data_3PYI # _model_server_result.job_id IGyAT6l_VvhfFgkvVdJgnw _model_server_result.datetime_utc '2024-10-18 14:31:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3pyi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":170}' # _entry.id 3PYI # _exptl.entry_id 3PYI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 195.237 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3PYI _cell.length_a 70.273 _cell.length_b 73.153 _cell.length_c 79.596 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PYI _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H13 N O4 S' _chem_comp.formula_weight 195.237 _chem_comp.id MES _chem_comp.mon_nstd_flag . _chem_comp.name '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 MES sing 218 n n O1 C6 MES sing 219 n n C2 C3 MES sing 220 n n C2 H21 MES sing 221 n n C2 H22 MES sing 222 n n C3 N4 MES sing 223 n n C3 H31 MES sing 224 n n C3 H32 MES sing 225 n n N4 C5 MES sing 226 n n N4 C7 MES sing 227 n n N4 HN4 MES sing 228 n n C5 C6 MES sing 229 n n C5 H51 MES sing 230 n n C5 H52 MES sing 231 n n C6 H61 MES sing 232 n n C6 H62 MES sing 233 n n C7 C8 MES sing 234 n n C7 H71 MES sing 235 n n C7 H72 MES sing 236 n n C8 S MES sing 237 n n C8 H81 MES sing 238 n n C8 H82 MES sing 239 n n S O1S MES doub 240 n n S O2S MES doub 241 n n S O3S MES sing 242 n n # _atom_sites.entry_id 3PYI _atom_sites.fract_transf_matrix[1][1] 0.01423 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01367 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012563 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PG4 B 1 169 1 PG4 PG4 . D 3 MES B 1 170 1 MES MES . E 2 PG4 B 1 171 1 PG4 PG4 . F 2 PG4 A 1 169 1 PG4 PG4 . G 2 PG4 A 1 170 1 PG4 PG4 . H 4 HOH B 1 172 2 HOH HOH . H 4 HOH B 2 173 4 HOH HOH . H 4 HOH B 3 174 5 HOH HOH . H 4 HOH B 4 175 6 HOH HOH . H 4 HOH B 5 176 7 HOH HOH . H 4 HOH B 6 177 9 HOH HOH . H 4 HOH B 7 178 10 HOH HOH . H 4 HOH B 8 179 11 HOH HOH . H 4 HOH B 9 180 12 HOH HOH . H 4 HOH B 10 181 13 HOH HOH . H 4 HOH B 11 182 16 HOH HOH . H 4 HOH B 12 183 18 HOH HOH . H 4 HOH B 13 184 22 HOH HOH . H 4 HOH B 14 185 23 HOH HOH . H 4 HOH B 15 186 26 HOH HOH . H 4 HOH B 16 187 27 HOH HOH . H 4 HOH B 17 188 28 HOH HOH . H 4 HOH B 18 189 31 HOH HOH . H 4 HOH B 19 190 37 HOH HOH . H 4 HOH B 20 191 41 HOH HOH . H 4 HOH B 21 192 43 HOH HOH . H 4 HOH B 22 193 44 HOH HOH . H 4 HOH B 23 194 45 HOH HOH . H 4 HOH B 24 195 46 HOH HOH . H 4 HOH B 25 196 47 HOH HOH . H 4 HOH B 26 197 48 HOH HOH . H 4 HOH B 27 198 49 HOH HOH . H 4 HOH B 28 199 52 HOH HOH . H 4 HOH B 29 200 54 HOH HOH . H 4 HOH B 30 201 55 HOH HOH . H 4 HOH B 31 202 57 HOH HOH . H 4 HOH B 32 203 62 HOH HOH . H 4 HOH B 33 204 64 HOH HOH . H 4 HOH B 34 205 66 HOH HOH . H 4 HOH B 35 206 69 HOH HOH . H 4 HOH B 36 207 70 HOH HOH . H 4 HOH B 37 208 74 HOH HOH . H 4 HOH B 38 209 75 HOH HOH . H 4 HOH B 39 210 79 HOH HOH . H 4 HOH B 40 211 80 HOH HOH . H 4 HOH B 41 212 81 HOH HOH . H 4 HOH B 42 213 82 HOH HOH . H 4 HOH B 43 214 85 HOH HOH . H 4 HOH B 44 215 86 HOH HOH . H 4 HOH B 45 216 89 HOH HOH . H 4 HOH B 46 217 90 HOH HOH . H 4 HOH B 47 218 91 HOH HOH . H 4 HOH B 48 219 93 HOH HOH . H 4 HOH B 49 220 97 HOH HOH . H 4 HOH B 50 221 98 HOH HOH . H 4 HOH B 51 222 100 HOH HOH . H 4 HOH B 52 223 101 HOH HOH . H 4 HOH B 53 224 103 HOH HOH . H 4 HOH B 54 225 107 HOH HOH . H 4 HOH B 55 226 108 HOH HOH . H 4 HOH B 56 227 109 HOH HOH . H 4 HOH B 57 228 110 HOH HOH . H 4 HOH B 58 229 111 HOH HOH . H 4 HOH B 59 230 112 HOH HOH . H 4 HOH B 60 231 114 HOH HOH . H 4 HOH B 61 232 116 HOH HOH . H 4 HOH B 62 233 120 HOH