data_3PYY # _model_server_result.job_id VBg3Z2vQOh3yzC0MpceFjw _model_server_result.datetime_utc '2024-10-10 19:22:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3pyy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":170}' # _entry.id 3PYY # _exptl.entry_id 3PYY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 414.488 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NONAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3PYY _cell.length_a 74.391 _cell.length_b 95.432 _cell.length_c 115.502 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PYY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,L 1 1 B,G,H,I,J,K,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C18 H38 O10' _chem_comp.formula_weight 414.488 _chem_comp.id 2PE _chem_comp.mon_nstd_flag . _chem_comp.name 'NONAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 2PE sing 1 n n O1 HO1 2PE sing 2 n n C2 C3 2PE sing 3 n n C2 H21 2PE sing 4 n n C2 H22 2PE sing 5 n n C3 O4 2PE sing 6 n n C3 H31 2PE sing 7 n n C3 H32 2PE sing 8 n n O4 C5 2PE sing 9 n n C5 C6 2PE sing 10 n n C5 H51 2PE sing 11 n n C5 H52 2PE sing 12 n n C6 O7 2PE sing 13 n n C6 H61 2PE sing 14 n n C6 H62 2PE sing 15 n n O7 C8 2PE sing 16 n n C8 C9 2PE sing 17 n n C8 H81 2PE sing 18 n n C8 H82 2PE sing 19 n n C9 O10 2PE sing 20 n n C9 H91 2PE sing 21 n n C9 H92 2PE sing 22 n n O10 C11 2PE sing 23 n n C11 C12 2PE sing 24 n n C11 H111 2PE sing 25 n n C11 H112 2PE sing 26 n n C12 O13 2PE sing 27 n n C12 H121 2PE sing 28 n n C12 H122 2PE sing 29 n n O13 C14 2PE sing 30 n n C14 C15 2PE sing 31 n n C14 H141 2PE sing 32 n n C14 H142 2PE sing 33 n n C15 O16 2PE sing 34 n n C15 H151 2PE sing 35 n n C15 H152 2PE sing 36 n n O16 C17 2PE sing 37 n n C17 C18 2PE sing 38 n n C17 H171 2PE sing 39 n n C17 H172 2PE sing 40 n n C18 O19 2PE sing 41 n n C18 H181 2PE sing 42 n n C18 H182 2PE sing 43 n n O19 C20 2PE sing 44 n n C20 C21 2PE sing 45 n n C20 H201 2PE sing 46 n n C20 H202 2PE sing 47 n n C21 O22 2PE sing 48 n n C21 H211 2PE sing 49 n n C21 H212 2PE sing 50 n n O22 C23 2PE sing 51 n n C23 C24 2PE sing 52 n n C23 H231 2PE sing 53 n n C23 H232 2PE sing 54 n n C24 O25 2PE sing 55 n n C24 H241 2PE sing 56 n n C24 H242 2PE sing 57 n n O25 C26 2PE sing 58 n n C26 C27 2PE sing 59 n n C26 H261 2PE sing 60 n n C26 H262 2PE sing 61 n n C27 