data_3Q0K # _model_server_result.job_id '_kY14SbLPvOsxfmCUDQ9bg' _model_server_result.datetime_utc '2024-11-05 04:04:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3q0k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":488}' # _entry.id 3Q0K # _exptl.entry_id 3Q0K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.02 _cell.angle_gamma 90 _cell.entry_id 3Q0K _cell.length_a 31.562 _cell.length_b 353.588 _cell.length_c 86.045 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3Q0K _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I,J 1 1 C,D,G,H,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O VAL 55 A VAL 71 1_555 E CA CA . A CA 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.937 ? metalc ? metalc2 A O GLY 58 A GLY 74 1_555 E CA CA . A CA 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? metalc ? metalc3 A O GLN 60 A GLN 76 1_555 E CA CA . A CA 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.663 ? metalc ? metalc4 A OE1 GLU 65 A GLU 81 1_555 E CA CA . A CA 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.65 ? metalc ? metalc5 B O VAL 55 B VAL 71 1_555 F CA CA . B CA 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? metalc ? metalc6 B O GLU 56 B GLU 72 1_555 F CA CA . B CA 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.647 ? metalc ? metalc7 B O GLY 58 B GLY 74 1_555 F CA CA . B CA 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.702 ? metalc ? metalc8 B O GLN 60 B GLN 76 1_555 F CA CA . B CA 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.668 ? metalc ? metalc9 B OE1 GLU 65 B GLU 81 1_555 F CA CA . B CA 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.156 ? metalc ? metalc10 C O VAL 55 C VAL 71 1_555 G CA CA . C CA 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.753 ? metalc ? metalc11 C O GLU 56 C GLU 72 1_555 G CA CA . C CA 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.868 ? metalc ? metalc12 C O GLY 58 C GLY 74 1_555 G CA CA . C CA 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.816 ? metalc ? metalc13 C O GLN 60 C GLN 76 1_555 G CA CA . C CA 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? metalc ? metalc14 C OE1 GLU 65 C GLU 81 1_555 G CA CA . C CA 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.773 ? metalc ? metalc15 D O VAL 55 D VAL 71 1_555 H CA CA . D CA 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.655 ? metalc ? metalc16 D O GLU 56 D GLU 72 1_555 H CA CA . D CA 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.928 ? metalc ? metalc17 D O GLY 58 D GLY 74 1_555 H CA CA . D CA 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc18 D O GLN 60 D GLN 76 1_555 H CA CA . D CA 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? metalc ? metalc19 D OE1 GLU 65 D GLU 81 1_555 H CA CA . D CA 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.179 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3Q0K _atom_sites.fract_transf_matrix[1][1] 0.031684 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000011 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.002828 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011622 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 CA A 1 488 488 CA CA . F 2 CA B 1 488 488 CA CA . G 