data_3PYP # _model_server_result.job_id igouR1FF1zOpImlqokEifQ _model_server_result.datetime_utc '2024-10-20 18:57:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3pyp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":126}' # _entry.id 3PYP # _exptl.entry_id 3PYP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 164.158 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "4'-HYDROXYCINNAMIC ACID" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3PYP _cell.length_a 66.224 _cell.length_b 66.224 _cell.length_c 40.561 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PYP _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 69 A CYS 69 1_555 B C1 HC4 . A HC4 126 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.84 ? covale ? covale2 A SG CYS 69 A CYS 69 1_555 B C1 HC4 . A HC4 126 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.793 ? # _chem_comp.formula 'C9 H8 O3' _chem_comp.formula_weight 164.158 _chem_comp.id HC4 _chem_comp.mon_nstd_flag . _chem_comp.name "4'-HYDROXYCINNAMIC ACID" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'PARA-COUMARIC ACID' # _atom_sites.entry_id 3PYP _atom_sites.fract_transf_matrix[1][1] 0.0151 _atom_sites.fract_transf_matrix[1][2] 0.008718 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017436 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024654 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HC4 A 1 126 69 HC4 HC4 . C 3 HOH A 1 1001 1001 HOH HOH . C 3 HOH A 2 1002 1002 HOH HOH . C 3 HOH A 3 1003 1003 HOH HOH . C 3 HOH A 4 1004 1004 HOH HOH . C 3 HOH A 5 1005 1005 HOH HOH . C 3 HOH A 6 1006 1006 HOH HOH . C 3 HOH A 7 1007 1007 HOH HOH . C 3 HOH A 8 1008 1008 HOH HOH . C 3 HOH A 9 1009 1009 HOH HOH . C 3 HOH A 10 1010 1010 HOH HOH . C 3 HOH A 11 1011 1011 HOH HOH . C 3 HOH A 12 1012 1012 HOH HOH . C 3 HOH A 13 1013 1013 HOH HOH . C 3 HOH A 14 1014 1014 HOH HOH . C 3 HOH A 15 1015 1015 HOH HOH . C 3 HOH A 16 1016 1016 HOH HOH . C 3 HOH A 17 1017 1017 HOH HOH . C 3 HOH A 18 1018 1018 HOH HOH . C 3 HOH A 19 1019 1019 HOH HOH . C 3 HOH A 20 1020 1020 HOH HOH . C 3 HOH A 21 1021 1021 HOH HOH . C 3 HOH A 22 1022 1022 HOH HOH . C 3 HOH A 23 1023 1023 HOH HOH . C 3 HOH A 24 1024 1024 HOH HOH . C 3 HOH A 25 1025 1025 HOH HOH . C 3 HOH A 26 1026 1026 HOH HOH . C 3 HOH A 27 1027 1027 HOH HOH . C 3 HOH A 28 1028 1028 HOH HOH . C 3 HOH A 29 1029 1029 HOH HOH . C 3 HOH A 30 1030 1030 HOH HOH . C 3 HOH A 31 1031 1031 HOH HOH . C 3 HOH A 32 1032 1032 HOH HOH . C 3 HOH A 33 1033 1033 HOH HOH . C 3 HOH A 34 1034 1034 HOH HOH . C 3 HOH A 35 1035 1035 HOH HOH . C 3 HOH A 36 1036 1036 HOH HOH . C 3 HOH A 37 1038 1038 HOH HOH . C 3 HOH A 38 1039 1039 HOH HOH . C 3 HOH A 39 1040 1040 HOH HOH . C 3 HOH A 40 1041 1041 HOH HOH . C 3 HOH A 41 1042 1042 HOH HOH . C 3 HOH A 42 1043 1043 HOH HOH . C 3 HOH A 43 1044 1044 HOH HOH . C 3 HOH A 44 1045 1045 HOH HOH . C 3 HOH A 45 1046 1046 HOH HOH . C 3 HOH A 46 1048 1048 HOH HOH . C 3 HOH A 47 1049 1049 HOH HOH . C 3 HOH A 48 1050 1050 HOH HOH . C 3 HOH A 49 1051 1051 HOH HOH . C 3 HOH A 50 1054 1054 HOH HOH . C 3 HOH A 51 1055 1055 HOH HOH . C 3 HOH A 52 1056 1056 HOH HOH . C 3 HOH A 53 1057 1057 HOH HOH . C 3 HOH A 54 1059 1059 HOH HOH . C 3 HOH A 55 1060 1060 HOH HOH . C 3 HOH A 56 1061 1061 HOH HOH . C 3 HOH A 57 1062 1062 HOH HOH . C 3 HOH A 58 1063 1063 HOH HOH . C 3 HOH A 59 1064 1064 HOH HOH . C 3 HOH A 60 1065 1065 HOH HOH . C 3 HOH A 61 1066 1066 HOH HOH . C 3 HOH A 62 1067 1067 HOH HOH . C 3 HOH A 63 1068 1068 HOH HOH . C 3 HOH A 64 1069 1069 HOH HOH . C 3 HOH A 65 2002 2002 HOH HOH . C 3 HOH A 66 2003 2003 HOH HOH . C 3 HOH A 67 2004 2004 HOH HOH . C 3 HOH A 68 2005 2005 HOH HOH . C 3 HOH A 69 2006 2006 HOH HOH . C 3 HOH A 70 2007 2007 HOH HOH . C 3 HOH A 71 2008 2008 HOH HOH . C 3 HOH A 72 2009 2009 HOH HOH . C 3 HOH A 73 2010 2010 HOH HOH . C 3 HOH A 74 2011 2011 HOH HOH . C 3 HOH A 75 2012 2012 HOH HOH . C 3 HOH A 76 2013 2013 HOH HOH . C 3 HOH A 77 2014 2014 HOH HOH . C 3 HOH A 78 2015 2015 HOH HOH . C 3 HOH A 79 2016 2016 HOH HOH . C 3 HOH A 80 2017 2017 HOH HOH . C 3 HOH A 81 2018 2018 HOH HOH . C 3 HOH A 82 2019 2019 HOH HOH . C 3 HOH A 83 2020 2020 HOH HOH . C 3 HOH A 84 2021 2021 HOH HOH . C 3 HOH A 85 2022 2022 HOH HOH . C 3 HOH A 86 2023 2023 HOH HOH . C 3 HOH A 87 2024 2024 HOH HOH . C 3 HOH A 88 2025 2025 HOH HOH . C 3 HOH A 89 2026 2026 HOH HOH . C 3 HOH A 90 2027 2027 HOH HOH . C 3 HOH A 91 2028 2028 HOH HOH . C 3 HOH A 92 2029 2029 HOH HOH . C 3 HOH A 93 2030 2030 HOH HOH . C 3 HOH A 94 2032 2032 HOH HOH . C 3 HOH A 95 2033 2033 HOH HOH . C 3 HOH A 96 2034 2034 HOH HOH . C 3 HOH A 97 2035 2035 HOH HOH . C 3 HOH A 98 2036 2036 HOH HOH . C 3 HOH A 99 2037 2037 HOH HOH . C 3 HOH A 100 2041 2041 HOH HOH . C 3 HOH A 101 2043 2043 HOH HOH . C 3 HOH A 102 2045 2045 HOH HOH . C 3 HOH A 103 2046 2046 HOH HOH . C 3 HOH A 104 2047 2047 HOH HOH . C 3 HOH A 105 2049 2049 HOH HOH . C 3 HOH A 106 3001 3001 HOH HOH . C 3 HOH A 107 3002 3002 HOH HOH . C 3 HOH A 108 3003 3003 HOH HOH . C 3 HOH A 109 3004 3004 HOH HOH . C 3 HOH A 110 3005 3005 HOH HOH . C 3 HOH A 111 3006 3006 HOH HOH . C 3 HOH A 112 3007 3007 HOH HOH . C 3 HOH A 113 3008 3008 HOH HOH . C 3 HOH A 114 3009 3009 HOH HOH . C 3 HOH A 115 3011 3011 HOH HOH . C 3 HOH A 116 3012 3012 HOH HOH . C 3 HOH A 117 3014 3014 HOH HOH . C 3 HOH A 118 3015 3015 HOH HOH . C 3 HOH A 119 3016 3016 HOH HOH . C 3 HOH A 120 3017 3017 HOH HOH . C 3 HOH A 121 3018 3018 HOH HOH . C 3 HOH A 122 3019 3019 HOH HOH . C 3 HOH A 123 3020 3020 HOH HOH . C 3 HOH A 124 3021 3021 HOH HOH . C 3 HOH A 125 3022 3022 HOH HOH . C 3 HOH A 126 3026 3026 HOH HOH . C 3 HOH A 127 3028 3028 HOH HOH . C 3 HOH A 128 3029 3029 HOH HOH . C 3 HOH A 129 3031 3031 HOH HOH . C 3 HOH A 130 3032 3032 HOH HOH . C 3 HOH A 131 3033 3033 HOH HOH . C 3 HOH A 132 3034 3034 HOH HOH . C 3 HOH A 133 3035 3035 HOH HOH . C 3 HOH A 134 