O28 2PE sing 62 n n C27 H271 2PE sing 63 n n C27 H272 2PE sing 64 n n O28 HO2 2PE sing 65 n n # _atom_sites.entry_id 3PYY _atom_sites.fract_transf_matrix[1][1] 0.013442 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010479 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008658 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 4 4 SO4 SO4 . D 2 SO4 A 1 5 5 SO4 SO4 . E 3 STI A 1 3 3 STI STI . F 4 3YY A 1 538 538 3YY 3YY . G 2 SO4 B 1 3 3 SO4 SO4 . H 3 STI B 1 4 4 STI STI . I 5 2PE B 1 170 170 2PE 2PE . J 6 GOL B 1 60 60 GOL GOL . K 4 3YY B 1 532 530 3YY 3YY . L 7 HOH A 1 9 9 HOH HOH . L 7 HOH A 2 10 10 HOH HOH . L 7 HOH A 3 11 11 HOH HOH . L 7 HOH A 4 12 12 HOH HOH . L 7 HOH A 5 14 14 HOH HOH . L 7 HOH A 6 16 16 HOH HOH . L 7 HOH A 7 17 17 HOH HOH . L 7 HOH A 8 21 21 HOH HOH . L 7 HOH A 9 22 22 HOH HOH . L 7 HOH A 10 23 23 HOH HOH . L 7 HOH A 11 25 25 HOH HOH . L 7 HOH A 12 28 28 HOH HOH . L 7 HOH A 13 30 30 HOH HOH . L 7 HOH A 14 32 32 HOH HOH . L 7 HOH A 15 33 33 HOH HOH . L 7 HOH A 16 35 35 HOH HOH . L 7 HOH A 17 38 38 HOH HOH . L 7 HOH A 18 40 40 HOH HOH . L 7 HOH A 19 43 43 HOH HOH . L 7 HOH A 20 44 44 HOH HOH . L 7 HOH A 21 46 46 HOH HOH . L 7 HOH A 22 49 49 HOH HOH . L 7 HOH A 23 51 51 HOH HOH . L 7 HOH A 24 54 54 HOH HOH . L 7 HOH A 25 56 56 HOH HOH . L 7 HOH A 26 57 57 HOH HOH . L 7 HOH A 27 60 60 HOH HOH . L 7 HOH A 28 61 61 HOH HOH . L 7 HOH A 29 63 63 HOH HOH . L 7 HOH A 30 64 64 HOH HOH . L 7 HOH A 31 65 65 HOH HOH . L 7 HOH A 32 66 66 HOH HOH . L 7 HOH A 33 70 70 HOH HOH . L 7 HOH A 34 72 72 HOH HOH . L 7 HOH A 35 73 73 HOH HOH . L 7 HOH A 36 74 74 HOH HOH . L 7 HOH A 37 75 75 HOH HOH . L 7 HOH A 38 76 76 HOH HOH . L 7 HOH A 39 81 81 HOH HOH . L 7 HOH A 40 85 85 HOH HOH . L 7 HOH A 41 86 86 HOH HOH . L 7 HOH A 42 88 88 HOH HOH . L 7 HOH A 43 90 90 HOH HOH . L 7 HOH A 44 91 91 HOH HOH . L 7 HOH A 45 92 92 HOH HOH . L 7 HOH A 46 93 93 HOH HOH . L 7 HOH A 47 96 96 HOH HOH . L 7 HOH A 48 98 98 HOH HOH . L 7 HOH A 49 99 99 HOH HOH . L 7 HOH A 50 103 103 HOH HOH . L 7 HOH A 51 105 105 HOH HOH . L 7 HOH A 52 106 106 HOH HOH . L 7 HOH A 53 107 107 HOH HOH . L 7 HOH A 54 108 108 HOH HOH . L 7 HOH A 55 110 110 HOH HOH . L 7 HOH A 56 112 112 HOH HOH . L 7 HOH A 57 113 113 HOH HOH . L 7 HOH A 58 114 114 HOH HOH . L 7 HOH A 59 117 117 HOH HOH . L 7 HOH A 