data_3PZH
#
_model_server_result.job_id            7NNGOUDYL-prli1GsV2sIA 
_model_server_result.datetime_utc      '2024-11-28 14:04:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3pzh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":340}' 
#
_entry.id    3PZH 
#
_exptl.entry_id    3PZH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          103.06 
_cell.angle_gamma         90 
_cell.entry_id            3PZH 
_cell.length_a            142.629 
_cell.length_b            59.376 
_cell.length_c            44.86 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3PZH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 F N N 
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 J N N 
? 4 K N N 
? 4 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C LEU 83 A LEU 88 1_555 A N CME 84 A CME 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale2 A C CME 84 A CME 89 1_555 A N GLY 85 A GLY 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 110 n n 
C1 C2 EDO sing 111 n n 
C1 H11 EDO sing 112 n n 
C1 H12 EDO sing 113 n n 
O1 HO1 EDO sing 114 n n 
C2 O2 EDO sing 115 n n 
C2 H21 EDO sing 116 n n 
C2 H22 EDO sing 117 n n 
O2 HO2 EDO sing 118 n n 
#
_atom_sites.entry_id                     3PZH 
_atom_sites.fract_transf_matrix[1][1]    0.007011 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001626 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016842 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.022883 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 EMO A 1 1 1 EMO DRG . 
C 3 ACT A 1 338 1 ACT ACT . 
D 3 ACT A 1 2 2 ACT ACT . 
E 4 EDO A 1 339 1 EDO EDO . 
F 4 EDO A 1 340 2 EDO EDO . 
G 4 EDO A 1 3 3 EDO EDO . 
H 4 EDO A 1 4 4 EDO EDO . 
I 4 EDO A 1 5 5 EDO EDO . 
J 4 EDO A 1 341 6 EDO EDO . 
K 4 EDO A 1 342 7 EDO EDO . 
L 4 EDO A 1 343 8 EDO EDO . 
M 5 CL A 1 344 1 CL CL . 
N 6 HOH A 1 345 1 HOH HOH . 
N 6 HOH A 2 346 2 HOH HOH . 
N 6 HOH A 3 347 3 HOH HOH . 
N 6 HOH A 4 348 4 HOH HOH . 
N 6 HOH A 5 349 5 HOH HOH . 
N 6 HOH A 6 350 6 HOH HOH . 
N 6 HOH A 7 351 7 HOH HOH . 
N 6 HOH A 8 352 8 HOH HOH . 
N 6 HOH A 9 353 9 HOH HOH . 
N 6 HOH A 10 354 10 HOH HOH . 
N 6 HOH A 11 355 11 HOH HOH . 
N 6 HOH A 12 356 12 HOH HOH . 
N 6 HOH A 13 357 13 HOH HOH . 
N 6 HOH A 14 358 14 HOH HOH . 
N 6 HOH A 15 359 15 HOH HOH . 
N 6 HOH A 16 360 16 HOH HOH . 
N 6 HOH A 17 361 17 HOH HOH . 
N 6 HOH A 18 362 18 HOH HOH . 
N 6 HOH A 19 363 19 HOH HOH . 
N 6 HOH A 20 364 20 HOH HOH . 
N 6 HOH A 21 365 21 HOH HOH . 
N 6 HOH A 22 366 22 HOH HOH . 
N 6 HOH A 23 367 23 HOH HOH . 
N 6 HOH A 24 368 24 HOH HOH . 
N 6 HOH A 25 369 25 HOH HOH . 
N 6 HOH A 26 370 26 HOH HOH . 
N 6 HOH A 27 371 27 HOH HOH . 
N 6 HOH A 28 372 28 HOH HOH . 
N 6 HOH A 29 373 29 HOH HOH . 
N 6 HOH A 30 374 30 HOH HOH . 
N 6 HOH A 31 375 31 HOH HOH . 
N 6 HOH A 32 376 32 HOH HOH . 
N 6 HOH A 33 377 34 HOH HOH . 
N 6 HOH A 34 378 35 HOH HOH . 
N 6 HOH A 35 379 36 HOH HOH . 
N 6 HOH A 36 380 37 HOH HOH . 
N 6 HOH A 37 381 38 HOH HOH . 
N 6 HOH A 38 382 39 HOH HOH . 
N 6 HOH A 39 383 40 HOH HOH . 
N 6 HOH A 40 384 41 HOH HOH . 