2 CA C 1 488 488 CA CA . H 2 CA D 1 488 488 CA CA . I 3 HOH A 1 1 1 HOH HOH . I 3 HOH A 2 3 3 HOH HOH . I 3 HOH A 3 4 4 HOH HOH . I 3 HOH A 4 7 7 HOH HOH . I 3 HOH A 5 8 8 HOH HOH . I 3 HOH A 6 10 10 HOH HOH . I 3 HOH A 7 12 12 HOH HOH . I 3 HOH A 8 306 306 HOH HOH . I 3 HOH A 9 308 308 HOH HOH . I 3 HOH A 10 320 320 HOH HOH . I 3 HOH A 11 341 341 HOH HOH . I 3 HOH A 12 343 343 HOH HOH . I 3 HOH A 13 362 362 HOH HOH . I 3 HOH A 14 363 363 HOH HOH . I 3 HOH A 15 377 377 HOH HOH . I 3 HOH A 16 391 391 HOH HOH . I 3 HOH A 17 398 398 HOH HOH . I 3 HOH A 18 418 418 HOH HOH . I 3 HOH A 19 490 490 HOH HOH . I 3 HOH A 20 492 492 HOH HOH . I 3 HOH A 21 493 493 HOH HOH . I 3 HOH A 22 494 21 HOH HOH . I 3 HOH A 23 495 25 HOH HOH . I 3 HOH A 24 496 496 HOH HOH . I 3 HOH A 25 497 28 HOH HOH . I 3 HOH A 26 498 36 HOH HOH . I 3 HOH A 27 499 499 HOH HOH . I 3 HOH A 28 500 500 HOH HOH . I 3 HOH A 29 501 39 HOH HOH . I 3 HOH A 30 502 42 HOH HOH . I 3 HOH A 31 503 51 HOH HOH . I 3 HOH A 32 504 52 HOH HOH . I 3 HOH A 33 505 62 HOH HOH . I 3 HOH A 34 506 87 HOH HOH . I 3 HOH A 35 507 96 HOH HOH . I 3 HOH A 36 508 140 HOH HOH . I 3 HOH A 37 509 155 HOH HOH . I 3 HOH A 38 510 219 HOH HOH . I 3 HOH A 39 511 230 HOH HOH . I 3 HOH A 40 512 244 HOH HOH . I 3 HOH A 41 513 270 HOH HOH . I 3 HOH A 42 514 286 HOH HOH . I 3 HOH A 43 515 45 HOH HOH . I 3 HOH A 44 516 178 HOH HOH . I 3 HOH A 45 517 43 HOH HOH . I 3 HOH A 46 518 52 HOH HOH . I 3 HOH A 47 519 128 HOH HOH . I 3 HOH A 48 520 234 HOH HOH . I 3 HOH A 49 521 137 HOH HOH . I 3 HOH A 50 522 166 HOH HOH . I 3 HOH A 51 523 51 HOH HOH . I 3 HOH A 52 524 31 HOH HOH . I 3 HOH A 53 525 157 HOH HOH . I 3 HOH A 54 526 107 HOH HOH . I 3 HOH A 55 527 33 HOH HOH . I 3 HOH A 56 528 7 HOH HOH . I 3 HOH A 57 529 97 HOH HOH . I 3 HOH A 58 530 68 HOH HOH . I 3 HOH A 59 531 34 HOH HOH . I 3 HOH A 60 532 3 HOH HOH . I 3 HOH A 61 533 86 HOH HOH . J 3 HOH B 1 1 1 HOH HOH . J 3 HOH B 2 3 3 HOH HOH . J 3 HOH B 3 8 8 HOH HOH . J 3 HOH B 4 11 11 HOH HOH . J 3 HOH B 5 14 14 HOH HOH . J 3 HOH B 6 15 15 HOH HOH . J 3 HOH B 7 384 384 HOH HOH . J 3 HOH B 8 413 413 HOH HOH . J 3 HOH B 9 422 422 HOH HOH . J 3 HOH B 10 484 484 HOH HOH . J 3 HOH B 11 489 489 HOH HOH . J 3 HOH B 12 490 23 HOH HOH . J 3 HOH B 13 491 45 HOH HOH . J 3 HOH B 14 492 492 HOH HOH . J 3 HOH B 15 493 93 HOH HOH . J 3 HOH B 16 494 95 HOH HOH . J 3 HOH B 17 495 127 HOH HOH . J 3 HOH B 18 496 149 HOH HOH . J 3 HOH B 19 497 213 HOH HOH . J 3 HOH B 20 498 498 HOH HOH . J 3 HOH B 21 499 499 HOH HOH . J 3 HOH B 22 500 255 HOH HOH . J 3 HOH B 23 501 279 HOH HOH . J 3 HOH B 24 502 502 HOH HOH . J 3 HOH B 25 503 19 HOH HOH . J 3 HOH B 26 504 21 HOH HOH . J 3 HOH B 27 505 505 HOH HOH . J 3 HOH B 28 506 55 HOH HOH . J 3 HOH B 29 507 507 HOH HOH . J 3 HOH B 30 508 72 HOH HOH . J 3 HOH B 31 509 103 HOH HOH . J 3 HOH B 32 510 20 HOH HOH . J 3 HOH B 33 511 88 HOH HOH . J 3 HOH B 34 512 41 HOH HOH . J 3 HOH B 35 513 60 HOH HOH . J 3 HOH B 36 514 67 HOH HOH . J 3 HOH B 37 515 74 HOH HOH . J 3 HOH B 38 516 126 HOH HOH . J 3 HOH B 39 517 1 HOH HOH . J 3 HOH B 40 518 65 HOH HOH . J 3 HOH B 41 519 187 HOH HOH . J 3 HOH B 42 520 8 HOH HOH . J 3 HOH B 43 521 59 HOH HOH . K 3 HOH C 1 2 2 HOH HOH . K 3 HOH C 