60 118 118 HOH HOH . L 7 HOH A 61 120 120 HOH HOH . L 7 HOH A 62 121 121 HOH HOH . L 7 HOH A 63 122 122 HOH HOH . L 7 HOH A 64 124 124 HOH HOH . L 7 HOH A 65 125 125 HOH HOH . L 7 HOH A 66 126 126 HOH HOH . L 7 HOH A 67 128 128 HOH HOH . L 7 HOH A 68 129 129 HOH HOH . L 7 HOH A 69 132 132 HOH HOH . L 7 HOH A 70 133 133 HOH HOH . L 7 HOH A 71 134 134 HOH HOH . L 7 HOH A 72 136 136 HOH HOH . L 7 HOH A 73 137 137 HOH HOH . L 7 HOH A 74 139 139 HOH HOH . L 7 HOH A 75 140 140 HOH HOH . L 7 HOH A 76 142 142 HOH HOH . L 7 HOH A 77 143 143 HOH HOH . L 7 HOH A 78 144 144 HOH HOH . L 7 HOH A 79 146 146 HOH HOH . L 7 HOH A 80 147 147 HOH HOH . L 7 HOH A 81 148 148 HOH HOH . L 7 HOH A 82 150 150 HOH HOH . L 7 HOH A 83 154 154 HOH HOH . L 7 HOH A 84 158 158 HOH HOH . L 7 HOH A 85 161 161 HOH HOH . L 7 HOH A 86 162 162 HOH HOH . L 7 HOH A 87 163 163 HOH HOH . L 7 HOH A 88 165 165 HOH HOH . L 7 HOH A 89 167 167 HOH HOH . L 7 HOH A 90 168 168 HOH HOH . L 7 HOH A 91 169 169 HOH HOH . L 7 HOH A 92 170 170 HOH HOH . L 7 HOH A 93 171 171 HOH HOH . L 7 HOH A 94 176 176 HOH HOH . L 7 HOH A 95 179 179 HOH HOH . L 7 HOH A 96 181 181 HOH HOH . L 7 HOH A 97 184 184 HOH HOH . L 7 HOH A 98 186 186 HOH HOH . L 7 HOH A 99 188 188 HOH HOH . L 7 HOH A 100 189 189 HOH HOH . L 7 HOH A 101 191 191 HOH HOH . L 7 HOH A 102 193 193 HOH HOH . L 7 HOH A 103 195 195 HOH HOH . L 7 HOH A 104 196 196 HOH HOH . L 7 HOH A 105 198 198 HOH HOH . L 7 HOH A 106 201 201 HOH HOH . L 7 HOH A 107 202 202 HOH HOH . L 7 HOH A 108 203 203 HOH HOH . L 7 HOH A 109 208 208 HOH HOH . L 7 HOH A 110 209 209 HOH HOH . L 7 HOH A 111 210 210 HOH HOH . L 7 HOH A 112 212 212 HOH HOH . L 7 HOH A 113 213 213 HOH HOH . L 7 HOH A 114 214 214 HOH HOH . L 7 HOH A 115 217 217 HOH HOH . L 7 HOH A 116 218 218 HOH HOH . L 7 HOH A 117 219 219 HOH HOH . L 7 HOH A 118 222 222 HOH HOH . L 7 HOH A 119 532 4 HOH HOH . M 7 HOH B 1 2 2 HOH HOH . M 7 HOH B 2 5 5 HOH HOH . M 7 HOH B 3 6 6 HOH HOH . M 7 HOH B 4 7 7 HOH HOH . M 7 HOH B 5 8 8 HOH HOH . M 7 HOH B 6 15 15 HOH HOH . M 7 HOH B 7 18 18 HOH HOH . M 7 HOH B 8 19 19 HOH HOH . M 7 HOH B 9 20 20 HOH HOH . M 7 HOH B 10 24 24 HOH HOH . M 7 HOH B 11 26 26 HOH HOH . M 7 HOH B 12 27 27 HOH HOH . M 7 HOH B 13 29 29 HOH HOH . M 7 HOH B 14 31 31 HOH HOH . M 7 HOH B 15 34 34 HOH HOH . M 7 HOH B 16 37 37 HOH