3039 3039 HOH HOH . C 3 HOH A 135 3040 3040 HOH HOH . C 3 HOH A 136 3041 3041 HOH HOH . C 3 HOH A 137 3044 3044 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 HC4 . A . B 2 11.923 2.834 -19.566 0.76 8.78 ? C1 HC4 126 A 1 HETATM 2 C C1 HC4 . B . B 2 11.951 2.809 -18.661 0.23 8.17 ? C1 HC4 126 A 1 HETATM 3 O O1 HC4 . A . B 2 12.149 3.047 -20.814 0.76 9.88 ? O1 HC4 126 A 1 HETATM 4 O O1 HC4 . B . B 2 12.349 2.518 -17.478 0.23 7.17 ? O1 HC4 126 A 1 HETATM 5 C C2 HC4 . A . B 2 12.741 1.923 -18.866 0.76 8.58 ? C2 HC4 126 A 1 HETATM 6 C C2 HC4 . B . B 2 12.73 2.15 -19.705 0.23 9.21 ? C2 HC4 126 A 1 HETATM 7 C C3 HC4 . A . B 2 13.583 1.105 -19.435 0.76 9.17 ? C3 HC4 126 A 1 HETATM 8 C C3 HC4 . B . B 2 13.275 0.977 -19.855 0.23 8.89 ? C3 HC4 126 A 1 HETATM 9 C C1' HC4 . A . B 2 14.664 0.441 -18.803 0.76 7.71 ? C1' HC4 126 A 1 HETATM 10 C C1' HC4 . B . B 2 14.426 0.435 -19.215 0.23 7.55 ? C1' HC4 126 A 1 HETATM 11 C C2' HC4 . A . B 2 15.499 -0.411 -19.568 0.76 7.54 ? C2' HC4 126 A 1 HETATM 12 C C2' HC4 . B . B 2 15.341 -0.381 -19.894 0.23 6.8 ? C2' HC4 126 A 1 HETATM 13 C C3' HC4 . A . B 2 16.59 -1.009 -19.023 0.76 6.73 ? C3' HC4 126 A 1 HETATM 14 C C3' HC4 . B . B 2 16.441 -0.902 -19.267 0.23 6.55 ? C3' HC4 126 A 1 HETATM 15 C C4' HC4 . A . B 2 16.89 -0.831 -17.671 0.76 5.81 ? C4' HC4 126 A 1 HETATM 16 C C4' HC4 . B . B 2 16.687 -0.592 -17.931 0.23 5.92 ? C4' HC4 126 A 1 HETATM 17 C C5' HC4 . A . B 2 16.051 -0.029 -16.871 0.76 6.8 ? C5' HC4 126 A 1 HETATM 18 C C5' HC4 . B . B 2 15.787 0.256 -17.272 0.23 6.36 ? C5' HC4 126 A 1 HETATM 19 C C6' HC4 . A . B 2 14.964 0.575 -17.462 0.76 7.29 ? C6' HC4 126 A 1 HETATM 20 C C6' HC4 . B . B 2 14.676 0.739 -17.89 0.23 6.33 ? C6' HC4 126 A 1 HETATM 21 O O4' HC4 . A . B 2 17.913 -1.472 -17.077 0.76 5.96 ? O4' HC4 126 A 1 HETATM 22 O O4' HC4 . B . B 2 17.718 -1.094 -17.29 0.23 7.06 ? O4' HC4 126 A 1 HETATM 23 H H2 HC4 . A . B 2 12.675 1.903 -17.918 0.76 10.29 ? H2 HC4 126 A 1 HETATM 24 H H2 HC4 . B . B 2 12.874 2.713 -20.456 0.23 11.05 ? H2 HC4 126 A 1 HETATM 25 H H3 HC4 . A . B 2 13.46 0.939 -20.362 0.76 11.01 ? H3 HC4 126 A 1 HETATM 26 H H3 HC4 . B . B 2 12.845 0.402 -20.478 0.23 10.67 ? H3 HC4 126 A 1 HETATM 27 H H2' HC4 . A . B 2 15.292 -0.567 -20.482 0.76 9.05 ? H2' HC4 126 A 1 HETATM 28 H H2' HC4 . B . B 2 15.194 -0.578 -20.812 0.23 8.15 ? H2' HC4 126 A 1 HETATM 29 H H3' HC4 . A . B 2 17.152 -1.551 -19.564 0.76 8.07 ? H3' HC4 126 A 1 HETATM 30 H H3' HC4 . B . B 2 17.035 -1.472 -19.742 0.23 7.87 ? H3' HC4 126 A 1 HETATM 31 H H5' HC4 . A . B 2 16.232 0.093 -15.946 0.76 8.16 ? H5' HC4 126 A 1 HETATM 32 H H5' HC4 . B . B 2 15.958 0.499 -16.37 0.23 7.63 ? H5' HC4 126 A 1 HETATM 33 H H6' HC4 . A . B 2 14.393 1.109 -16.921 0.76 8.75 ? H6' HC4 126 A 1 HETATM 34 H H6' HC4 . B . B 2 14.068 1.288 -17.408 0.23 7.59 ? H6' HC4 126 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 384 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 34 #