N 6 HOH A 41 385 42 HOH HOH . 
N 6 HOH A 42 386 43 HOH HOH . 
N 6 HOH A 43 387 44 HOH HOH . 
N 6 HOH A 44 388 45 HOH HOH . 
N 6 HOH A 45 389 46 HOH HOH . 
N 6 HOH A 46 390 47 HOH HOH . 
N 6 HOH A 47 391 48 HOH HOH . 
N 6 HOH A 48 392 49 HOH HOH . 
N 6 HOH A 49 393 50 HOH HOH . 
N 6 HOH A 50 394 51 HOH HOH . 
N 6 HOH A 51 395 52 HOH HOH . 
N 6 HOH A 52 396 53 HOH HOH . 
N 6 HOH A 53 397 54 HOH HOH . 
N 6 HOH A 54 398 55 HOH HOH . 
N 6 HOH A 55 399 56 HOH HOH . 
N 6 HOH A 56 400 58 HOH HOH . 
N 6 HOH A 57 401 59 HOH HOH . 
N 6 HOH A 58 402 60 HOH HOH . 
N 6 HOH A 59 403 61 HOH HOH . 
N 6 HOH A 60 404 63 HOH HOH . 
N 6 HOH A 61 405 64 HOH HOH . 
N 6 HOH A 62 406 65 HOH HOH . 
N 6 HOH A 63 407 66 HOH HOH . 
N 6 HOH A 64 408 67 HOH HOH . 
N 6 HOH A 65 409 68 HOH HOH . 
N 6 HOH A 66 410 69 HOH HOH . 
N 6 HOH A 67 411 70 HOH HOH . 
N 6 HOH A 68 412 71 HOH HOH . 
N 6 HOH A 69 413 72 HOH HOH . 
N 6 HOH A 70 414 73 HOH HOH . 
N 6 HOH A 71 415 74 HOH HOH . 
N 6 HOH A 72 416 75 HOH HOH . 
N 6 HOH A 73 417 76 HOH HOH . 
N 6 HOH A 74 418 77 HOH HOH . 
N 6 HOH A 75 419 78 HOH HOH . 
N 6 HOH A 76 420 79 HOH HOH . 
N 6 HOH A 77 421 80 HOH HOH . 
N 6 HOH A 78 422 81 HOH HOH . 
N 6 HOH A 79 423 82 HOH HOH . 
N 6 HOH A 80 424 83 HOH HOH . 
N 6 HOH A 81 425 84 HOH HOH . 
N 6 HOH A 82 426 85 HOH HOH . 
N 6 HOH A 83 427 86 HOH HOH . 
N 6 HOH A 84 428 87 HOH HOH . 
N 6 HOH A 85 429 88 HOH HOH . 
N 6 HOH A 86 430 89 HOH HOH . 
N 6 HOH A 87 431 91 HOH HOH . 
N 6 HOH A 88 432 92 HOH HOH . 
N 6 HOH A 89 433 93 HOH HOH . 
N 6 HOH A 90 434 94 HOH HOH . 
N 6 HOH A 91 435 95 HOH HOH . 
N 6 HOH A 92 436 96 HOH HOH . 
N 6 HOH A 93 437 97 HOH HOH . 
N 6 HOH A 94 438 98 HOH HOH . 
N 6 HOH A 95 439 99 HOH HOH . 
N 6 HOH A 96 440 100 HOH HOH . 
N 6 HOH A 97 441 101 HOH HOH . 
N 6 HOH A 98 442 102 HOH HOH . 
N 6 HOH A 99 443 103 HOH HOH . 
N 6 HOH A 100 444 104 HOH HOH . 
N 6 HOH A 101 445 105 HOH HOH . 
N 6 HOH A 102 446 106 HOH HOH . 
N 6 HOH A 103 447 107 HOH HOH . 
N 6 HOH A 104 448 108 HOH HOH . 
N 6 HOH A 105 449 109 HOH HOH . 
N 6 HOH A 106 450 110 HOH HOH . 
N 6 HOH A 107 451 111 HOH HOH . 
N 6 HOH A 108 452 112 HOH HOH . 
N 6 HOH A 109 453 113 HOH HOH . 
N 6 HOH A 110 454 114 HOH HOH . 
N 6 HOH A 111 455 115 HOH HOH . 
N 6 HOH A 112 456 116 HOH HOH . 
N 6 HOH A 113 457 117 HOH HOH . 
