data_3PYY # _model_server_result.job_id J4eArgUGOPin4w2MVjhsfw _model_server_result.datetime_utc '2024-11-23 02:36:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3pyy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":532}' # _entry.id 3PYY # _exptl.entry_id 3PYY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 336.32 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (5R)-5-[3-(4-fluorophenyl)-1-phenyl-1H-pyrazol-4-yl]imidazolidine-2,4-dione _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3PYY _cell.length_a 74.391 _cell.length_b 95.432 _cell.length_c 115.502 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PYY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,L 1 1 B,G,H,I,J,K,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 K N N # _chem_comp.formula 'C18 H13 F N4 O2' _chem_comp.formula_weight 336.32 _chem_comp.id 3YY _chem_comp.mon_nstd_flag . _chem_comp.name (5R)-5-[3-(4-fluorophenyl)-1-phenyl-1H-pyrazol-4-yl]imidazolidine-2,4-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C1 3YY doub 66 n y C1 C3 3YY sing 67 n y C1 H1 3YY sing 68 n n C2 C6 3YY sing 69 n y C2 H2 3YY sing 70 n n C3 C7 3YY doub 71 n y C3 H3 3YY sing 72 n n C11 C4 3YY doub 73 n y C4 C8 3YY sing 74 n y C4 H4 3YY sing 75 n n C11 C5 3YY sing 76 n y C5 C9 3YY doub 77 n y C5 H5 3YY sing 78 n n C6 C13 3YY doub 79 n y C6 H6 3YY sing 80 n n C13 C7 3YY sing 81 n y C7 H7 3YY sing 82 n n C8 C14 3YY doub 83 n y C8 H8 3YY sing 84 n n C9 C14 3YY sing 85 n y C9 H9 3YY sing 86 n n C10 N20 3YY sing 87 n y C10 C12 3YY doub 88 n y C10 H10 3YY sing 89 n n C15 C11 3YY sing 90 n y C18 C12 3YY sing 91 n n C12 C15 3YY sing 92 n y C13 N20 3YY sing 93 n y C14 F25 3YY sing 94 n n N19 C15 3YY doub 95 n y N21 C16 3YY sing 96 n n C16 C18 3YY sing 97 n n C16 O23 3YY doub 98 n n O24 C17 3YY doub 99 n n C17 N21 3YY sing 100 n n C17 N22 3YY sing 101 n n N22 C18 3YY sing 102 n n C18 H18 3YY sing 103 n n N20 N19 3YY sing 104 n y N21 HN21 3YY sing 105 n n N22 HN22 3YY sing 106 n n # _atom_sites.entry_id 3PYY _atom_sites.fract_transf_matrix[1][1] 0.013442 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010479 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008658 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 4 4 SO4 SO4 . D 2 SO4 A 1 5 5 SO4 SO4 . E 3 STI A 1 3 3 STI STI . F 4 3YY A 1 538 538 3YY 3YY . G 2 SO4 B 1 3 3 SO4 SO4 . H 3 STI B 1 4 4 STI STI . I 5 2PE B 1 170 170 2PE 2PE . J 6 GOL B 1 60 60 GOL GOL . K 4 3YY B 1 532 530 3YY 3YY . L 7 HOH A 1 9 9 HOH HOH . L 7 HOH A 2 10 10 HOH HOH . L 7 HOH A 3 11 11 HOH HOH . L 7 HOH A 4 12 12 HOH HOH . L 7 HOH A 5 14 14 HOH HOH . L 7 HOH A 6 16 16 HOH HOH . L 7 HOH A 7 17 17 HOH HOH . L 7 HOH A 8 21 21 HOH HOH . L 7 HOH A 9 22 22 HOH HOH . L 7 HOH A 10 23 23 HOH HOH . L 7 HOH A 11 25 25 HOH HOH . L 7 HOH A 12 28 28 HOH HOH . L 7 HOH A 13 30 30 HOH HOH . L 7 HOH A 14 32 32 HOH HOH . L 7 HOH A 15 33 33 HOH HOH . L 7 HOH A 16 35 35 HOH HOH . L 7 HOH A 17 38 38 HOH HOH . L 7 HOH A 18 40 40 HOH HOH . L 7 HOH A 19 43 43 HOH HOH . L 7 HOH A 20 44 44 HOH HOH . L 7 HOH A 21 46 46 HOH HOH . L 7 HOH A 22 49 49 HOH HOH . L 7 HOH A 23 51 51 HOH HOH . L 7 HOH A 24 54 54 HOH HOH . L 7 HOH A 25 56 56 HOH HOH . L 7 HOH A 26 57 57 HOH HOH . L 7 HOH A 27 60 60 HOH HOH . L 7 HOH A 28 61 61 HOH HOH . L 7 HOH A 29 63 63 HOH HOH . L 7 HOH A 30 64 64 HOH HOH . L 7 HOH A 31 65 65 HOH HOH . L 7 HOH A 32 66 66 HOH HOH . L 7 HOH A 33 70 70 HOH HOH . L 7 HOH A 34 72 72 HOH HOH . L 7 HOH A 35 73 73 HOH HOH . L 7 HOH A 36 74 74 HOH HOH . L 7 HOH A 37 75 75 HOH HOH . L 7 HOH A 38 76 76 HOH HOH . L 7 HOH A 39 81 81 HOH HOH . L 7 HOH A 40 85 85 HOH HOH . L 7 HOH A 41 86 86 HOH HOH . L 7 HOH A 42 88 88 HOH HOH . L 7 HOH A 43 90 90 HOH HOH . L 7 HOH A 44 91 91 HOH HOH . L 7 HOH A 45 92 92 HOH HOH . L 7 HOH A 46 93 93 HOH HOH . L 7 HOH A 47 96 96 HOH HOH . L 7 HOH A 48 98 98 HOH HOH . L 7 HOH A 49 99 99 HOH HOH . L 7 HOH A 50 103 103 HOH HOH . L 7 HOH A 51 105 105 HOH HOH . L 7 HOH A 52 106 106 HOH HOH . L 7 HOH A 53 107 107 HOH HOH . L 7 HOH A 54 108 108 HOH HOH . L 7 HOH A 55 110 110 HOH HOH . L 7 HOH A 56 112 112 HOH HOH . L 7 HOH A 57 113 113 HOH HOH . L 7 HOH A 58 114 114 HOH HOH . L 7 HOH A 59 117 117 HOH HOH . L 7 HOH A 60 118 118 HOH HOH . L 7 HOH A 61 120 120 HOH HOH . L 7 HOH A 62 121 121 HOH HOH . L 7 HOH A 63 122 122 HOH HOH . L 7 HOH A 64 124 124 HOH HOH . L 7 HOH A 65 125 125 HOH HOH . L 7 HOH A 66 126 126 HOH HOH . L 7 HOH A 67 128 128 HOH HOH . L 7 HOH A 68 129 129 HOH HOH . L 7 HOH A 69 132 132 HOH HOH . L 7 HOH A 70 133 133 HOH HOH . L 7 HOH A 71 134 134 HOH HOH . L 7 HOH A 72 136 136 HOH HOH . L 7 HOH A 73 137 137 HOH HOH . L 7 HOH A 74 139 139 HOH HOH . L 7 HOH A 75 140 140 HOH HOH . L 7 HOH A 76 142 142 HOH HOH . L 7 HOH A 77 143 143 HOH HOH . L 7 HOH A 78 144 144 HOH HOH . L 7 HOH A 79 146 146 HOH HOH . L 7 HOH A 80 147 147 HOH HOH . L 7 HOH A 81 148 148 HOH HOH . L 7 HOH A 82 150 150 HOH HOH . L 7 HOH A 83 154 154 HOH HOH . L 7 HOH A 84 158 158 HOH HOH . L 7 HOH A 85 161 161 HOH HOH . L 7 HOH A 86 162 162 HOH HOH . L 7 HOH A 87 163 163 HOH HOH . L 7 HOH A 88 165 165 HOH HOH . L 7 HOH A 89 167 167 HOH HOH . L 7 HOH A 90 168 168 HOH HOH . L 7 HOH A 91 169 169 HOH HOH . L 7 HOH A 92 170 170 HOH HOH . L 7 HOH A 93 171 171 HOH HOH . L 7 HOH A 94 176 176 HOH HOH . L 7 HOH A 95 179 179 HOH HOH . L 7 HOH A 96 181 181 HOH HOH . L 7 HOH A 97 184 184 HOH HOH . L 7 HOH A 98 186 186 HOH HOH . L 7 HOH A 99 188 188 HOH HOH . L 7 HOH A 100 189 189 HOH HOH . L 7 HOH A 101 191 191 HOH HOH . L 7 HOH A 102 193 193 HOH HOH . L 7 HOH A 103 195 195 HOH HOH . L 7 HOH A 104 196 196 HOH HOH . L 7 HOH A 105 198 198 HOH HOH . L 7 HOH A 106 201 201 HOH HOH . L 7 HOH A 107 202 202 HOH HOH . L 7 HOH A 108 203 203 HOH HOH . L 7 HOH A 109 208 208 HOH HOH . L 7 HOH A 110 209 209 HOH HOH . L 7 HOH A 111 210 210 HOH HOH . L 7 HOH A 112 212 212 HOH HOH . L 7 HOH A 113 213 213 HOH HOH . L 7 HOH A 114 214 214 HOH HOH . L 7 HOH A 115 217 217 HOH HOH . L 7 HOH A 116 218 218 HOH HOH . L 7 HOH A 117 219 219 HOH HOH . L 7 HOH A 118 222 222 HOH HOH . L 7 HOH A 119 532 4 HOH HOH . M 7 HOH B 1 2 2 HOH HOH . M 7 HOH B 2 5 5 HOH HOH . M 7 HOH B 3 6 6 HOH HOH . M 7 HOH B 4 7 7 HOH HOH . M 7 HOH B 5 8 8 HOH HOH . M 7 HOH B 6 15 15 HOH HOH . M 7 HOH B 7 18 18 HOH HOH . M 7 HOH B 8 19 19 HOH HOH . M 7 HOH B 9 20 20 HOH HOH . M 7 HOH B 10 24 24 HOH HOH . M 7 HOH B 11 26 26 HOH HOH . M 7 HOH B 12 27 27 HOH HOH . M 7 HOH B 13 29 29 HOH HOH . M 7 HOH B 14 31 31 HOH HOH . M 7 HOH B 15 34 34 HOH HOH . M 7 HOH B 16 37 37 HOH HOH . M 7 HOH B 17 41 41 HOH HOH . M 7 HOH B 18 42 42 HOH HOH . M 7 HOH B 19 45 45 HOH HOH . M 7 HOH B 20 47 47 HOH HOH . M 7 HOH B 21 48 48 HOH HOH . M 7 HOH B 22 50 50 HOH HOH . M 7 HOH B 23 52 52 HOH HOH . M 7 HOH B 24 55 55 HOH HOH . M 7 HOH B 25 58 58 HOH HOH . M 7 HOH B 26 59 59 HOH HOH . M 7 HOH B 27 62 62 HOH HOH . M 7 HOH B 28 67 67 HOH HOH . M 7 HOH B 29 68 68 HOH HOH . M 7 HOH B 30 69 69 HOH HOH . M 7 HOH B 31 71 71 HOH HOH . M 7 HOH B 32 77 77 HOH HOH . M 7 HOH B 33 78 78 HOH HOH . M 7 HOH B 34 79 79 HOH HOH . M 7 HOH B 35 82 82 HOH HOH . M 7 HOH B 36 83 83 HOH HOH . M 7 HOH B 37 84 84 HOH HOH . M 7 HOH B 38 87 87 HOH HOH . M 7 HOH B 39 89 89 HOH HOH . M 7 HOH B 40 94 94 HOH HOH . M 7 HOH B 41 95 95 HOH HOH . M 7 HOH B 42 97 97 HOH HOH . M 7 HOH B 43 100 100 HOH HOH . M 7 HOH B 44 101 101 HOH HOH . M 7 HOH B 45 102 102 HOH HOH . M 7 HOH B 46 104 104 HOH HOH . M 7 HOH B 47 111 111 HOH HOH . M 7 HOH B 48 115 115 HOH HOH . M 7 HOH B 49 116 116 HOH HOH . M 7 HOH B 50 119 119 HOH HOH . M 7 HOH B 51 123 123 HOH HOH . M 7 HOH B 52 127 127 HOH HOH . M 7 HOH B 53 130 130 HOH HOH . M 7 HOH B 54 131 131 HOH HOH . M 7 HOH B 55 135 135 HOH HOH . M 7 HOH B 56 138 138 HOH HOH . M 7 HOH B 57 141 141 HOH HOH . M 7 HOH B 58 145 145 HOH HOH . M 7 HOH B 59 149 149 HOH HOH . M 7 HOH B 60 151 151 HOH HOH . M 7 HOH B 61 152 152 HOH HOH . M 7 HOH B 62 153 153 HOH HOH . M 7 HOH B 63 155 155 HOH HOH . M 7 HOH B 64 156 156 HOH HOH . M 7 HOH B 65 157 157 HOH HOH . M 7 HOH B 66 159 159 HOH HOH . M 7 HOH B 67 160 160 HOH HOH . M 7 HOH B 68 164 164 HOH HOH . M 7 HOH B 69 166 166 HOH HOH . M 7 HOH B 70 172 172 HOH HOH . M 7 HOH B 71 173 173 HOH HOH . M 7 HOH B 72 174 174 HOH HOH . M 7 HOH B 