data_3PZG # _model_server_result.job_id wXgxear4BIbUz7o-DPZSdA _model_server_result.datetime_utc '2025-04-02 13:59:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3pzg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":394}' # _entry.id 3PZG # _exptl.entry_id 3PZG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3PZG _cell.length_a 91.027 _cell.length_b 89.965 _cell.length_c 97.895 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PZG _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3PZG _atom_sites.fract_transf_matrix[1][1] 0.010986 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011115 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010215 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TRS A 1 1 1 TRS TRS . C 3 GOL A 1 394 1 GOL GOL . D 4 PO4 A 1 395 1 PO4 PO4 . E 5 HOH A 1 2 2 HOH HOH . E 5 HOH A 2 3 3 HOH HOH . E 5 HOH A 3 4 4 HOH HOH . E 5 HOH A 4 5 5 HOH HOH . E 5 HOH A 5 6 6 HOH HOH . E 5 HOH A 6 7 7 HOH HOH . E 5 HOH A 7 8 8 HOH HOH . E 5 HOH A 8 9 9 HOH HOH . E 5 HOH A 9 10 10 HOH HOH . E 5 HOH A 10 396 1 HOH HOH . E 5 HOH A 11 397 11 HOH HOH . E 5 HOH A 12 398 12 HOH HOH . E 5 HOH A 13 399 14 HOH HOH . E 5 HOH A 14 400 15 HOH HOH . E 5 HOH A 15 401 16 HOH HOH . E 5 HOH A 16 402 17 HOH HOH . E 5 HOH A 17 403 18 HOH HOH . E 5 HOH A 18 404 19 HOH HOH . E 5 HOH A 19 405 20 HOH HOH . E 5 HOH A 20 406 21 HOH HOH . E 5 HOH A 21 407 22 HOH HOH . E 5 HOH A 22 408 23 HOH HOH . E 5 HOH A 23 409 24 HOH HOH . E 5 HOH A 24 410 25 HOH HOH . E 5 HOH A 25 411 26 HOH HOH . E 5 HOH A 26 412 27 HOH HOH . E 5 HOH A 27 413 28 HOH HOH . E 5 HOH A 28 414 29 HOH HOH . E 5 HOH A 29 415 30 HOH HOH . E 5 HOH A 30 416 31 HOH HOH . E 5 HOH A 31 417 32 HOH HOH . E 5 HOH A 32 418 33 HOH HOH . E 5 HOH A 33 419 34 HOH HOH . E 5 HOH A 34 420 35 HOH HOH . E 5 HOH A 35 421 36 HOH HOH . E 5 HOH A 36 422 37 HOH HOH . E 5 HOH A 37 423 38 HOH HOH . E 5 HOH A 38 424 39 HOH HOH . E 5 HOH A 39 425 40 HOH HOH . E 5 HOH A 40 426 41 HOH HOH . E 5 HOH A 41 427 42 HOH HOH . E 5 HOH A 42 428 43 HOH HOH . E 5 HOH A 43 429 45 HOH HOH . E 5 HOH A 44 430 46 HOH HOH . E 5 HOH A 45 431 47 HOH HOH . E 5 HOH A 46 432 48 HOH HOH . E 5 HOH A 47 433 49 HOH HOH . E 5 HOH A 48 434 50 HOH HOH . E 5 HOH A 49 435 51 HOH HOH . E 5 HOH A 50 436 52 HOH HOH . E 5 HOH A 51 437 53 HOH HOH . E 5 HOH A 52 438 54 HOH HOH . E 5 HOH A 53 439 55 HOH HOH . E 5 HOH A 54 440 56 HOH HOH . E 5 HOH A 55 441 57 HOH HOH . E 5 HOH A 56 442 58 HOH HOH . E 5 HOH A 57 443 59 HOH HOH . E 5 HOH A 58 444 60 HOH HOH . E 5 HOH A 59 445 61 HOH HOH . E 5 HOH A 60 446 62 HOH HOH . E 5 HOH A 61 447 63 HOH HOH . E 5 HOH A 62 448 64 HOH HOH . E 5 HOH A 63 449 65 HOH HOH . E 5 HOH A 64 450 66 HOH HOH . E 5 HOH A 65 451 67 HOH HOH . E 5 HOH A 66 452 68 HOH HOH . E 5 HOH A 67 453 69 HOH HOH . E 5 HOH A 68 454 70 HOH HOH . E 5 HOH