data_3PY0 # _model_server_result.job_id sE4byOEPJoBobZPACQLSzw _model_server_result.datetime_utc '2024-11-06 00:42:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3py0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 3PY0 # _exptl.entry_id 3PY0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 241.245 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3Z)-3-(1H-IMIDAZOL-5-YLMETHYLENE)-5-METHOXY-1H-INDOL-2(3H)-ONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3PY0 _cell.length_a 53.54 _cell.length_b 71.92 _cell.length_c 72.28 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PY0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C13 H11 N3 O2' _chem_comp.formula_weight 241.245 _chem_comp.id SU9 _chem_comp.mon_nstd_flag . _chem_comp.name (3Z)-3-(1H-IMIDAZOL-5-YLMETHYLENE)-5-METHOXY-1H-INDOL-2(3H)-ONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms SU9516 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N5' C4' SU9 sing 303 n y N5' C1' SU9 sing 304 n y N5' H5' SU9 sing 305 n n C4' N3' SU9 doub 306 n y C4' H4' SU9 sing 307 n n N3' C2' SU9 sing 308 n y C2' C1' SU9 doub 309 n y C2' H2' SU9 sing 310 n n C1' C6' SU9 sing 311 n n C6' C9 SU9 doub 312 z n C6' H6' SU9 sing 313 n n C9 C8 SU9 sing 314 n n C9 C4 SU9 sing 315 n n C8 O10 SU9 doub 316 n n C8 N7 SU9 sing 317 n n N7 C5 SU9 sing 318 n n N7 HN7 SU9 sing 319 n n C5 C6 SU9 doub 320 n y C5 C4 SU9 sing 321 n y C6 C1 SU9 sing 322 n y C6 H6 SU9 sing 323 n n C1 C2 SU9 doub 324 n y C1 H1 SU9 sing 325 n n C2 O11 SU9 sing 326 n n C2 C3 SU9 sing 327 n y O11 C12 SU9 sing 328 n n C12 H121 SU9 sing 329 n n C12 H122 SU9 sing 330 n n C12 H123 SU9 sing 331 n n C3 C4 SU9 doub 332 n y C3 H3 SU9 sing 333 n n # _atom_sites.entry_id 3PY0 _atom_sites.fract_transf_matrix[1][1] 0.018678 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013904 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013835 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 299 1 EDO EDO . C 3 PO4 A 1 300 1 PO4 PO4 . D 4 SU9 A 1 301 1 SU9 SU9 . E 5 HOH A 1 302 1 HOH WAT . E 5 HOH A 2 303 2 HOH WAT . E 5 HOH A 3 304 3 HOH WAT . E 5 HOH A 4 305 4 HOH WAT . E 5 HOH A 5 306 5 HOH WAT . E 5 HOH A 6 307 6 HOH WAT . E 5 HOH A 7 308 7 HOH WAT . E 5 HOH A 8 309 8 HOH WAT . E 5 HOH A 9 310 9 HOH WAT . E 5 HOH A 10 311 10 HOH WAT . E 5 HOH A 11 312 11 HOH WAT . E 5 HOH A 12 313 12 HOH WAT . E 5 HOH A 13 314 13 HOH WAT . E 5 HOH A 14 315 14 HOH WAT . E 5 HOH A 15 316 15 HOH WAT . E 5 HOH A 16 317 16 HOH WAT . E 5 HOH A 17 318 17 HOH WAT . E 5 HOH A 18 319 18 HOH WAT . E 5 HOH A 19 320 19 HOH WAT . E 5 HOH A 20 321 20 HOH WAT . E 5 HOH A 21 322 21 HOH WAT . E 5 HOH A 22 323 22 HOH WAT . E 5 HOH A 23 324 23 HOH WAT . E 5 HOH A 24 325 24 HOH WAT . E 5 HOH A 25 326 25 HOH WAT . E 5 HOH A 26 327 26 HOH WAT . E 5 HOH A 27 328 27 HOH WAT . E 5 HOH A 28 329 28 HOH WAT . E 5 HOH A 29 330 29 HOH WAT . E 5 HOH A 30 331 30 HOH WAT . E 5 HOH A 31 332 31 HOH WAT . E 5 HOH A 32 333 32 HOH WAT . E 5 HOH A 33 334 33 HOH WAT . E 5 HOH A 34 335 34 HOH WAT . E 5 HOH A 35 336 35 HOH WAT . E 5 HOH A 36 337 36 HOH WAT . E 5 HOH A 37 338 37 HOH WAT . E 5 HOH A 38 339 38 HOH WAT . E 5 HOH A 39 340 39 HOH WAT . E 5 HOH A 40 341 40 HOH WAT . E 5 HOH A 41 342 41 HOH WAT . E 5 HOH A 42 343 42 HOH WAT . E 5 HOH A 43 344 43 HOH WAT . E 5 HOH A 44 345 44 HOH WAT . E 5 HOH A 45 346 45 HOH WAT . E 5 HOH A 46 347 46 HOH WAT . E 5 HOH A 47 348 47 HOH WAT . E 5 HOH A 48 349 48 HOH WAT . E 5 HOH A 49 350 49 HOH WAT . E 5 HOH A 50 351 50 HOH WAT . E 5 HOH A 51 352 51 HOH WAT . E 5 HOH A 52 353 52 HOH WAT . E 5 HOH A 53 354 53 HOH WAT . E 5 HOH A 54 355 54 HOH WAT . E 5 HOH A 55 356 55 HOH WAT . E 5 HOH A 56 357 56 HOH WAT . E 5 HOH A 57 358 57 HOH WAT . E 5 HOH A 58 359 58 HOH WAT . E 5 HOH A 59 360 59 HOH WAT . E 5 HOH A 60 361 60 HOH WAT . E 5 HOH A 61 362 61 HOH WAT . E 5 HOH A 62 363 62 HOH WAT . E 5 HOH A 63 364 63 HOH WAT . E 5 HOH A 64 365 64 HOH WAT . E 5 HOH A 65 366 65 HOH WAT . E 5 HOH A 66 367 67 HOH WAT . E 5 HOH A 67 368 68 HOH WAT . E 5 HOH A 68 369 69 HOH WAT . E 5 HOH A 69 370 70 HOH WAT . E 5 HOH A 70 371 71 HOH WAT . E 5 HOH A 71 372 72 HOH WAT . E 5 HOH A 72 373 73 HOH WAT . E 5 HOH A 73 374 74 HOH WAT . E 5 HOH A 74 375 75 HOH WAT . E 5 HOH A 75 377 77 HOH WAT . E 5 HOH A 76 378 78 HOH WAT . E 5 HOH A 77 379 79 HOH WAT . E 5 HOH A 78 381 81 HOH WAT . E 5 HOH A 79 382 82 HOH WAT . E 5 HOH A 80 384 84 HOH WAT . E 5 HOH A 81 385 85 HOH WAT . E 5 HOH A 82 386 86 HOH WAT . E 5 HOH A 83 388 88 HOH WAT . E 5 HOH A 84 389 89 HOH WAT . E 5 HOH A 85 390 90 HOH WAT . E 5 HOH A 86 391 92 HOH WAT . E 5 HOH A 87 392 93 HOH WAT . E 5 HOH A 88 393 94 HOH WAT . E 5 HOH A 89 394 95 HOH WAT . E 5 HOH A 90 395 96 HOH WAT . E 5 HOH A 91 396 97 HOH WAT . E 5 HOH A 92 397 98 HOH WAT . E 5 HOH A 93 398 99 HOH WAT . E 5 HOH A 94 401 102 HOH WAT . E 5 HOH A 95 402 103 HOH WAT . E 5 HOH A 96 403 104 HOH WAT . E 5 HOH A 97 404 105 HOH WAT . E 5 HOH A 98 406 107 HOH WAT . E 5 HOH A 99 407 108 HOH WAT . E 5 HOH A 100 410 111 HOH WAT . E 5 HOH A 101 411 112 HOH WAT . E 5 HOH A 102 412 113 HOH WAT . E 5 HOH A 103 413 114 HOH WAT . E 5 HOH A 104 414 115 HOH WAT . E 5 HOH A 105 415 116 HOH WAT . E 5 HOH A 106 416 118 HOH WAT . E 5 HOH A 107 417 119 HOH WAT . E 5 HOH A 108 418 120 HOH WAT . E 5 HOH A 109 419 121 HOH WAT . E 5 HOH A 110 420 122 HOH WAT . E 5 HOH A 111 421 123 HOH WAT . E 5 HOH A 112 422 124 HOH WAT . E 5 HOH A 113 423 125 HOH WAT . E 5 HOH A 114 424 126 HOH WAT . E 5 HOH A 115 425 127 HOH WAT . E 5 HOH A 116 426 128 HOH WAT . E 5 HOH A 117 427 129 HOH WAT . E 5 HOH A 118 428 130 HOH WAT . E 5 HOH A 119 429 131 HOH WAT . E 5 HOH A 120 430 132 HOH WAT . E 5 HOH A 121 431 133 HOH WAT . E 5 HOH A 122 432 134 HOH WAT . E 5 HOH A 123 433 137 HOH WAT . E 5 HOH A 124 434 138 HOH WAT . E 5 HOH A 125 435 139 HOH WAT . E 5 HOH A 126 437 141 HOH WAT . E 5 HOH A 127 438 142 HOH WAT . E 5 HOH A 128 439 143 HOH WAT . E 5 HOH A 129 440 144 HOH WAT . E 5 HOH A 130 441 145 HOH WAT . E 5 HOH A 131 442 146 HOH WAT . E 5 HOH A 132 443 147 HOH WAT . E 5 HOH A 133 444 148 HOH WAT . E 5 HOH A 134 445 149 HOH WAT . E 5 HOH A 135 446 150 HOH WAT . E 5 HOH A 136 447 151 HOH WAT . E 5 HOH A 137 448 152 HOH WAT . E 5 HOH A 138 450 154 HOH WAT . E 5 HOH A 139 451 155 HOH WAT . E 5 HOH A 140 452 156 HOH WAT . E 5 HOH A 141 453 157 HOH WAT . E 5 HOH A 142 454 158 HOH WAT . E 5 HOH A 143 455 159 HOH WAT . E 5 HOH A 144 456 160 HOH WAT . E 5 HOH A 145 457 161 HOH WAT . E 5 HOH A 146 458 162 HOH WAT . E 5 HOH A 147 459 163 HOH WAT . E 5 HOH A 148 460 164 HOH WAT . E 5 HOH A 149 461 165 HOH WAT . E 5 HOH A 150 462 166 HOH WAT . E 5 HOH A 151 463 167 HOH WAT . E 5 HOH A 152 464 168 HOH WAT . E 5 HOH A 153 465 169 HOH WAT . E 5 HOH A 154 466 170 HOH WAT . E 5 HOH A 155 467 171 HOH WAT . E 5 HOH A 156 468 172 HOH WAT . E 5 HOH A 157 469 173 HOH WAT . E 5 HOH A 158 470 174 HOH WAT . E 5 HOH A 159 471 175 HOH WAT . E 5 HOH A 160 473 177 HOH WAT . E 5 HOH A 161 474 178 HOH WAT . E 5 HOH A 162 475 179 HOH WAT . E 5 HOH A 163 476 180 HOH WAT . E 5 HOH A 164 477 181 HOH WAT . E 5 HOH A 165 478 182 HOH WAT . E 5 HOH A 166 479 183 HOH WAT . E 5 HOH A 167 480 184 HOH WAT . E 5 HOH A 168 482 186 HOH WAT . E 5 HOH A 169 483 187 HOH WAT . E 5 HOH A 170 484 188 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N5' SU9 . . . D 4 -89.866 82.295 84.631 1 22.22 ? N5' SU9 301 A 1 HETATM 2 C C4' SU9 . . . D 4 -88.819 82.662 83.915 1 23.59 ? C4' SU9 301 A 1 HETATM 3 N N3' SU9 . . . D 4 -88.766 81.993 82.74 1 24.24 ? N3' SU9 301 A 1 HETATM 4 C C2' SU9 . . . D 4 -89.857 81.15 82.72 1 22.56 ? C2' SU9 301 A 1 HETATM 5 C C1' SU9 . . . D 4 -90.53 81.354 83.913 1 22.79 ? C1' SU9 301 A 1 HETATM 6 C C6' SU9 . . . D 4 -91.736 80.627 84.272 1 21.39 ? C6' SU9 301 A 1 HETATM 7 C C9 SU9 . . . D 4 -92.51 80.702 85.412 1 21.43 ? C9 SU9 301 A 1 HETATM 8 C C8 SU9 . . . D 4 -92.352 81.581 86.612 1 20.2 ? C8 SU9 301 A 1 HETATM 9 O O10 SU9 . . . D 4 -91.504 82.449 86.848 1 19.93 ? O10 SU9 301 A 1 HETATM 10 N N7 SU9 . . . D 4 -93.35 81.288 87.519 1 19.25 ? N7 SU9 301 A 1 HETATM 11 C C5 SU9 . . . D 4 -94.161 80.277 86.996 1 21.69 ? C5 SU9 301 A 1 HETATM 12 C C6 SU9 . . . D 4 -95.297 79.655 87.576 1 21.59 ? C6 SU9 301 A 1 HETATM 13 C C1 SU9 . . . D 4 -95.944 78.64 86.82 1 24.87 ? C1 SU9 301 A 1 HETATM 14 C C2 SU9 . . . D 4 -95.5 78.225 85.513 1 24.8 ? C2 SU9 301 A 1 HETATM 15 O O11 SU9 . . . D 4 -96.22 77.228 84.884 1 28.14 ? O11 SU9 301 A 1 HETATM 16 C C12 SU9 . . . D 4 -95.589 76.412 83.899 1 28.64 ? C12 SU9 301 A 1 HETATM 17 C C3 SU9 . . . D 4 -94.344 78.88 84.968 1 23 ? C3 SU9 301 A 1 HETATM 18 C C4 SU9 . . . D 4 -93.684 79.895 85.704 1 20.88 ? C4 SU9 301 A 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 18 #