HOH . M 7 HOH B 17 41 41 HOH HOH . M 7 HOH B 18 42 42 HOH HOH . M 7 HOH B 19 45 45 HOH HOH . M 7 HOH B 20 47 47 HOH HOH . M 7 HOH B 21 48 48 HOH HOH . M 7 HOH B 22 50 50 HOH HOH . M 7 HOH B 23 52 52 HOH HOH . M 7 HOH B 24 55 55 HOH HOH . M 7 HOH B 25 58 58 HOH HOH . M 7 HOH B 26 59 59 HOH HOH . M 7 HOH B 27 62 62 HOH HOH . M 7 HOH B 28 67 67 HOH HOH . M 7 HOH B 29 68 68 HOH HOH . M 7 HOH B 30 69 69 HOH HOH . M 7 HOH B 31 71 71 HOH HOH . M 7 HOH B 32 77 77 HOH HOH . M 7 HOH B 33 78 78 HOH HOH . M 7 HOH B 34 79 79 HOH HOH . M 7 HOH B 35 82 82 HOH HOH . M 7 HOH B 36 83 83 HOH HOH . M 7 HOH B 37 84 84 HOH HOH . M 7 HOH B 38 87 87 HOH HOH . M 7 HOH B 39 89 89 HOH HOH . M 7 HOH B 40 94 94 HOH HOH . M 7 HOH B 41 95 95 HOH HOH . M 7 HOH B 42 97 97 HOH HOH . M 7 HOH B 43 100 100 HOH HOH . M 7 HOH B 44 101 101 HOH HOH . M 7 HOH B 45 102 102 HOH HOH . M 7 HOH B 46 104 104 HOH HOH . M 7 HOH B 47 111 111 HOH HOH . M 7 HOH B 48 115 115 HOH HOH . M 7 HOH B 49 116 116 HOH HOH . M 7 HOH B 50 119 119 HOH HOH . M 7 HOH B 51 123 123 HOH HOH . M 7 HOH B 52 127 127 HOH HOH . M 7 HOH B 53 130 130 HOH HOH . M 7 HOH B 54 131 131 HOH HOH . M 7 HOH B 55 135 135 HOH HOH . M 7 HOH B 56 138 138 HOH HOH . M 7 HOH B 57 141 141 HOH HOH . M 7 HOH B 58 145 145 HOH HOH . M 7 HOH B 59 149 149 HOH HOH . M 7 HOH B 60 151 151 HOH HOH . M 7 HOH B 61 152 152 HOH HOH . M 7 HOH B 62 153 153 HOH HOH . M 7 HOH B 63 155 155 HOH HOH . M 7 HOH B 64 156 156 HOH HOH . M 7 HOH B 65 157 157 HOH HOH . M 7 HOH B 66 159 159 HOH HOH . M 7 HOH B 67 160 160 HOH HOH . M 7 HOH B 68 164 164 HOH HOH . M 7 HOH B 69 166 166 HOH HOH . M 7 HOH B 70 172 172 HOH HOH . M 7 HOH B 71 173 173 HOH HOH . M 7 HOH B 72 174 174 HOH HOH . M 7 HOH B 73 175 175 HOH HOH . M 7 HOH B 74 177 177 HOH HOH . M 7 HOH B 75 178 178 HOH HOH . M 7 HOH B 76 180 180 HOH HOH . M 7 HOH B 77 182 182 HOH HOH . M 7 HOH B 78 183 183 HOH HOH . M 7 HOH B 79 185 185 HOH HOH . M 7 HOH B 80 187 187 HOH HOH . M 7 HOH B 81 190 190 HOH HOH . M 7 HOH B 82 192 192 HOH HOH . M 7 HOH B 83 194 194 HOH HOH . M 7 HOH B 84 197 197 HOH HOH . M 7 HOH B 85 199 199 HOH HOH . M 7 HOH B 86 200 200 HOH HOH . M 7 HOH B 87 204 204 HOH HOH . M 7 HOH B 88 205 205 HOH HOH . M 7 HOH B 89 206 206 HOH HOH . M 7 HOH B 90 207 207 HOH HOH . M 7 HOH B 91 211 211 HOH HOH . M 7 HOH B 92 215 215 HOH HOH . M 