A 69 455 71 HOH HOH . E 5 HOH A 70 456 72 HOH HOH . E 5 HOH A 71 457 73 HOH HOH . E 5 HOH A 72 458 74 HOH HOH . E 5 HOH A 73 459 75 HOH HOH . E 5 HOH A 74 460 76 HOH HOH . E 5 HOH A 75 461 77 HOH HOH . E 5 HOH A 76 462 78 HOH HOH . E 5 HOH A 77 463 79 HOH HOH . E 5 HOH A 78 464 80 HOH HOH . E 5 HOH A 79 465 81 HOH HOH . E 5 HOH A 80 466 83 HOH HOH . E 5 HOH A 81 467 84 HOH HOH . E 5 HOH A 82 468 85 HOH HOH . E 5 HOH A 83 469 86 HOH HOH . E 5 HOH A 84 470 87 HOH HOH . E 5 HOH A 85 471 88 HOH HOH . E 5 HOH A 86 472 89 HOH HOH . E 5 HOH A 87 473 90 HOH HOH . E 5 HOH A 88 474 91 HOH HOH . E 5 HOH A 89 475 92 HOH HOH . E 5 HOH A 90 476 93 HOH HOH . E 5 HOH A 91 477 94 HOH HOH . E 5 HOH A 92 478 95 HOH HOH . E 5 HOH A 93 479 96 HOH HOH . E 5 HOH A 94 480 97 HOH HOH . E 5 HOH A 95 481 98 HOH HOH . E 5 HOH A 96 482 99 HOH HOH . E 5 HOH A 97 483 100 HOH HOH . E 5 HOH A 98 484 101 HOH HOH . E 5 HOH A 99 485 102 HOH HOH . E 5 HOH A 100 486 103 HOH HOH . E 5 HOH A 101 487 104 HOH HOH . E 5 HOH A 102 488 105 HOH HOH . E 5 HOH A 103 489 106 HOH HOH . E 5 HOH A 104 490 107 HOH HOH . E 5 HOH A 105 491 108 HOH HOH . E 5 HOH A 106 492 109 HOH HOH . E 5 HOH A 107 493 110 HOH HOH . E 5 HOH A 108 494 111 HOH HOH . E 5 HOH A 109 495 112 HOH HOH . E 5 HOH A 110 496 113 HOH HOH . E 5 HOH A 111 497 114 HOH HOH . E 5 HOH A 112 498 115 HOH HOH . E 5 HOH A 113 499 116 HOH HOH . E 5 HOH A 114 500 117 HOH HOH . E 5 HOH A 115 501 118 HOH HOH . E 5 HOH A 116 502 119 HOH HOH . E 5 HOH A 117 503 120 HOH HOH . E 5 HOH A 118 504 121 HOH HOH . E 5 HOH A 119 505 122 HOH HOH . E 5 HOH A 120 506 123 HOH HOH . E 5 HOH A 121 507 124 HOH HOH . E 5 HOH A 122 508 125 HOH HOH . E 5 HOH A 123 509 126 HOH HOH . E 5 HOH A 124 510 127 HOH HOH . E 5 HOH A 125 511 128 HOH HOH . E 5 HOH A 126 512 129 HOH HOH . E 5 HOH A 127 513 130 HOH HOH . E 5 HOH A 128 514 131 HOH HOH . E 5 HOH A 129 515 132 HOH HOH . E 5 HOH A 130 516 133 HOH HOH . E 5 HOH A 131 517 134 HOH HOH . E 5 HOH A 132 518 135 HOH HOH . E 5 HOH A 133 519 136 HOH HOH . E 5 HOH A 134 520 137 HOH HOH . E 5 HOH A 135 521 138 HOH HOH . E 5 HOH A 136 522 139 HOH HOH . E 5 HOH A 137 523 140 HOH HOH . E 5 HOH A 138 524 141 HOH HOH . E 5 HOH A 139 525 142 HOH HOH . E 5 HOH A 140 526 143 HOH HOH . E 5 HOH A 141 527 144 HOH HOH . E 5 HOH A 142 528 145 HOH HOH . E 5 HOH A 143 529 146 HOH HOH . E 5 HOH A 144 530 147 HOH HOH . E 5 HOH A 145 531 148 HOH HOH . E 5 HOH A 146 532 149 HOH HOH . E 5 HOH A 147 533 150 HOH HOH . E 5 HOH A 148 534 151 HOH HOH . E 5 HOH A 149 535 152 HOH HOH . E 5 HOH A 150 536 153 HOH HOH . E 5 HOH A 151 537 154 HOH HOH . E 5 HOH A 152 538 155 HOH HOH . E 5 HOH A 153 539 156 HOH HOH . E 5 HOH A 154 540 157 HOH HOH . E 5 HOH A 155 541 158 HOH HOH . E 5 HOH A 156 542 159 HOH HOH . E 5 HOH A 157 543 160 HOH HOH . E 5 HOH A 158 544 161 HOH HOH . E 5 HOH A 