data_3PYB
#
_model_server_result.job_id            ATb20fFMNBKrM0LR0z0-kw 
_model_server_result.datetime_utc      '2025-01-15 16:54:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3pyb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":911}' 
#
_entry.id    3PYB 
#
_exptl.entry_id    3PYB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              238.278 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PENTAETHYLENE GLYCOL' 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3PYB 
_cell.length_a            63.738 
_cell.length_b            188.554 
_cell.length_c            229.071 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3PYB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,G,H,N 1 1 
B,I,J,K,O 2 1 
C,L,M,P 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
? 3 M N N 
#
_chem_comp.formula           'C10 H22 O6' 
_chem_comp.formula_weight    238.278 
_chem_comp.id                1PE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PENTAETHYLENE GLYCOL' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     PEG400 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OH2 C12 1PE sing 1 n n 
OH2 HO2 1PE sing 2 n n 
C12 C22 1PE sing 3 n n 
C12 H121 1PE sing 4 n n 
C12 H122 1PE sing 5 n n 
C22 OH3 1PE sing 6 n n 
C22 H221 1PE sing 7 n n 
C22 H222 1PE sing 8 n n 
OH3 C23 1PE sing 9 n n 
C13 C23 1PE sing 10 n n 
C13 OH4 1PE sing 11 n n 
C13 H131 1PE sing 12 n n 
C13 H132 1PE sing 13 n n 
C23 H231 1PE sing 14 n n 
C23 H232 1PE sing 15 n n 
OH4 C24 1PE sing 16 n n 
C14 C24 1PE sing 17 n n 
C14 OH5 1PE sing 18 n n 
C14 H141 1PE sing 19 n n 
C14 H142 1PE sing 20 n n 
C24 H241 1PE sing 21 n n 
C24 H242 1PE sing 22 n n 
OH5 C25 1PE sing 23 n n 
C15 C25 1PE sing 24 n n 
C15 OH6 1PE sing 25 n n 
C15 H151 1PE sing 26 n n 
C15 H152 1PE sing 27 n n 
C25 H251 1PE sing 28 n n 
C25 H252 1PE sing 29 n n 
OH6 C26 1PE sing 30 n n 
C16 C26 1PE sing 31 n n 
C16 OH7 1PE sing 32 n n 
C16 H161 1PE sing 33 n n 
C16 H162 1PE sing 34 n n 
C26 H261 1PE sing 35 n n 
C26 H262 1PE sing 36 n n 
OH7 HO7 1PE sing 37 n n 
#
_atom_sites.entry_id                     3PYB 
_atom_sites.fract_transf_matrix[1][1]    0.015689 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005304 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004365 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 A3C A 1 901 901 A3C A3C . 
E 3 1PE A 1 911 911 1PE 1PE . 
F 3 1PE A 1 921 921 1PE 1PE . 
G 3 1PE A 1 931 931 1PE 1PE . 
H 3 1PE A 1 811 921 1PE 1PE . 
I 3 1PE B 1 911 911 1PE 1PE . 
J 3 1PE B 1 931 931 1PE 1PE . 
K 3 1PE B 1 921 921 1PE 1PE . 
L 3 1PE C 1 911 911 1PE 1PE . 
M 3 1PE C 1 931 931 1PE 1PE . 
N 4 HOH A 1 1 1 HOH HOH . 
N 4 HOH A 2 5 5 HOH HOH . 
N 4 HOH A 3 10 10 HOH HOH . 
N 4 HOH A 4 11 11 HOH HOH . 
N 4 HOH A 5 13 13 HOH HOH . 
N 4 HOH A 6 17 17 HOH HOH . 
N 4 HOH A 7 19 19 HOH HOH . 
N 4 HOH A 8 22 22 HOH HOH . 
N 4 HOH A 9 23 23 HOH HOH . 
N 4 HOH A 10 24 24 HOH HOH . 
N 4 HOH A 11 25 25 HOH HOH . 
N 4 HOH A 12 26 26 HOH HOH . 
N 4 HOH A 13 31 31 HOH HOH . 
N 4 HOH A 14 32 32 HOH HOH . 
N 4 HOH A 15 36 36 HOH HOH . 
N 4 HOH A 16 37 37 HOH HOH . 
N 4 HOH A 17 39 39 HOH HOH . 
N 4 HOH A 18 40 40 HOH HOH . 
N 4 HOH A 19 43 43 HOH HOH . 
N 4 HOH A 20 46 46 HOH HOH . 
N 4 HOH A 21 50 50 HOH HOH . 
N 4 HOH A 22 51 51 HOH HOH . 
N 4 HOH A 23 55 55 HOH HOH . 
N 4 HOH A 24 57 57 HOH HOH . 
N 4 HOH A 25 59 59 HOH HOH . 
N 4 HOH A 26 62 62 HOH HOH . 
N 4 HOH A 27 63 63 HOH HOH . 
N 4 HOH A 28 64 64 HOH HOH . 
N 4 HOH A 29 66 66 HOH HOH . 
N 4 HOH A 30 68 68 HOH HOH . 
N 4 HOH A 31 69 69 HOH HOH . 
N 4 HOH A 32 70 70 HOH HOH . 
N 4 HOH A 33 78 78 HOH HOH . 
N 4 HOH A 34 79 79 HOH HOH . 
N 4 HOH A 35 81 81 HOH HOH . 
N 4 HOH A 36 82 82 HOH HOH . 
N 4 HOH A 37 83 83 HOH HOH . 
N 4 HOH A 38 812 84 HOH HOH . 
N 4 HOH A 39 813 87 HOH HOH . 
N 4 HOH A 40 814 88 HOH HOH . 
N 4 HOH A 41 815 89 HOH HOH . 
N 4 HOH A 42 816 90 HOH HOH . 
N 4 HOH A 43 817 91 HOH HOH . 
N 4 HOH A 44 818 93 HOH HOH . 
N 4 HOH A 45 819 99 HOH HOH . 
N 4 HOH A 46 820 100 HOH HOH . 
N 4 HOH A 47 821 112 HOH HOH . 
N 4 HOH A 48 822 114 HOH HOH . 
N 4 HOH A 49 823 115 HOH HOH . 
N 4 HOH A 50 824 117 HOH HOH . 
N 4 HOH A 51 825 118 HOH HOH . 
N 4 HOH A 52 826 119 HOH HOH . 
N 4 HOH A 53 827 120 HOH HOH . 
N 4 HOH A 54 828 136 HOH HOH . 
N 4 HOH A 55 829 143 HOH HOH . 
N 4 HOH A 56 830 144 HOH HOH . 
N 4 HOH A 57 831 145 HOH HOH . 
N 4 HOH A 58 832 146 HOH HOH . 
N 4 HOH A 59 833 150 HOH HOH . 
N 4 HOH A 60 834 151 HOH HOH . 
N 4 HOH A 61 835 153 HOH HOH . 
N 4 HOH A 62 836 154 HOH HOH . 
N 4 HOH A 63 837 159 HOH HOH . 
N 4 HOH A 64 838 160 HOH HOH . 
N 4 HOH A 65 839 161 HOH HOH . 
N 4 HOH A 66 840 162 HOH HOH . 
N 4 HOH A 67 841 163 HOH HOH . 
N 4 HOH A 68 842 164 HOH HOH . 
N 4 HOH A 69 843 165 HOH HOH . 
N 4 HOH A 70 844 166 HOH HOH . 
N 4 HOH A 71 845 167 HOH HOH . 
N 4 HOH A 72 846 172 HOH HOH . 
N 4 HOH A 73 847 174 HOH HOH . 
N 4 HOH A 74 848 175 HOH HOH . 
N 4 HOH A 75 849 178 HOH HOH . 
N 4 HOH A 76 850 183 HOH HOH . 
N 4 HOH A 77 851 190 HOH HOH . 
N 4 HOH A 78 852 191 HOH HOH . 
N 4 HOH A 79 853 192 HOH HOH . 
N 4 HOH A 80 854 193 HOH HOH . 
N 4 HOH A 81 855 198 HOH HOH . 
N 4 HOH A 82 856 199 HOH HOH . 
N 4 HOH A 83 857 200 HOH HOH . 
N 4 HOH A 84 858 201 HOH HOH . 
O 4 HOH B 1 3 3 HOH HOH . 
O 4 HOH B 2 4 4 HOH HOH . 
O 4 HOH B 3 7 7 HOH HOH . 
O 4 HOH B 4 8 8 HOH HOH . 
O 4 HOH B 5 14 14 HOH HOH . 
O 4 HOH B 6 15 15 HOH HOH . 
O 4 HOH B 7 27 27 HOH HOH . 
O 4 HOH B 8 29 29 HOH HOH . 
O 4 HOH B 9 30 30 HOH HOH . 
O 4 HOH B 10 34 34 HOH HOH . 
O 4 HOH B 11 35 35 HOH HOH . 
O 4 HOH B 12 38 38 HOH HOH . 
O 4 HOH B 13 41 41 HOH HOH . 
O 4 HOH B 14 42 42 HOH HOH . 
O 4 HOH B 15 44 44 HOH HOH . 
O 4 HOH B 16 54 54 HOH HOH . 
O 4 HOH B 17 56 56 HOH HOH . 
O 4 HOH B 18 58 58 HOH HOH . 
O 4 HOH B 19 61 61 HOH HOH . 
O 4 HOH B 20 67 67 HOH HOH . 
O 4 HOH B 21 71 71 HOH HOH . 
O 4 HOH B 22 74 74 HOH HOH . 
O 4 HOH B 23 75 75 HOH HOH . 
O 4 HOH B 24 76 76 HOH HOH . 
O 4 HOH B 25 80 80 HOH HOH . 
O 4 HOH B 26 811 85 HOH HOH . 
O 4 HOH B 27 812 86 HOH HOH . 
O 4 HOH B 28 813 94 HOH HOH . 
O 4 HOH B 29 814 96 HOH HOH . 
O 4 HOH B 30 815 98 HOH HOH . 
O 4 HOH B 31 816 103 HOH HOH . 
O 4 HOH B 32 817 105 HOH HOH . 
O 4 HOH B 33 818 107 HOH HOH . 
O 4 HOH B 34 819 109 HOH HOH . 
O 4 HOH B 35 820 110 HOH HOH . 
O 4 HOH B 36 821 123 HOH HOH . 
O 4 HOH B 37 822 124 HOH HOH . 
O 4 HOH B 38 823 126 HOH HOH . 
O 4 HOH B 39 824 127 HOH HOH . 
O 4 HOH B 40 825 128 HOH HOH . 
O 4 HOH B 41 826 129 HOH HOH . 
O 4 HOH B 42 827 130 HOH HOH . 
O 4 HOH B 43 828 134 HOH HOH . 
O 4 HOH B 44 829 135 HOH HOH . 
O 4 HOH B 45 830 137 HOH HOH . 
O 4 HOH B 46 831 138 HOH HOH . 
O 4 HOH B 47 832 139 HOH HOH . 
O 4 HOH B 48 833 140 HOH HOH . 
O 4 HOH B 49 834 141 HOH HOH . 
O 4 HOH B 50 835 142 HOH HOH . 
O 4 HOH B 51 836 147 HOH HOH . 
O 4 HOH B 52 837 148 HOH HOH . 
O 4 HOH B 53 838 152 HOH HOH . 
O 4 HOH B 54 839 155 HOH HOH . 
O 4 HOH B 55 840 157 HOH HOH . 
O 4 HOH B 56 841 168 HOH HOH . 
O 4 HOH B 57 842 169 HOH HOH . 
O 4 HOH B 58 843 170 HOH HOH . 
O 4 HOH B 59 844 177 HOH HOH . 
O 4 HOH B 60 845 179 HOH HOH . 
O 4 HOH B 61 846 182 HOH HOH . 
O 4 HOH B 62 847 184 HOH HOH . 
O 4 HOH B 63 848 186 HOH HOH . 
O 4 HOH B 64 849 187 HOH HOH . 
O 4 HOH B 65 850 188 HOH HOH . 
O 4 HOH B 66 851 189 HOH HOH . 
O 4 HOH B 67 852 194 HOH HOH . 
O 4 HOH B 68 853 196 HOH HOH . 
P 4 HOH C 1 2 2 HOH HOH . 
P 4 HOH C 2 6 6 HOH HOH . 
P 4 HOH C 3 9 9 HOH HOH . 
P 4 HOH C 4 12 12 HOH HOH . 
P 4 HOH C 5 16 16 HOH HOH . 
P 4 HOH C 6 18 18 HOH HOH . 
P 4 HOH C 7 20 20 HOH HOH . 
P 4 HOH C 8 21 21 HOH HOH . 
P 4 HOH C 9 28 28 HOH HOH . 
P 4 HOH C 10 33 33 HOH HOH . 
P 4 HOH C 11 45 45 HOH HOH . 
P 4 HOH C 12 47 47 HOH HOH . 
P 4 HOH C 13 48 48 HOH HOH . 
P 4 HOH C 14 49 49 HOH HOH . 
P 4 HOH C 15 52 52 HOH HOH . 
P 4 HOH C 16 53 53 HOH HOH . 
P 4 HOH C 17 60 60 HOH HOH . 
P 4 HOH C 18 65 65 HOH HOH . 
P 4 HOH C 19 72 72 HOH HOH . 
P 4 HOH C 20 73 73 HOH HOH . 
P 4 HOH C 21 77 77 HOH HOH . 
P 4 HOH C 22 811 92 HOH HOH . 
P 4 HOH C 23 812 95 HOH HOH . 
P 4 HOH C 24 813 97 HOH HOH . 
P 4 HOH C 25 814 101 HOH HOH . 
P 4 HOH C 26 815 102 HOH HOH . 
P 4 HOH C 27 816 104 HOH HOH . 
P 4 HOH C 28 817 106 HOH HOH . 
P 4 HOH C 29 818 108 HOH HOH . 
P 4 HOH C 30 819 111 HOH HOH . 
P 4 HOH C 31 820 113 HOH HOH . 
P 4 HOH C 32 821 116 HOH HOH . 
P 4 HOH C 33 822 121 HOH HOH . 
P 4 HOH C 34 823 122 HOH HOH . 
P 4 HOH C 35 824 125 HOH HOH . 
P 4 HOH C 36 825 131 HOH HOH . 
P 4 HOH C 37 826 132 HOH HOH . 
P 4 HOH C 38 827 133 HOH HOH . 
P 4 HOH C 39 828 149 HOH HOH . 
P 4 HOH C 40 829 156 HOH HOH . 
P 4 HOH C 41 830 158 HOH HOH . 
P 4 HOH C 42 831 171 HOH HOH . 
P 4 HOH C 43 832 173 HOH HOH . 
P 4 HOH C 44 833 176 HOH HOH . 
P 4 HOH C 45 834 180 HOH HOH . 
P 4 HOH C 46 835 181 HOH HOH . 
P 4 HOH C 47 836 185 HOH HOH . 
P 4 HOH C 48 837 195 HOH HOH . 
P 4 HOH C 49 838 197 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OH2 1PE . . . E 3 7.576 -47.262 19.485 1 90.45 ? OH2 1PE 911 A 1 
HETATM 2 C C12 1PE . . . E 3 7.093 -48.323 18.656 1 87.93 ? C12 1PE 911 A 1 
HETATM 3 C C22 1PE . . . E 3 7.114 -47.888 17.188 1 90.12 ? C22 1PE 911 A 1 
HETATM 4 O OH3 1PE . . . E 3 6.078 -48.555 16.459 1 78.41 ? OH3 1PE 911 A 1 
HETATM 5 C C13 1PE . . . E 3 4.849 -47.633 14.582 1 70.92 ? C13 1PE 911 A 1 
HETATM 6 C C23 1PE . . . E 3 6.199 -48.137 15.096 1 76.95 ? C23 1PE 911 A 1 
HETATM 7 O OH4 1PE . . . E 3 4.363 -46.584 15.424 1 78.08 ? OH4 1PE 911 A 1 
HETATM 8 C C14 1PE . . . E 3 3.073 -44.596 14.947 1 76 ? C14 1PE 911 A 1 
HETATM 9 C C24 1PE . . . E 3 4.346 -45.389 14.641 1 80.59 ? C24 1PE 911 A 1 
HETATM 10 O OH5 1PE . . . E 3 3.099 -44.118 16.294 1 71.9 ? OH5 1PE 911 A 1 
HETATM 11 C C15 1PE . . . E 3 3.842 -42.077 17.392 1 69.58 ? C15 1PE 911 A 1 
HETATM 12 C C25 1PE . . . E 3 4.18 -43.187 16.39 1 69.87 ? C25 1PE 911 A 1 
HETATM 13 O OH6 1PE . . . E 3 3.096 -42.598 18.493 1 60.5 ? OH6 1PE 911 A 1 
HETATM 14 C C16 1PE . . . E 3 3.001 -42.708 20.916 1 72.82 ? C16 1PE 911 A 1 
HETATM 15 C C26 1PE . . . E 3 3.852 -42.363 19.686 1 68.99 ? C26 1PE 911 A 1 
HETATM 16 O OH7 1PE . . . E 3 3.347 -43.993 21.446 1 60.49 ? OH7 1PE 911 A 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           381 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           16 
#