73 175 175 HOH HOH . M 7 HOH B 74 177 177 HOH HOH . M 7 HOH B 75 178 178 HOH HOH . M 7 HOH B 76 180 180 HOH HOH . M 7 HOH B 77 182 182 HOH HOH . M 7 HOH B 78 183 183 HOH HOH . M 7 HOH B 79 185 185 HOH HOH . M 7 HOH B 80 187 187 HOH HOH . M 7 HOH B 81 190 190 HOH HOH . M 7 HOH B 82 192 192 HOH HOH . M 7 HOH B 83 194 194 HOH HOH . M 7 HOH B 84 197 197 HOH HOH . M 7 HOH B 85 199 199 HOH HOH . M 7 HOH B 86 200 200 HOH HOH . M 7 HOH B 87 204 204 HOH HOH . M 7 HOH B 88 205 205 HOH HOH . M 7 HOH B 89 206 206 HOH HOH . M 7 HOH B 90 207 207 HOH HOH . M 7 HOH B 91 211 211 HOH HOH . M 7 HOH B 92 215 215 HOH HOH . M 7 HOH B 93 216 216 HOH HOH . M 7 HOH B 94 220 220 HOH HOH . M 7 HOH B 95 221 221 HOH HOH . M 7 HOH B 96 223 223 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 3YY . . . K 4 17.222 18.511 -18.792 1 26.24 ? C1 3YY 532 B 1 HETATM 2 C C2 3YY . . . K 4 16.422 19.246 -19.639 1 38.39 ? C2 3YY 532 B 1 HETATM 3 C C3 3YY . . . K 4 17.491 18.949 -17.519 1 29.53 ? C3 3YY 532 B 1 HETATM 4 C C4 3YY . . . K 4 15.376 23.582 -13.669 1 22.86 ? C4 3YY 532 B 1 HETATM 5 C C5 3YY . . . K 4 13.475 24.726 -14.56 1 20.76 ? C5 3YY 532 B 1 HETATM 6 C C6 3YY . . . K 4 15.883 20.439 -19.21 1 31.05 ? C6 3YY 532 B 1 HETATM 7 C C7 3YY . . . K 4 16.957 20.135 -17.075 1 30.01 ? C7 3YY 532 B 1 HETATM 8 C C8 3YY . . . K 4 15.075 24.034 -12.403 1 22.72 ? C8 3YY 532 B 1 HETATM 9 C C9 3YY . . . K 4 13.172 25.178 -13.292 1 21.58 ? C9 3YY 532 B 1 HETATM 10 C C10 3YY . . . K 4 15.322 23.155 -18.225 1 23.72 ? C10 3YY 532 B 1 HETATM 11 C C11 3YY . . . K 4 14.586 23.936 -14.747 1 23.77 ? C11 3YY 532 B 1 HETATM 12 C C12 3YY . . . K 4 14.868 24.099 -17.33 1 23.61 ? C12 3YY 532 B 1 HETATM 13 C C13 3YY . . . K 4 16.162 20.857 -17.933 1 28.52 ? C13 3YY 532 B 1 HETATM 14 C C14 3YY . . . K 4 13.971 24.836 -12.225 1 21.06 ? C14 3YY 532 B 1 HETATM 15 C C15 3YY . . . K 4 14.933 23.459 -16.056 1 23.91 ? C15 3YY 532 B 1 HETATM 16 C C16 3YY . . . K 4 13.016 25.434 -18.187 1 21.09 ? C16 3YY 532 B 1 HETATM 17 C C17 3YY . . . K 4 14.292 26.183 -19.912 1 25.98 ? C17 3YY 532 B 1 HETATM 18 C C18 3YY . . . K 4 14.417 25.47 -17.655 1 22.41 ? C18 3YY 532 B 1 HETATM 19 N N19 3YY . . . K 4 15.4 22.21 -16.156 1 24.11 ? N19 3YY 532 B 1 HETATM 20 N N20 3YY . . . K 4 15.623 22.055 -17.472 1 25.98 ? N20 3YY 532 B 1 HETATM 21 N N21 3YY . . . K 4 13.045 25.829 -19.497 1 21.44 ? N21 3YY 532 B 1 HETATM 22 N N22 3YY . . . K 4 15.108 25.973 -18.837 1 21.96 ? N22 3YY 532 B 1 HETATM 23 O O23 3YY . . . K 4 12.028 25.115 -17.546 1 21.91 ? O23 3YY 532 B 1 HETATM 24 O O24 3YY . . . K 4 14.602 26.599 -21.026 1 24.48 ? O24 3YY 532 B 1 HETATM 25 F F25 3YY . . . K 4 13.673 25.29 -10.984 1 22.97 ? F25 3YY 532 B 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 25 #