2 3 3 HOH HOH . K 3 HOH C 3 5 5 HOH HOH . K 3 HOH C 4 6 6 HOH HOH . K 3 HOH C 5 9 9 HOH HOH . K 3 HOH C 6 11 11 HOH HOH . K 3 HOH C 7 13 13 HOH HOH . K 3 HOH C 8 328 328 HOH HOH . K 3 HOH C 9 368 368 HOH HOH . K 3 HOH C 10 375 375 HOH HOH . K 3 HOH C 11 391 391 HOH HOH . K 3 HOH C 12 490 490 HOH HOH . K 3 HOH C 13 491 17 HOH HOH . K 3 HOH C 14 492 492 HOH HOH . K 3 HOH C 15 493 493 HOH HOH . K 3 HOH C 16 494 20 HOH HOH . K 3 HOH C 17 495 30 HOH HOH . K 3 HOH C 18 496 496 HOH HOH . K 3 HOH C 19 497 497 HOH HOH . K 3 HOH C 20 498 77 HOH HOH . K 3 HOH C 21 499 499 HOH HOH . K 3 HOH C 22 500 88 HOH HOH . K 3 HOH C 23 501 501 HOH HOH . K 3 HOH C 24 502 124 HOH HOH . K 3 HOH C 25 503 281 HOH HOH . K 3 HOH C 26 504 30 HOH HOH . K 3 HOH C 27 505 102 HOH HOH . K 3 HOH C 28 506 172 HOH HOH . K 3 HOH C 29 507 175 HOH HOH . K 3 HOH C 30 508 33 HOH HOH . K 3 HOH C 31 509 195 HOH HOH . K 3 HOH C 32 510 214 HOH HOH . K 3 HOH C 33 511 33 HOH HOH . K 3 HOH C 34 512 49 HOH HOH . K 3 HOH C 35 513 268 HOH HOH . K 3 HOH C 36 514 96 HOH HOH . K 3 HOH C 37 515 3 HOH HOH . K 3 HOH C 38 516 13 HOH HOH . K 3 HOH C 39 517 24 HOH HOH . K 3 HOH C 40 518 55 HOH HOH . K 3 HOH C 41 519 2 HOH HOH . K 3 HOH C 42 520 111 HOH HOH . L 3 HOH D 1 1 1 HOH HOH . L 3 HOH D 2 7 7 HOH HOH . L 3 HOH D 3 9 9 HOH HOH . L 3 HOH D 4 11 11 HOH HOH . L 3 HOH D 5 15 15 HOH HOH . L 3 HOH D 6 16 16 HOH HOH . L 3 HOH D 7 313 313 HOH HOH . L 3 HOH D 8 326 326 HOH HOH . L 3 HOH D 9 354 354 HOH HOH . L 3 HOH D 10 371 371 HOH HOH . L 3 HOH D 11 373 373 HOH HOH . L 3 HOH D 12 375 375 HOH HOH . L 3 HOH D 13 378 378 HOH HOH . L 3 HOH D 14 409 409 HOH HOH . L 3 HOH D 15 410 410 HOH HOH . L 3 HOH D 16 420 420 HOH HOH . L 3 HOH D 17 490 490 HOH HOH . L 3 HOH D 18 491 491 HOH HOH . L 3 HOH D 19 492 29 HOH HOH . L 3 HOH D 20 493 101 HOH HOH . L 3 HOH D 21 494 494 HOH HOH . L 3 HOH D 22 495 495 HOH HOH . L 3 HOH D 23 496 496 HOH HOH . L 3 HOH D 24 497 113 HOH HOH . L 3 HOH D 25 498 187 HOH HOH . L 3 HOH D 26 499 499 HOH HOH . L 3 HOH D 27 500 222 HOH HOH . L 3 HOH D 28 501 501 HOH HOH . L 3 HOH D 29 502 502 HOH HOH . L 3 HOH D 30 503 503 HOH HOH . L 3 HOH D 31 504 54 HOH HOH . L 3 HOH D 32 505 505 HOH HOH . L 3 HOH D 33 506 71 HOH HOH . L 3 HOH D 34 507 507 HOH HOH . L 3 HOH D 35 508 110 HOH HOH . L 3 HOH D 36 509 509 HOH HOH . L 3 HOH D 37 510 127 HOH HOH . L 3 HOH D 38 511 182 HOH HOH . L 3 HOH D 39 512 222 HOH HOH . L 3 HOH D 40 513 42 HOH HOH . L 3 HOH D 41 514 82 HOH HOH . L 3 HOH D 42 515 196 HOH HOH . L 3 HOH D 43 516 58 HOH HOH . L 3 HOH D 44 517 130 HOH HOH . L 3 HOH D 45 518 48 HOH HOH . L 3 HOH D 46 519 21 HOH HOH . L 3 HOH D 47 520 162 HOH HOH . L 3 HOH D 48 521 19 HOH HOH . L 3 HOH D 49 522 110 HOH HOH . L 3 HOH D 50 523 16 HOH HOH . L 3 HOH D 51 524 31 HOH HOH . L 3 HOH D 52 525 104 HOH HOH . L 3 HOH D 53 526 123 HOH HOH . L 3 HOH D 54 527 220 HOH HOH . L 3 HOH D 55 528 28 HOH HOH . L 3 HOH D 56 529 78 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 2 _atom_site.Cartn_x 26.63 _atom_site.Cartn_y -25.226 _atom_site.Cartn_z 28.541 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 43.83 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 488 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #