD sing 146 n n C43 S44 COD sing 147 n n C43 H431 COD sing 148 n n C43 H432 COD sing 149 n n S44 HS44 COD sing 150 n n # _atom_sites.entry_id 3PXU _atom_sites.fract_transf_matrix[1][1] 0.007454 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007454 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007454 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 COD A 1 201 201 COD COD . C 3 GOL A 1 202 202 GOL GOL . D 3 GOL A 1 203 203 GOL GOL . E 4 SO4 A 1 204 204 SO4 SO4 . F 4 SO4 A 1 205 205 SO4 SO4 . G 5 HOH A 1 167 1 HOH HOH . G 5 HOH A 2 168 2 HOH HOH . G 5 HOH A 3 169 3 HOH HOH . G 5 HOH A 4 170 4 HOH HOH . G 5 HOH A 5 171 5 HOH HOH . G 5 HOH A 6 172 6 HOH HOH . G 5 HOH A 7 173 7 HOH HOH . G 5 HOH A 8 174 8 HOH HOH . G 5 HOH A 9 175 9 HOH HOH . G 5 HOH A 10 176 10 HOH HOH . G 5 HOH A 11 177 11 HOH HOH . G 5 HOH A 12 178 12 HOH HOH . G 5 HOH A 13 179 13 HOH HOH . G 5 HOH A 14 180 14 HOH HOH . G 5 HOH A 15 181 15 HOH HOH . G 5 HOH A 16 182 16 HOH HOH . G 5 HOH A 17 183 17 HOH HOH . G 5 HOH A 18 184 18 HOH HOH . G 5 HOH A 19 185 19 HOH HOH . G 5 HOH A 20 186 20 HOH HOH . G 5 HOH A 21 187 21 HOH HOH . G 5 HOH A 22 188 22 HOH HOH . G 5 HOH A 23 189 23 HOH HOH . G 5 HOH A 24 190 24 HOH HOH . G 5 HOH A 25 191 25 HOH HOH . G 5 HOH A 26 192 26 HOH HOH . G 5 HOH A 27 193 27 HOH HOH . G 5 HOH A 28 194 28 HOH HOH . G 5 HOH A 29 195 29 HOH HOH . G 5 HOH A 30 196 30 HOH HOH . G 5 HOH A 31 197 31 HOH HOH . G 5 HOH A 32 198 32 HOH HOH . G 5 HOH A 33 199 33 HOH HOH . G 5 HOH A 34 200 34 HOH HOH . G 5 HOH A 35 206 35 HOH HOH . G 5 HOH A 36 207 36 HOH HOH . G 5 HOH A 37 208 37 HOH HOH . G 5 HOH A 38 209 38 HOH HOH . G 5 HOH A 39 210 39 HOH HOH . G 5 HOH A 40 211 40 HOH HOH . G 5 HOH A 41 212 41 HOH HOH . G 5 HOH A 42 213 42 HOH HOH . G 5 HOH A 43 214 43 HOH HOH . G 5 HOH A 44 215 44 HOH HOH . G 5 HOH A 45 216 45 HOH HOH . G 5 HOH A 46 217 46 HOH HOH . G 5 HOH A 47 218 47 HOH HOH . G 5 HOH A 48 219 48 HOH HOH . G 5 HOH A 49 220 49 HOH HOH . G 5 HOH A 50 221 50 HOH HOH . G 5 HOH A 51 222 51 HOH HOH . G 5 HOH A 52 223 52 HOH HOH . G 5 HOH A 53 224 53 HOH HOH . G 5 HOH A 54 225 54 HOH HOH . G 5 HOH A 55 226 55 HOH HOH . G 5 HOH A 56 227 56 HOH HOH . G 5 HOH A 57 228 57 HOH HOH . G 5 HOH A 58 229 58 HOH HOH . G 5 HOH A 59 230 59 HOH HOH . G 5 HOH A 60 231 60 HOH HOH . G 5 HOH A 61 232 61 HOH HOH . G 5 HOH A 62 233 62 HOH HOH . G 5 HOH A 63 234 63 HOH HOH . G 5 HOH A 64 235 64 HOH HOH . G 5 HOH A 65 236 65 HOH HOH . G 5 HOH A 66 237 66 HOH HOH . G 5 HOH A 67 238 67 HOH HOH . G 5 HOH A 68 239 68 HOH HOH . G 5 HOH A 69 240 69 HOH HOH . G 5 HOH A 70 241 70 HOH HOH . G 5 HOH A 71 242 71 HOH HOH . G 5 HOH A 72 243 72 HOH HOH . G 5 HOH A 73 244 73 HOH HOH . G 5 HOH A 74 245 74 HOH HOH . G 5 HOH A 75 246 75 HOH HOH . G 5 HOH A 76 247 76 HOH HOH . G 5 HOH A 77 248 77 HOH HOH . G 5 HOH A 78 249 79 HOH HOH . G 5 HOH A 79 250 80 HOH HOH . G 5 HOH A 80 251 81 HOH HOH . G 5 HOH A 81 252 82 HOH HOH . G 5 HOH A 82 253 83 HOH HOH . G 5 HOH A 83 254 84 HOH HOH . G 5 HOH A 84 255 85 HOH HOH . G 5 HOH A 85 256 86 HOH HOH . G 5 HOH A 86 257 87 HOH HOH . G 5 HOH A 87 258 88 HOH HOH . G 5 HOH A 88 259 89 HOH HOH . G 5 HOH A 89 260 90 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 COD . . . B 2 -21.227 42.721 -23.821 0.5 34.15 ? N1 COD 201 A 1 HETATM 2 C C2 COD . . . B 2 -22.225 42.956 -22.949 0.5 34.3 ? C2 COD 201 A 1 HETATM 3 N N3 COD . . . B 2 -22.743 42.034 -22.12 0.5 33.56 ? N3 COD 201 A 1 HETATM 4 C C4 COD . . . B 2 -22.254 40.786 -22.12 0.5 32.4 ? C4 COD 201 A 1 HETATM 5 C C5 COD . . . B 2 -21.152 40.44 -23.031 0.5 32.35 ? C5 COD 201 A 1 HETATM 6 C C6 COD . . . B 2 -20.648 41.515 -23.927 0.5 33.73 ? C6 COD 201 A 1 HETATM 7 N N7 COD . . . B 2 -19.647 41.333 -24.826 0.5 33.58 ? N7 COD 201 A 1 HETATM 8 N N8 COD . . . B 2 -20.899 39.136 -22.809 0.5 32.64 ? N8 COD 201 A 1 HETATM 9 C C9 COD . . . B 2 -21.74 38.694 -21.83 0.5 31.59 ? C9 COD 201 A 1 HETATM 10 N N10 COD . . . B 2 -22.556 39.698 -21.427 0.5 32.83 ? N10 COD 201 A 1 HETATM 11 C C11 COD . . . B 2 -23.63 39.675 -20.396 0.5 31.15 ? C11 COD 201 A 1 HETATM 12 C C12 COD . . . B 2 -24.134 38.279 -20.084 0.5 30.82 ? C12 COD 201 A 1 HETATM 13 O O13 COD . . . B 2 -25.192 37.956 -20.977 0.5 34.34 ? O13 COD 201 A 1 HETATM 14 C C14 COD . . . B 2 -24.715 38.473 -18.71 0.5 31.42 ? C14 COD 201 A 1 HETATM 15 O O15 COD . . . B 2 -25.944 39.19 -18.849 0.5 31.2 ? O15 COD 201 A 1 HETATM 16 C C16 COD . . . B 2 -23.746 39.439 -18.063 0.5 30.36 ? C16 COD 201 A 1 HETATM 17 O O17 COD . . . B 2 -23.217 40.228 -19.151 