HOH . H 4 HOH B 63 234 121 HOH HOH . H 4 HOH B 64 235 122 HOH HOH . H 4 HOH B 65 236 123 HOH HOH . H 4 HOH B 66 237 124 HOH HOH . H 4 HOH B 67 238 126 HOH HOH . H 4 HOH B 68 239 128 HOH HOH . H 4 HOH B 69 240 130 HOH HOH . H 4 HOH B 70 241 131 HOH HOH . H 4 HOH B 71 242 132 HOH HOH . H 4 HOH B 72 243 135 HOH HOH . H 4 HOH B 73 244 136 HOH HOH . H 4 HOH B 74 245 142 HOH HOH . H 4 HOH B 75 246 143 HOH HOH . H 4 HOH B 76 247 146 HOH HOH . I 4 HOH A 1 171 1 HOH HOH . I 4 HOH A 2 172 3 HOH HOH . I 4 HOH A 3 173 8 HOH HOH . I 4 HOH A 4 174 14 HOH HOH . I 4 HOH A 5 175 15 HOH HOH . I 4 HOH A 6 176 17 HOH HOH . I 4 HOH A 7 177 19 HOH HOH . I 4 HOH A 8 178 20 HOH HOH . I 4 HOH A 9 179 21 HOH HOH . I 4 HOH A 10 180 24 HOH HOH . I 4 HOH A 11 181 25 HOH HOH . I 4 HOH A 12 182 29 HOH HOH . I 4 HOH A 13 183 30 HOH HOH . I 4 HOH A 14 184 32 HOH HOH . I 4 HOH A 15 185 33 HOH HOH . I 4 HOH A 16 186 34 HOH HOH . I 4 HOH A 17 187 35 HOH HOH . I 4 HOH A 18 188 36 HOH HOH . I 4 HOH A 19 189 38 HOH HOH . I 4 HOH A 20 190 39 HOH HOH . I 4 HOH A 21 191 40 HOH HOH . I 4 HOH A 22 192 42 HOH HOH . I 4 HOH A 23 193 50 HOH HOH . I 4 HOH A 24 194 51 HOH HOH . I 4 HOH A 25 195 53 HOH HOH . I 4 HOH A 26 196 56 HOH HOH . I 4 HOH A 27 197 58 HOH HOH . I 4 HOH A 28 198 59 HOH HOH . I 4 HOH A 29 199 60 HOH HOH . I 4 HOH A 30 200 61 HOH HOH . I 4 HOH A 31 201 63 HOH HOH . I 4 HOH A 32 202 65 HOH HOH . I 4 HOH A 33 203 67 HOH HOH . I 4 HOH A 34 204 68 HOH HOH . I 4 HOH A 35 205 71 HOH HOH . I 4 HOH A 36 206 72 HOH HOH . I 4 HOH A 37 207 73 HOH HOH . I 4 HOH A 38 208 76 HOH HOH . I 4 HOH A 39 209 77 HOH HOH . I 4 HOH A 40 210 78 HOH HOH . I 4 HOH A 41 211 83 HOH HOH . I 4 HOH A 42 212 84 HOH HOH . I 4 HOH A 43 213 87 HOH HOH . I 4 HOH A 44 214 88 HOH HOH . I 4 HOH A 45 215 92 HOH HOH . I 4 HOH A 46 216 94 HOH HOH . I 4 HOH A 47 217 95 HOH HOH . I 4 HOH A 48 218 96 HOH HOH . I 4 HOH A 49 219 99 HOH HOH . I 4 HOH A 50 220 102 HOH HOH . I 4 HOH A 51 221 104 HOH HOH . I 4 HOH A 52 222 105 HOH HOH . I 4 HOH A 53 223 106 HOH HOH . I 4 HOH A 54 224 113 HOH HOH . I 4 HOH A 55 225 115 HOH HOH . I 4 HOH A 56 226 117 HOH HOH . I 4 HOH A 57 227 118 HOH HOH . I 4 HOH A 58 228 119 HOH HOH . I 4 HOH A 59 229 125 HOH HOH . I 4 HOH A 60 230 127 HOH HOH . I 4 HOH A 61 231 129 HOH HOH . I 4 HOH A 62 232 133 HOH HOH . I 4 HOH A 63 233 134 HOH HOH . I 4 HOH A 64 234 137 HOH HOH . I 4 HOH A 65 235 138 HOH HOH . I 4 HOH A 66 236 139 HOH HOH . I 4 HOH A 67 237 140 HOH HOH . I 4 HOH A 68 238 141 HOH HOH . I 4 HOH A 69 239 144 HOH HOH . I 4 HOH A 70 240 145 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 MES . . . D 3 6.555 -22.274 -33.688 1 98.73 ? O1 MES 170 B 1 HETATM 2 C C2 MES . . . D 3 6.891 -23.608 -34.071 1 104.44 ? C2 MES 170 B 1 HETATM 3 C C3 MES . . . D 3 8.402 -23.824 -34.108 1 111.3 ? C3 MES 170 B 1 HETATM 4 N N4 MES . . . D 3 8.917 -23.294 -32.851 1 109.71 ? N4 MES 170 B 1 HETATM 5 C C5 MES . . . D 3 8.586 -21.936 -32.46 1 102.54 ? C5 MES 170 B 1 HETATM 6 C C6 MES . . . D 3 7.687 -21.418 -33.572 1 100.88 ? C6 MES 170 B 1 HETATM 7 C C7 MES . . . D 3 9.772 -24.094 -31.982 1 120.68 ? C7 MES 170 B 1 HETATM 8 C C8 MES . . . D 3 9.399 -25.547 -32.251 1 133.28 ? C8 MES 170 B 1 HETATM 9 S S MES . . . D 3 9.766 -26.472 -30.918 1 183.93 ? S MES 170 B 1 HETATM 10 O O1S MES . . . D 3 11.163 -26.952 -31.017 1 185.98 ? O1S MES 170 B 1 HETATM 11 O O2S MES . . . D 3 9.613 -25.65 -29.696 1 184.17 ? O2S MES 170 B 1 HETATM 12 O O3S MES . . . D 3 8.854 -27.637 -30.857 1 176.59 ? O3S MES 170 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 12 #