data_3PY1
#
_model_server_result.job_id            1IsWXYMovyqNKnXCqm0ftw 
_model_server_result.datetime_utc      '2024-11-06 00:38:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3py1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":300}' 
#
_entry.id    3PY1 
#
_exptl.entry_id    3PY1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              241.245 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (3Z)-3-(1H-IMIDAZOL-5-YLMETHYLENE)-5-METHOXY-1H-INDOL-2(3H)-ONE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3PY1 
_cell.length_a            53.35 
_cell.length_b            70.19 
_cell.length_c            71.48 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3PY1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C13 H11 N3 O2' 
_chem_comp.formula_weight    241.245 
_chem_comp.id                SU9 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (3Z)-3-(1H-IMIDAZOL-5-YLMETHYLENE)-5-METHOXY-1H-INDOL-2(3H)-ONE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     SU9516 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N5' C4' SU9 sing 335 n y 
N5' C1' SU9 sing 336 n y 
N5' H5' SU9 sing 337 n n 
C4' N3' SU9 doub 338 n y 
C4' H4' SU9 sing 339 n n 
N3' C2' SU9 sing 340 n y 
C2' C1' SU9 doub 341 n y 
C2' H2' SU9 sing 342 n n 
C1' C6' SU9 sing 343 n n 
C6' C9 SU9 doub 344 z n 
C6' H6' SU9 sing 345 n n 
C9 C8 SU9 sing 346 n n 
C9 C4 SU9 sing 347 n n 
C8 O10 SU9 doub 348 n n 
C8 N7 SU9 sing 349 n n 
N7 C5 SU9 sing 350 n n 
N7 HN7 SU9 sing 351 n n 
C5 C6 SU9 doub 352 n y 
C5 C4 SU9 sing 353 n y 
C6 C1 SU9 sing 354 n y 
C6 H6 SU9 sing 355 n n 
C1 C2 SU9 doub 356 n y 
C1 H1 SU9 sing 357 n n 
C2 O11 SU9 sing 358 n n 
C2 C3 SU9 sing 359 n y 
O11 C12 SU9 sing 360 n n 
C12 H121 SU9 sing 361 n n 
C12 H122 SU9 sing 362 n n 
C12 H123 SU9 sing 363 n n 
C3 C4 SU9 doub 364 n y 
C3 H3 SU9 sing 365 n n 
#
_atom_sites.entry_id                     3PY1 
_atom_sites.fract_transf_matrix[1][1]    0.018744 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014247 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01399 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 EDO A 1 299 1 EDO EDO . 
C 3 SU9 A 1 300 1 SU9 SU9 . 
D 4 2AN A 1 301 1 2AN 2AN . 
E 4 2AN A 1 302 2 2AN 2AN . 
F 5 HOH A 1 303 1 HOH WAT . 
F 5 HOH A 2 304 2 HOH WAT . 
F 5 HOH A 3 305 3 HOH WAT . 
F 5 HOH A 4 306 4 HOH WAT . 
F 5 HOH A 5 307 5 HOH WAT . 
F 5 HOH A 6 308 6 HOH WAT . 
F 5 HOH A 7 309 7 HOH WAT . 
F 5 HOH A 8 310 8 HOH WAT . 
F 5 HOH A 9 311 9 HOH WAT . 
F 5 HOH A 10 312 10 HOH WAT . 
F 5 HOH A 11 313 11 HOH WAT . 
F 5 HOH A 12 314 13 HOH WAT . 
F 5 HOH A 13 315 14 HOH WAT . 
F 5 HOH A 14 316 15 HOH WAT . 
F 5 HOH A 15 317 16 HOH WAT . 
F 5 HOH A 16 318 17 HOH WAT . 
F 5 HOH A 17 319 18 HOH WAT . 
F 5 HOH A 18 320 19 HOH WAT . 
F 5 HOH A 19 321 20 HOH WAT . 
F 5 HOH A 20 322 21 HOH WAT . 
F 5 HOH A 21 323 22 HOH WAT . 
F 5 HOH A 22 324 23 HOH WAT . 
F 5 HOH A 23 325 24 HOH WAT . 
F 5 HOH A 24 326 25 HOH WAT . 