0.5 27.63 ? O17 COD 201 A 1 HETATM 18 C C18 COD . . . B 2 -22.672 38.643 -17.307 0.5 27.16 ? C18 COD 201 A 1 HETATM 19 O O19 COD . . . B 2 -22.033 37.645 -18.137 0.5 25.91 ? O19 COD 201 A 1 HETATM 20 P P20 COD . . . B 2 -21.456 36.263 -17.528 0.5 23.06 ? P20 COD 201 A 1 HETATM 21 O O21 COD . . . B 2 -21.476 35.235 -18.62 0.5 22.61 ? O21 COD 201 A 1 HETATM 22 O O22 COD . . . B 2 -20.14 36.632 -16.918 0.5 19.3 ? O22 COD 201 A 1 HETATM 23 O O23 COD . . . B 2 -22.547 35.884 -16.387 0.5 28.08 ? O23 COD 201 A 1 HETATM 24 P P24 COD . . . B 2 -23.628 34.655 -16.35 0.5 35.08 ? P24 COD 201 A 1 HETATM 25 O O25 COD . . . B 2 -24.342 34.472 -17.669 0.5 34.78 ? O25 COD 201 A 1 HETATM 26 O O26 COD . . . B 2 -22.934 33.46 -15.745 0.5 34.29 ? O26 COD 201 A 1 HETATM 27 O O27 COD . . . B 2 -24.73 35.133 -15.268 0.5 35.79 ? O27 COD 201 A 1 HETATM 28 C C28 COD . . . B 2 -25.711 34.221 -14.758 0.5 36.37 ? C28 COD 201 A 1 HETATM 29 C C29 COD . . . B 2 -25.771 34.298 -13.234 0.5 36.23 ? C29 COD 201 A 1 HETATM 30 C C30 COD . . . B 2 -24.35 34.186 -12.728 0.5 35.46 ? C30 COD 201 A 1 HETATM 31 C C31 COD . . . B 2 -26.383 35.597 -12.753 0.5 34.28 ? C31 COD 201 A 1 HETATM 32 C C32 COD . . . B 2 -26.637 33.159 -12.702 0.5 37.25 ? C32 COD 201 A 1 HETATM 33 O O33 COD . . . B 2 -25.923 31.919 -12.79 0.5 38.96 ? O33 COD 201 A 1 HETATM 34 C C34 COD . . . B 2 -27.041 33.397 -11.272 0.5 37.91 ? C34 COD 201 A 1 HETATM 35 O O35 COD . . . B 2 -27.539 34.462 -10.965 0.5 37.54 ? O35 COD 201 A 1 HETATM 36 N N36 COD . . . B 2 -26.843 32.383 -10.414 0.5 37.02 ? N36 COD 201 A 1 HETATM 37 C C37 COD . . . B 2 -26.801 32.533 -8.966 0.5 36.85 ? C37 COD 201 A 1 HETATM 38 C C38 COD . . . B 2 -27.666 31.526 -8.204 0.5 34.23 ? C38 COD 201 A 1 HETATM 39 C C39 COD . . . B 2 -29.125 31.576 -8.641 0.5 34.44 ? C39 COD 201 A 1 HETATM 40 O O40 COD . . . B 2 -29.963 32.161 -7.979 0.5 32.02 ? O40 COD 201 A 1 HETATM 41 N N41 COD . . . B 2 -29.47 30.969 -9.772 0.5 35.73 ? N41 COD 201 A 1 HETATM 42 C C42 COD . . . B 2 -30.778 31.236 -10.364 0.5 38.12 ? C42 COD 201 A 1 HETATM 43 C C43 COD . . . B 2 -30.764 32.264 -11.49 0.5 39.25 ? C43 COD 201 A 1 HETATM 44 S S44 COD . . . B 2 -32.459 32.641 -12.046 0.5 43.53 ? S44 COD 201 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 44 #