7 HOH B 93 216 216 HOH HOH . M 7 HOH B 94 220 220 HOH HOH . M 7 HOH B 95 221 221 HOH HOH . M 7 HOH B 96 223 223 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 2PE . . . I 5 -5.144 23.574 6.889 1 50.32 ? O1 2PE 170 B 1 HETATM 2 C C2 2PE . . . I 5 -5.478 24.674 6.087 1 45.7 ? C2 2PE 170 B 1 HETATM 3 C C3 2PE . . . I 5 -6.996 24.734 5.896 1 49.01 ? C3 2PE 170 B 1 HETATM 4 O O4 2PE . . . I 5 -7.485 25.922 6.47 1 50.35 ? O4 2PE 170 B 1 HETATM 5 C C5 2PE . . . I 5 -8.798 26.329 6.19 1 41.25 ? C5 2PE 170 B 1 HETATM 6 C C6 2PE . . . I 5 -9.022 27.741 6.732 1 42.18 ? C6 2PE 170 B 1 HETATM 7 O O7 2PE . . . I 5 -9.173 27.73 8.13 1 44.57 ? O7 2PE 170 B 1 HETATM 8 C C8 2PE . . . I 5 -9.152 28.968 8.79 1 41.71 ? C8 2PE 170 B 1 HETATM 9 C C9 2PE . . . I 5 -9.246 28.763 10.301 1 44.2 ? C9 2PE 170 B 1 HETATM 10 O O10 2PE . . . I 5 -8.1 28.112 10.782 1 51.32 ? O10 2PE 170 B 1 HETATM 11 C C11 2PE . . . I 5 -7.464 28.632 11.921 1 53.67 ? C11 2PE 170 B 1 HETATM 12 C C12 2PE . . . I 5 -6.897 27.486 12.761 1 56.31 ? C12 2PE 170 B 1 HETATM 13 O O13 2PE . . . I 5 -5.677 27.074 12.201 1 58.34 ? O13 2PE 170 B 1 HETATM 14 C C14 2PE . . . I 5 -5.444 25.706 11.974 1 59.42 ? C14 2PE 170 B 1 HETATM 15 C C15 2PE . . . I 5 -4.114 25.539 11.225 1 62.55 ? C15 2PE 170 B 1 HETATM 16 O O16 2PE . . . I 5 -3.94 24.196 10.85 1 61.26 ? O16 2PE 170 B 1 HETATM 17 C C17 2PE . . . I 5 -4.296 23.771 9.56 1 52.61 ? C17 2PE 170 B 1 HETATM 18 C C18 2PE . . . I 5 -5.473 22.792 9.67 1 58.9 ? C18 2PE 170 B 1 HETATM 19 O O19 2PE . . . I 5 -6.656 23.491 9.988 1 59.93 ? O19 2PE 170 B 1 HETATM 20 C C20 2PE . . . I 5 -7.843 22.767 10.211 1 52.08 ? C20 2PE 170 B 1 HETATM 21 C C21 2PE . . . I 5 -8.978 23.406 9.401 1 44.67 ? C21 2PE 170 B 1 HETATM 22 O O22 2PE . . . I 5 -9.305 24.659 9.949 1 48.41 ? O22 2PE 170 B 1 HETATM 23 C C23 2PE . . . I 5 -9.441 24.792 11.34 1 45.24 ? C23 2PE 170 B 1 HETATM 24 C C24 2PE . . . I 5 -10.925 24.849 11.704 1 40.6 ? C24 2PE 170 B 1 HETATM 25 O O25 2PE . . . I 5 -11.045 24.823 13.106 1 44.43 ? O25 2PE 170 B 1 HETATM 26 C C26 2PE . . . I 5 -10.3 25.723 13.894 1 49.59 ? C26 2PE 170 B 1 HETATM 27 C C27 2PE . . . I 5 -9.638 24.99 15.077 1 52.92 ? C27 2PE 170 B 1 HETATM 28 O O28 2PE . . . I 5 -10.614 24.469 15.947 1 50.88 ? O28 2PE 170 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 28 #