F 5 HOH A 25 327 26 HOH WAT . 
F 5 HOH A 26 328 27 HOH WAT . 
F 5 HOH A 27 329 28 HOH WAT . 
F 5 HOH A 28 330 29 HOH WAT . 
F 5 HOH A 29 331 30 HOH WAT . 
F 5 HOH A 30 332 31 HOH WAT . 
F 5 HOH A 31 333 32 HOH WAT . 
F 5 HOH A 32 334 33 HOH WAT . 
F 5 HOH A 33 335 34 HOH WAT . 
F 5 HOH A 34 336 35 HOH WAT . 
F 5 HOH A 35 337 36 HOH WAT . 
F 5 HOH A 36 338 37 HOH WAT . 
F 5 HOH A 37 339 38 HOH WAT . 
F 5 HOH A 38 340 39 HOH WAT . 
F 5 HOH A 39 341 40 HOH WAT . 
F 5 HOH A 40 342 41 HOH WAT . 
F 5 HOH A 41 343 42 HOH WAT . 
F 5 HOH A 42 344 43 HOH WAT . 
F 5 HOH A 43 345 44 HOH WAT . 
F 5 HOH A 44 346 45 HOH WAT . 
F 5 HOH A 45 347 46 HOH WAT . 
F 5 HOH A 46 348 47 HOH WAT . 
F 5 HOH A 47 349 48 HOH WAT . 
F 5 HOH A 48 350 51 HOH WAT . 
F 5 HOH A 49 351 52 HOH WAT . 
F 5 HOH A 50 352 54 HOH WAT . 
F 5 HOH A 51 353 55 HOH WAT . 
F 5 HOH A 52 354 56 HOH WAT . 
F 5 HOH A 53 355 57 HOH WAT . 
F 5 HOH A 54 356 58 HOH WAT . 
F 5 HOH A 55 357 60 HOH WAT . 
F 5 HOH A 56 358 61 HOH WAT . 
F 5 HOH A 57 359 62 HOH WAT . 
F 5 HOH A 58 360 63 HOH WAT . 
F 5 HOH A 59 361 64 HOH WAT . 
F 5 HOH A 60 362 65 HOH WAT . 
F 5 HOH A 61 363 66 HOH WAT . 
F 5 HOH A 62 364 67 HOH WAT . 
F 5 HOH A 63 365 68 HOH WAT . 
F 5 HOH A 64 366 69 HOH WAT . 
F 5 HOH A 65 367 70 HOH WAT . 
F 5 HOH A 66 368 71 HOH WAT . 
F 5 HOH A 67 369 72 HOH WAT . 
F 5 HOH A 68 370 74 HOH WAT . 
F 5 HOH A 69 372 76 HOH WAT . 
F 5 HOH A 70 373 77 HOH WAT . 
F 5 HOH A 71 374 78 HOH WAT . 
F 5 HOH A 72 375 79 HOH WAT . 
F 5 HOH A 73 376 80 HOH WAT . 
F 5 HOH A 74 378 82 HOH WAT . 
F 5 HOH A 75 379 84 HOH WAT . 
F 5 HOH A 76 380 85 HOH WAT . 
F 5 HOH A 77 381 86 HOH WAT . 
F 5 HOH A 78 383 88 HOH WAT . 
F 5 HOH A 79 384 89 HOH WAT . 
F 5 HOH A 80 385 90 HOH WAT . 
F 5 HOH A 81 386 92 HOH WAT . 
F 5 HOH A 82 387 93 HOH WAT . 
F 5 HOH A 83 388 94 HOH WAT . 
F 5 HOH A 84 389 95 HOH WAT . 
F 5 HOH A 85 390 97 HOH WAT . 
F 5 HOH A 86 391 100 HOH WAT . 
F 5 HOH A 87 392 101 HOH WAT . 
F 5 HOH A 88 394 103 HOH WAT . 
F 5 HOH A 89 395 104 HOH WAT . 
F 5 HOH A 90 396 105 HOH WAT . 
F 5 HOH A 91 397 106 HOH WAT . 
F 5 HOH A 92 398 107 HOH WAT . 
F 5 HOH A 93 399 108 HOH WAT . 
F 5 HOH A 94 400 109 HOH WAT . 
F 5 HOH A 95 401 111 HOH WAT . 
F 5 HOH A 96 403 113 HOH WAT . 
F 5 HOH A 97 404 114 HOH WAT . 
F 5 HOH A 98 405 115 HOH WAT . 
F 5 HOH A 99 406 116 HOH WAT . 
F 5 HOH A 100 407 117 HOH WAT . 
F 5 HOH A 101 408 118 HOH WAT . 
F 5 HOH A 102 409 119 HOH WAT . 
F 5 HOH A 103 410 120 HOH WAT . 
F 5 HOH A 104 411 121 HOH WAT . 
F 5 HOH A 105 412 122 HOH WAT . 
F 5 HOH A 106 414 125 HOH WAT . 
F 5 HOH A 107 415 126 HOH WAT . 
F 5 HOH A 108 416 127 HOH WAT . 
F 5 HOH A 109 417 128 HOH WAT . 
F 5 HOH A 110 418 129 HOH WAT . 
F 5 HOH A 111 419 130 HOH WAT . 
F 5 HOH A 112 420 131 HOH WAT . 
F 5 HOH A 113 421 132 HOH WAT . 
F 5 HOH A 114 422 133 HOH WAT . 
F 5 HOH A 115 423 134 HOH WAT . 
F 5 HOH A 116 424 135 HOH WAT . 
F 5 HOH A 117 425 136 HOH WAT . 
F 5 HOH A 118 426 137 HOH WAT . 
F 5 HOH A 119 428 139 HOH WAT . 
F 5 HOH A 120 429 140 HOH WAT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N5' SU9 . . . C 3 -75.362 -97.691 29.682 1 18.74 ? N5' SU9 300 A 1 
HETATM 2 C C4' SU9 . . . C 3 -74.254 -96.976 29.732 1 18.96 ? C4' SU9 300 A 1 
HETATM 3 N N3' SU9 . . . C 3 -74.334 -95.889 28.931 1 20.68 ? N3' SU9 300 A 1 
HETATM 4 C C2' SU9 . . . C 3 -75.58 -95.928 28.334 1 20.11 ? C2' SU9 300 A 1 
HETATM 5 C C1' SU9 . . . C 3 -76.199 -97.059 28.818 1 19.77 ? C1' SU9 300 A 1 
HETATM 6 C C6' SU9 . . . C 3 -77.551 -97.43 28.399 1 19.35 ? C6' SU9 300 A 1 
HETATM 7 C C9 SU9 . . . C 3 -78.32 -98.504 28.767 1 21.16 ? C9 SU9 300 A 1 
HETATM 8 C C8 SU9 . . . C 3 -78.023 -99.564 29.676 1 20.6 ? C8 SU9 300 A 1 
HETATM 9 O O10 SU9 . . . C 3 -77.004 -99.757 30.347 1 21.7 ? O10 SU9 300 A 1 
HETATM 10 N N7 SU9 . . . C 3 -79.088 -100.441 29.737 1 21.44 ? N7 SU9 300 A 1 
HETATM 11 C C5 SU9 . . . C 3 -80.097 -99.989 28.885 1 20.96 ? C5 SU9 300 A 1 
HETATM 12 C C6 SU9 . . . C 3 -81.382 -100.548 28.595 1 21.65 ? C6 SU9 300 A 1 
HETATM 13 C C1 SU9 . . . C 3 -82.217 -99.846 27.664 1 21.42 ? C1 SU9 300 A 1 
HETATM 14 C C2 SU9 . . . C 3 -81.814 -98.618 27.02 1 23.62 ? C2 SU9 300 A 1 
HETATM 15 O O11 SU9 . . . C 3 -82.71 -98.028 26.148 1 25.01 ? O11 SU9 300 A 1 
HETATM 16 C C12 SU9 . . . C 3 -82.361 -96.82 25.493 1 31.76 ? C12 SU9 300 A 1 
HETATM 17 C C3 SU9 . . . C 3 -80.511 -98.11 27.346 1 23.2 ? C3 SU9 300 A 1 
HETATM 18 C C4 SU9 . . . C 3 -79.669 -98.793 28.268 1 21.7 ? C4 SU9 300 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           410 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           18 
#