data_3PY1 # _model_server_result.job_id YsQKHWVbTXgWQam9f5PrIQ _model_server_result.datetime_utc '2024-11-26 17:07:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3py1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":300}' # _entry.id 3PY1 # _exptl.entry_id 3PY1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 241.245 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3Z)-3-(1H-IMIDAZOL-5-YLMETHYLENE)-5-METHOXY-1H-INDOL-2(3H)-ONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3PY1 _cell.length_a 53.35 _cell.length_b 70.19 _cell.length_c 71.48 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PY1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C13 H11 N3 O2' _chem_comp.formula_weight 241.245 _chem_comp.id SU9 _chem_comp.mon_nstd_flag . _chem_comp.name (3Z)-3-(1H-IMIDAZOL-5-YLMETHYLENE)-5-METHOXY-1H-INDOL-2(3H)-ONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms SU9516 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N5' C4' SU9 sing 335 n y N5' C1' SU9 sing 336 n y N5' H5' SU9 sing 337 n n C4' N3' SU9 doub 338 n y C4' H4' SU9 sing 339 n n N3' C2' SU9 sing 340 n y C2' C1' SU9 doub 341 n y C2' H2' SU9 sing 342 n n C1' C6' SU9 sing 343 n n C6' C9 SU9 doub 344 z n C6' H6' SU9 sing 345 n n C9 C8 SU9 sing 346 n n C9 C4 SU9 sing 347 n n C8 O10 SU9 doub 348 n n C8 N7 SU9 sing 349 n n N7 C5 SU9 sing 350 n n N7 HN7 SU9 sing 351 n n C5 C6 SU9 doub 352 n y C5 C4 SU9 sing 353 n y C6 C1 SU9 sing 354 n y C6 H6 SU9 sing 355 n n C1 C2 SU9 doub 356 n y C1 H1 SU9 sing 357 n n C2 O11 SU9 sing 358 n n C2 C3 SU9 sing 359 n y O11 C12 SU9 sing 360 n n C12 H121 SU9 sing 361 n n C12 H122 SU9 sing 362 n n C12 H123 SU9 sing 363 n n C3 C4 SU9 doub 364 n y C3 H3 SU9 sing 365 n n # _atom_sites.entry_id 3PY1 _atom_sites.fract_transf_matrix[1][1] 0.018744 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014247 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01399 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 299 1 EDO EDO . C 3 SU9 A 1 300 1 SU9 SU9 . D 4 2AN A 1 301 1 2AN 2AN . E 4 2AN A 1 302 2 2AN 2AN . F 5 HOH A 1 303 1 HOH WAT . F 5 HOH A 2 304 2 HOH WAT . F 5 HOH A 3 305 3 HOH WAT . F 5 HOH A 4 306 4 HOH WAT . F 5 HOH A 5 307 5 HOH WAT . F 5 HOH A 6 308 6 HOH WAT . F 5 HOH A 7 309 7 HOH WAT . F 5 HOH A 8 310 8 HOH WAT . F 5 HOH A 9 311 9 HOH WAT . F 5 HOH A 10 312 10 HOH WAT . F 5 HOH A 11 313 11 HOH WAT . F 5 HOH A 12 314 13 HOH WAT . F 5 HOH A 13 315 14 HOH WAT . F 5 HOH A 14 316 15 HOH WAT . F 5 HOH A 15 317 16 HOH WAT . F 5 HOH A 16 318 17 HOH WAT . F 5 HOH A 17 319 18 HOH WAT . F 5 HOH A 18 320 19 HOH WAT . F 5 HOH A 19 321 20 HOH WAT . F 5 HOH A 20 322 21 HOH WAT . F 5 HOH A 21 323 22 HOH WAT . F 5 HOH A 22 324 23 HOH WAT . F 5 HOH A 23 325 24 HOH WAT . F 5 HOH A 24 326 25 HOH WAT . F 5 HOH A 25 327 26 HOH WAT . F 5 HOH A 26 328 27 HOH WAT . F 5 HOH A 27 329 28 HOH WAT . F 5 HOH A 28 330 29 HOH WAT . F 5 HOH A 29 331 30 HOH WAT . F 5 HOH A 30 332 31 HOH WAT . F 5 HOH A 31 333 32 HOH WAT . F 5 HOH A 32 334 33 HOH WAT . F 5 HOH A 33 335 34 HOH WAT . F 5 HOH A 34 336 35 HOH WAT . F 5 HOH A 35 337 36 HOH WAT . F 5 HOH A 36 338 37 HOH WAT . F 5 HOH A 37 339 38 HOH WAT . F 5 HOH A 38 340 39 HOH WAT . F 5 HOH A 39 341 40 HOH WAT . F 5 HOH A 40 342 41 HOH WAT . F 5 HOH A 41 343 42 HOH WAT . F 5 HOH A 42 344 43 HOH WAT . F 5 HOH A 43 345 44 HOH WAT . F 5 HOH A 44 346 45 HOH WAT . F 5 HOH A 45 347 46 HOH WAT . F 5 HOH A 46 348 47 HOH WAT . F 5 HOH A 47 349 48 HOH WAT . F 5 HOH A 48 350 51 HOH WAT . F 5 HOH A 49 351 52 HOH WAT . F 5 HOH A 50 352 54 HOH WAT . F 5 HOH A 51 353 55 HOH WAT . F 5 HOH A 52 354 56 HOH WAT . F 5 HOH A 53 355 57 HOH WAT . F 5 HOH A 54 356 58 HOH WAT . F 5 HOH A 55 357 60 HOH WAT . F 5 HOH A 56 358 61 HOH WAT . F 5 HOH A 57 359 62 HOH WAT . F 5 HOH A 58 360 63 HOH WAT . F 5 HOH A 59 361 64 HOH WAT . F 5 HOH A 60 362 65 HOH WAT . F 5 HOH A 61 363 66 HOH WAT . F 5 HOH A 62 364 67 HOH WAT . F 5 HOH A 63 365 68 HOH WAT . F 5 HOH A 64 366 69 HOH WAT . F 5 HOH A 65 367 70 HOH WAT . F 5 HOH A 66 368 71 HOH WAT . F 5 HOH A 67 369 72 HOH WAT . F 5 HOH A 68 370 74 HOH WAT . F 5 HOH A 69 372 76 HOH WAT . F 5 HOH A 70 373 77 HOH WAT . F 5 HOH A 71 374 78 HOH WAT . F 5 HOH A 72 375 79 HOH WAT . F 5 HOH A 73 376 80 HOH WAT . F 5 HOH A 74 378 82 HOH WAT . F 5 HOH A 75 379 84 HOH WAT . F 5 HOH A 76 380 85 HOH WAT . F 5 HOH A 77 381 86 HOH WAT . F 5 HOH A 78 383 88 HOH WAT . F 5 HOH A 79 384 89 HOH WAT . F 5 HOH A 80 385 90 HOH WAT . F 5 HOH A 81 386 92 HOH WAT . F 5 HOH A 82 387 93 HOH WAT . F 5 HOH A 83 388 94 HOH WAT . F 5 HOH A 84 389 95 HOH WAT . F 5 HOH A 85 390 97 HOH WAT . F 5 HOH A 86 391 100 HOH WAT . F 5 HOH A 87 392 101 HOH WAT . F 5 HOH A 88 394 103 HOH WAT . F 5 HOH A 89 395 104 HOH WAT . F 5 HOH A 90 396 105 HOH WAT . F 5 HOH A 91 397 106 HOH WAT . F 5 HOH A 92 398 107 HOH WAT . F 5 HOH A 93 399 108 HOH WAT . F 5 HOH A 94 400 109 HOH WAT . F 5 HOH A 95 401 111 HOH WAT . F 5 HOH A 96 403 113 HOH WAT . F 5 HOH A 97 404 114 HOH WAT . F 5 HOH A 98 405 115 HOH WAT . F 5 HOH A 99 406 116 HOH WAT . F 5 HOH A 100 407 117 HOH WAT . F 5 HOH A 101 408 118 HOH WAT . F 5 HOH A 102 409 119 HOH WAT . F 5 HOH A 103 410 120 HOH WAT . F 5 HOH A 104 411 121 HOH WAT . F 5 HOH A 105 412 122 HOH WAT . F 5 HOH A 106 414 125 HOH WAT . F 5 HOH A 107 415 126 HOH WAT . F 5 HOH A 108 416 127 HOH WAT . F 5 HOH A 109 417 128 HOH WAT . F 5 HOH A 110 418 129 HOH WAT . F 5 HOH A 111 419 130 HOH WAT . F 5 HOH A 112 420 131 HOH WAT . F 5 HOH A 113 421 132 HOH WAT . F 5 HOH A 114 422 133 HOH WAT . F 5 HOH A 115 423 134 HOH WAT . F 5 HOH A 116 424 135 HOH WAT . F 5 HOH A 117 425 136 HOH WAT . F 5 HOH A 118 426 137 HOH WAT . F 5 HOH A 119 428 139 HOH WAT . F 5 HOH A 120 429 140 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N5' SU9 . . . C 3 -75.362 -97.691 29.682 1 18.74 ? N5' SU9 300 A 1 HETATM 2 C C4' SU9 . . . C 3 -74.254 -96.976 29.732 1 18.96 ? C4' SU9 300 A 1 HETATM 3 N N3' SU9 . . . C 3 -74.334 -95.889 28.931 1 20.68 ? N3' SU9 300 A 1 HETATM 4 C C2' SU9 . . . C 3 -75.58 -95.928 28.334 1 20.11 ? C2' SU9 300 A 1 HETATM 5 C C1' SU9 . . . C 3 -76.199 -97.059 28.818 1 19.77 ? C1' SU9 300 A 1 HETATM 6 C C6' SU9 . . . C 3 -77.551 -97.43 28.399 1 19.35 ? C6' SU9 300 A 1 HETATM 7 C C9 SU9 . . . C 3 -78.32 -98.504 28.767 1 21.16 ? C9 SU9 300 A 1 HETATM 8 C C8 SU9 . . . C 3 -78.023 -99.564 29.676 1 20.6 ? C8 SU9 300 A 1 HETATM 9 O O10 SU9 . . . C 3 -77.004 -99.757 30.347 1 21.7 ? O10 SU9 300 A 1 HETATM 10 N N7 SU9 . . . C 3 -79.088 -100.441 29.737 1 21.44 ? N7 SU9 300 A 1 HETATM 11 C C5 SU9 . . . C 3 -80.097 -99.989 28.885 1 20.96 ? C5 SU9 300 A 1 HETATM 12 C C6 SU9 . . . C 3 -81.382 -100.548 28.595 1 21.65 ? C6 SU9 300 A 1 HETATM 13 C C1 SU9 . . . C 3 -82.217 -99.846 27.664 1 21.42 ? C1 SU9 300 A 1 HETATM 14 C C2 SU9 . . . C 3 -81.814 -98.618 27.02 1 23.62 ? C2 SU9 300 A 1 HETATM 15 O O11 SU9 . . . C 3 -82.71 -98.028 26.148 1 25.01 ? O11 SU9 300 A 1 HETATM 16 C C12 SU9 . . . C 3 -82.361 -96.82 25.493 1 31.76 ? C12 SU9 300 A 1 HETATM 17 C C3 SU9 . . . C 3 -80.511 -98.11 27.346 1 23.2 ? C3 SU9 300 A 1 HETATM 18 C C4 SU9 . . . C 3 -79.669 -98.793 28.268 1 21.7 ? C4 SU9 300 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 18 #