N 6 HOH A 114 458 118 HOH HOH . 
N 6 HOH A 115 459 119 HOH HOH . 
N 6 HOH A 116 460 120 HOH HOH . 
N 6 HOH A 117 461 121 HOH HOH . 
N 6 HOH A 118 462 122 HOH HOH . 
N 6 HOH A 119 463 123 HOH HOH . 
N 6 HOH A 120 464 124 HOH HOH . 
N 6 HOH A 121 465 125 HOH HOH . 
N 6 HOH A 122 466 126 HOH HOH . 
N 6 HOH A 123 467 127 HOH HOH . 
N 6 HOH A 124 468 128 HOH HOH . 
N 6 HOH A 125 469 129 HOH HOH . 
N 6 HOH A 126 470 130 HOH HOH . 
N 6 HOH A 127 471 131 HOH HOH . 
N 6 HOH A 128 472 132 HOH HOH . 
N 6 HOH A 129 473 133 HOH HOH . 
N 6 HOH A 130 474 134 HOH HOH . 
N 6 HOH A 131 475 135 HOH HOH . 
N 6 HOH A 132 476 136 HOH HOH . 
N 6 HOH A 133 477 137 HOH HOH . 
N 6 HOH A 134 478 138 HOH HOH . 
N 6 HOH A 135 479 139 HOH HOH . 
N 6 HOH A 136 480 140 HOH HOH . 
N 6 HOH A 137 481 141 HOH HOH . 
N 6 HOH A 138 482 142 HOH HOH . 
N 6 HOH A 139 483 143 HOH HOH . 
N 6 HOH A 140 484 144 HOH HOH . 
N 6 HOH A 141 485 145 HOH HOH . 
N 6 HOH A 142 486 146 HOH HOH . 
N 6 HOH A 143 487 147 HOH HOH . 
N 6 HOH A 144 488 148 HOH HOH . 
N 6 HOH A 145 489 149 HOH HOH . 
N 6 HOH A 146 490 150 HOH HOH . 
N 6 HOH A 147 491 151 HOH HOH . 
N 6 HOH A 148 492 152 HOH HOH . 
N 6 HOH A 149 493 153 HOH HOH . 
N 6 HOH A 150 494 154 HOH HOH . 
N 6 HOH A 151 495 155 HOH HOH . 
N 6 HOH A 152 496 156 HOH HOH . 
N 6 HOH A 153 497 157 HOH HOH . 
N 6 HOH A 154 498 158 HOH HOH . 
N 6 HOH A 155 499 159 HOH HOH . 
N 6 HOH A 156 500 160 HOH HOH . 
N 6 HOH A 157 501 161 HOH HOH . 
N 6 HOH A 158 502 162 HOH HOH . 
N 6 HOH A 159 503 163 HOH HOH . 
N 6 HOH A 160 504 164 HOH HOH . 
N 6 HOH A 161 505 165 HOH HOH . 
N 6 HOH A 162 506 166 HOH HOH . 
N 6 HOH A 163 507 167 HOH HOH . 
N 6 HOH A 164 508 168 HOH HOH . 
N 6 HOH A 165 509 169 HOH HOH . 
N 6 HOH A 166 510 170 HOH HOH . 
N 6 HOH A 167 511 171 HOH HOH . 
N 6 HOH A 168 512 173 HOH HOH . 
N 6 HOH A 169 513 174 HOH HOH . 
N 6 HOH A 170 514 175 HOH HOH . 
N 6 HOH A 171 515 176 HOH HOH . 
N 6 HOH A 172 516 177 HOH HOH . 
N 6 HOH A 173 517 179 HOH HOH . 
N 6 HOH A 174 518 180 HOH HOH . 
N 6 HOH A 175 519 181 HOH HOH . 
N 6 HOH A 176 520 182 HOH HOH . 
N 6 HOH A 177 521 183 HOH HOH . 
N 6 HOH A 178 522 184 HOH HOH . 
N 6 HOH A 179 523 185 HOH HOH . 
N 6 HOH A 180 524 186 HOH HOH . 
N 6 HOH A 181 525 187 HOH HOH . 
N 6 HOH A 182 526 188 HOH HOH . 
N 6 HOH A 183 527 189 HOH HOH . 
N 6 HOH A 184 528 190 HOH HOH . 
N 6 HOH A 185 529 191 HOH HOH . 
N 6 HOH A 186 530 192 HOH HOH . 
N 6 HOH A 187 531 193 HOH HOH . 
N 6 HOH A 188 532 194 HOH HOH . 
N 6 HOH A 189 533 195 HOH HOH . 
N 6 HOH A 190 534 196 HOH HOH . 
N 6 HOH A 191 535 197 HOH HOH . 
N 6 HOH A 192 536 198 HOH HOH . 
N 6 HOH A 193 537 199 HOH HOH . 
N 6 HOH A 194 538 200 HOH HOH . 
N 6 HOH A 195 539 201 HOH HOH . 
N 6 HOH A 196 540 202 HOH HOH . 
N 6 HOH A 197 541 203 HOH HOH . 
N 6 HOH A 198 542 204 HOH HOH . 
N 6 HOH A 199 543 205 HOH HOH . 
N 6 HOH A 200 544 206 HOH HOH . 
N 6 HOH A 201 545 207 HOH HOH . 
N 6 HOH A 202 546 208 HOH HOH . 
N 6 HOH A 203 547 209 HOH HOH . 
N 6 HOH A 204 548 210 HOH HOH . 
N 6 HOH A 205 549 211 HOH HOH . 
N 6 HOH A 206 550 212 HOH HOH . 
N 6 HOH A 207 551 213 HOH HOH . 
N 6 HOH A 208 552 214 HOH HOH . 
N 6 HOH A 209 553 215 HOH HOH . 
N 6 HOH A 210 554 216 HOH HOH . 
N 6 HOH A 211 555 217 HOH HOH . 
N 6 HOH A 212 556 218 HOH HOH . 
N 6 HOH A 213 557 219 HOH HOH . 
N 6 HOH A 214 558 220 HOH HOH . 
N 6 HOH A 215 559 221 HOH HOH . 
N 6 HOH A 216 560 222 HOH HOH . 
N 6 HOH A 217 561 223 HOH HOH . 
N 6 HOH A 218 562 224 HOH HOH . 
N 6 HOH A 219 563 225 HOH HOH . 
N 6 HOH A 220 564 226 HOH HOH . 
N 6 HOH A 221 565 227 HOH HOH . 
N 6 HOH A 222 566 228 HOH HOH . 
N 6 HOH A 223 567 229 HOH HOH . 
N 6 HOH A 224 568 230 HOH HOH . 
N 6 HOH A 225 569 231 HOH HOH . 
N 6 HOH A 226 570 232 HOH HOH . 
N 6 HOH A 227 571 233 HOH HOH . 
N 6 HOH A 228 572 234 HOH HOH . 
N 6 HOH A 229 573 235 HOH HOH . 
N 6 HOH A 230 574 236 HOH HOH . 
N 6 HOH A 231 575 237 HOH HOH . 
N 6 HOH A 232 576 238 HOH HOH . 
N 6 HOH A 233 577 239 HOH HOH . 
N 6 HOH A 234 578 240 HOH HOH . 
N 6 HOH A 235 579 241 HOH HOH . 
N 6 HOH A 236 580 242 HOH HOH . 
N 6 HOH A 237 581 243 HOH HOH . 
N 6 HOH A 238 582 244 HOH HOH . 
N 6 HOH A 239 583 245 HOH HOH . 
N 6 HOH A 240 584 246 HOH HOH . 
N 6 HOH A 241 585 247 HOH HOH . 
N 6 HOH A 242 586 248 HOH HOH . 
N 6 HOH A 243 587 251 HOH HOH . 
N 6 HOH A 244 588 252 HOH HOH . 
N 6 HOH A 245 589 253 HOH HOH . 
N 6 HOH A 246 590 254 HOH HOH . 
N 6 HOH A 247 591 255 HOH HOH . 
N 6 HOH A 248 592 257 HOH HOH . 
N 6 HOH A 249 593 258 HOH HOH . 
N 6 HOH A 250 594 259 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . F 4 11.067 -2.582 0.408 1 25.47 ? C1 EDO 340 A 1 
HETATM 2 O O1 EDO . . . F 4 10.663 -1.233 0.226 1 15.2 ? O1 EDO 340 A 1 
HETATM 3 C C2 EDO . . . F 4 11.396 -3.188 -0.943 1 23.79 ? C2 EDO 340 A 1 
HETATM 4 O O2 EDO . . . F 4 11.723 -4.558 -0.679 1 16.69 ? O2 EDO 340 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           4 
#