159 545 162 HOH HOH . E 5 HOH A 160 546 163 HOH HOH . E 5 HOH A 161 547 164 HOH HOH . E 5 HOH A 162 548 165 HOH HOH . E 5 HOH A 163 549 166 HOH HOH . E 5 HOH A 164 550 167 HOH HOH . E 5 HOH A 165 551 168 HOH HOH . E 5 HOH A 166 552 169 HOH HOH . E 5 HOH A 167 553 170 HOH HOH . E 5 HOH A 168 554 171 HOH HOH . E 5 HOH A 169 555 172 HOH HOH . E 5 HOH A 170 556 173 HOH HOH . E 5 HOH A 171 557 174 HOH HOH . E 5 HOH A 172 558 175 HOH HOH . E 5 HOH A 173 559 176 HOH HOH . E 5 HOH A 174 560 177 HOH HOH . E 5 HOH A 175 561 178 HOH HOH . E 5 HOH A 176 562 179 HOH HOH . E 5 HOH A 177 563 180 HOH HOH . E 5 HOH A 178 564 181 HOH HOH . E 5 HOH A 179 565 182 HOH HOH . E 5 HOH A 180 566 183 HOH HOH . E 5 HOH A 181 567 184 HOH HOH . E 5 HOH A 182 568 185 HOH HOH . E 5 HOH A 183 569 186 HOH HOH . E 5 HOH A 184 570 187 HOH HOH . E 5 HOH A 185 571 188 HOH HOH . E 5 HOH A 186 572 189 HOH HOH . E 5 HOH A 187 573 190 HOH HOH . E 5 HOH A 188 574 191 HOH HOH . E 5 HOH A 189 575 192 HOH HOH . E 5 HOH A 190 576 193 HOH HOH . E 5 HOH A 191 577 194 HOH HOH . E 5 HOH A 192 578 195 HOH HOH . E 5 HOH A 193 579 196 HOH HOH . E 5 HOH A 194 580 197 HOH HOH . E 5 HOH A 195 581 198 HOH HOH . E 5 HOH A 196 582 199 HOH HOH . E 5 HOH A 197 583 200 HOH HOH . E 5 HOH A 198 584 201 HOH HOH . E 5 HOH A 199 585 202 HOH HOH . E 5 HOH A 200 586 203 HOH HOH . E 5 HOH A 201 587 204 HOH HOH . E 5 HOH A 202 588 205 HOH HOH . E 5 HOH A 203 589 206 HOH HOH . E 5 HOH A 204 590 207 HOH HOH . E 5 HOH A 205 591 209 HOH HOH . E 5 HOH A 206 592 210 HOH HOH . E 5 HOH A 207 593 211 HOH HOH . E 5 HOH A 208 594 212 HOH HOH . E 5 HOH A 209 595 213 HOH HOH . E 5 HOH A 210 596 214 HOH HOH . E 5 HOH A 211 597 215 HOH HOH . E 5 HOH A 212 598 216 HOH HOH . E 5 HOH A 213 599 217 HOH HOH . E 5 HOH A 214 600 218 HOH HOH . E 5 HOH A 215 601 219 HOH HOH . E 5 HOH A 216 602 220 HOH HOH . E 5 HOH A 217 603 221 HOH HOH . E 5 HOH A 218 604 222 HOH HOH . E 5 HOH A 219 605 223 HOH HOH . E 5 HOH A 220 606 224 HOH HOH . E 5 HOH A 221 607 225 HOH HOH . E 5 HOH A 222 608 226 HOH HOH . E 5 HOH A 223 609 227 HOH HOH . E 5 HOH A 224 610 228 HOH HOH . E 5 HOH A 225 611 229 HOH HOH . E 5 HOH A 226 612 230 HOH HOH . E 5 HOH A 227 613 231 HOH HOH . E 5 HOH A 228 614 232 HOH HOH . E 5 HOH A 229 615 233 HOH HOH . E 5 HOH A 230 616 234 HOH HOH . E 5 HOH A 231 617 235 HOH HOH . E 5 HOH A 232 618 236 HOH HOH . E 5 HOH A 233 619 237 HOH HOH . E 5 HOH A 234 620 238 HOH HOH . E 5 HOH A 235 621 239 HOH HOH . E 5 HOH A 236 622 240 HOH HOH . E 5 HOH A 237 623 241 HOH HOH . E 5 HOH A 238 624 242 HOH HOH . E 5 HOH A 239 625 243 HOH HOH . E 5 HOH A 240 626 244 HOH HOH . E 5 HOH A 241 627 245 HOH HOH . E 5 HOH A 242 628 246 HOH HOH . E 5 HOH A 243 629 247 HOH HOH . E 5 HOH A 244 630 249 HOH HOH . E 5 HOH A 245 631 252 HOH HOH . E 5 HOH A 246 632 253 HOH HOH . E 5 HOH A 247 633 254 HOH HOH . E 5 HOH A 248 634 255 HOH HOH . E 5 HOH A 249 635 256 HOH HOH . E 5 HOH A 250 636 257 HOH HOH . E 5 HOH A 251 637 258 HOH HOH . E 5 HOH A 252 638 259 HOH HOH . E 5 HOH A 253 639 260 HOH HOH . E 5 HOH A 254 640 261 HOH HOH . E 5 HOH A 255 641 262 HOH HOH . E 5 HOH A 256 642 263 HOH HOH . E 5 HOH A 257 643 264 HOH HOH . E 5 HOH A 258 644 265 HOH HOH . E 5 HOH A 259 645 266 HOH HOH . E 5 HOH A 260 646 267 HOH HOH . E 5 HOH A 261 647 268 HOH HOH . E 5 HOH A 262 648 269 HOH HOH . E 5 HOH A 263 649 270 HOH HOH . E 5 HOH A 264 650 271 HOH HOH . E 5 HOH A 265 651 272 HOH HOH . E 5 HOH A 266 652 273 HOH HOH . E 5 HOH A 267 653 274 HOH HOH . E 5 HOH A 268 654 275 HOH HOH . E 5 HOH A 269 655 276 HOH HOH . E 5 HOH A 270 656 277 HOH HOH . E 5 HOH A 271 657 278 HOH HOH . E 5 HOH A 272 658 279 HOH HOH . E 5 HOH A 273 659 280 HOH HOH . E 5 HOH A 274 660 281 HOH HOH . E 5 HOH A 275 661 282 HOH HOH . E 5 HOH A 276 662 283 HOH HOH . E 5 HOH A 277 663 284 HOH HOH . E 5 HOH A 278 664 285 HOH HOH . E 5 HOH A 279 665 286 HOH HOH . E 5 HOH A 280 666 287 HOH HOH . E 5 HOH A 281 667 288 HOH HOH . E 5 HOH A 282 668 289 HOH HOH . E 5 HOH A 283 669 290 HOH HOH . E 5 HOH A 284 670 291 HOH HOH . E 5 HOH A 285 671 292 HOH HOH . E 5 HOH A 286 672 293 HOH HOH . E 5 HOH A 287 673 294 HOH HOH . E 5 HOH A 288 674 295 HOH HOH . E 5 HOH A 289 675 296 HOH HOH . E 5 HOH A 290 676 297 HOH HOH . E 5 HOH A 291 677 298 HOH HOH . E 5 HOH A 292 678 299 HOH HOH . E 5 HOH A 293 679 300 HOH HOH . E 5 HOH A 294 680 301 HOH HOH . E 5 HOH A 295 681 302 HOH HOH . E 5 HOH A 296 682 303 HOH HOH . E 5 HOH A 297 683 304 HOH HOH . E 5 HOH A 298 684 305 HOH HOH . E 5 HOH A 299 685 306 HOH HOH . E 5 HOH A 300 686 307 HOH HOH . E 5 HOH A 301 687 308 HOH HOH . E 5 HOH A 302 688 309 HOH HOH . E 5 HOH A 303 689 310 HOH HOH . E 5 HOH A 304 690 311 HOH HOH . E 5 HOH A 305 691 312 HOH HOH . E 5 HOH A 306 692 313 HOH HOH . E 5 HOH A 307 693 314 HOH HOH . E 5 HOH A 308 694 315 HOH HOH . E 5 HOH A 309 695 316 HOH HOH . E 5 HOH A 310 696 317 HOH HOH . E 5 HOH A 311 697 318 HOH HOH . E 5 HOH A 312 698 319 HOH HOH . E 5 HOH A 313 699 320 HOH HOH . E 5 HOH A 314 700 321 HOH HOH . E 5 HOH A 315 701 322 HOH HOH . E 5 HOH A 316 702 323 HOH HOH . E 5 HOH A 317 703 324 HOH HOH . E 5 HOH A 318 704 325 HOH HOH . E 5 HOH A 319 705 326 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 31.429 23.468 11.566 1 27.78 ? C1 GOL 394 A 1 HETATM 2 O O1 GOL . . . C 3 32.515 23.09 10.756 1 21.16 ? O1 GOL 394 A 1 HETATM 3 C C2 GOL . . . C 3 30.162 23.024 10.962 1 25.14 ? C2 GOL 394 A 1 HETATM 4 O O2 GOL . . . C 3 30.129 21.773 10.321 1 22.15 ? O2 GOL 394 A 1 HETATM 5 C C3 GOL . . . C 3 28.98 23.284 11.92 1 22.45 ? C3 GOL 394 A 1 HETATM 6 O O3 GOL . . . C 3 27.975 22.831 10.934 1 32.74 ? O3 GOL 394 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #