data_3Q0W # _model_server_result.job_id Kp1kMkEenEc3kci06nlKZA _model_server_result.datetime_utc '2025-01-10 18:41:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3q0w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":217}' # _entry.id 3Q0W # _exptl.entry_id 3Q0W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 334.436 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S)-2-amino-3-methyl-1-{4-[3-(thiophen-2-yl)-1,2,4-oxadiazol-5-yl]piperidin-1-yl}butan-1-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3Q0W _cell.length_a 119.82 _cell.length_b 119.82 _cell.length_c 33.59 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3Q0W _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 119.82 119.82 16.795 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H22 N4 O2 S' _chem_comp.formula_weight 334.436 _chem_comp.id LL5 _chem_comp.mon_nstd_flag . _chem_comp.name (2S)-2-amino-3-methyl-1-{4-[3-(thiophen-2-yl)-1,2,4-oxadiazol-5-yl]piperidin-1-yl}butan-1-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C22 C20 LL5 sing 194 n n C22 H22 LL5 sing 195 n n C22 H22A LL5 sing 196 n n C22 H22B LL5 sing 197 n n C20 C19 LL5 sing 198 n n C20 C21 LL5 sing 199 n n C20 H20 LL5 sing 200 n n C21 H21 LL5 sing 201 n n C21 H21A LL5 sing 202 n n C21 H21B LL5 sing 203 n n C7 C19 LL5 sing 204 n n N33 C19 LL5 sing 205 n n C19 H19 LL5 sing 206 n n N33 HN33 LL5 sing 207 n n N33 HN3A LL5 sing 208 n n O32 C7 LL5 doub 209 n n C7 N1 LL5 sing 210 n n C6 N1 LL5 sing 211 n n N1 C2 LL5 sing 212 n n C3 C2 LL5 sing 213 n n C2 H2 LL5 sing 214 n n C2 H2A LL5 sing 215 n n C4 C3 LL5 sing 216 n n C3 H3 LL5 sing 217 n n C3 H3A LL5 sing 218 n n C5 C6 LL5 sing 219 n n C6 H6 LL5 sing 220 n n C6 H6A LL5 sing 221 n n C5 C4 LL5 sing 222 n n C5 H5 LL5 sing 223 n n C5 H5A LL5 sing 224 n n C14 C4 LL5 sing 225 n n C4 H4 LL5 sing 226 n n O26 C14 LL5 sing 227 n y C14 N23 LL5 doub 228 n y C24 N23 LL5 sing 229 n y N25 O26 LL5 sing 230 n y N25 C24 LL5 doub 231 n y C24 C27 LL5 sing 232 n y S28 C27 LL5 sing 233 n y C27 C31 LL5 doub 234 n y C30 C31 LL5 sing 235 n y C31 H31 LL5 sing 236 n n C29 C30 LL5 doub 237 n y C30 H30 LL5 sing 238 n n S28 C29 LL5 sing 239 n y C29 H29 LL5 sing 240 n n # _atom_sites.entry_id 3Q0W _atom_sites.fract_transf_matrix[1][1] 0.008346 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008346 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.029771 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LL5 A 1 217 217 LL5 LL5 . C 3 GOL A 1 218 218 GOL GOL . D 4 HOH A 1 219 219 HOH HOH . D 4 HOH A 2 220 220 HOH HOH . D 4 HOH A 3 221 221 HOH HOH . D 4 HOH A 4 222 222 HOH HOH . D 4 HOH A 5 223 223 HOH HOH . D 4 HOH A 6 224 224 HOH HOH . D 4 HOH A 7 225 225 HOH HOH . D 4 HOH A 8 226 226 HOH HOH . D 4 HOH A 9 227 227 HOH HOH . D 4 HOH A 10 228 228 HOH HOH . D 4 HOH A 11 229 229 HOH HOH . D 4 HOH A 12 230 230 HOH HOH . D 4 HOH A 13 231 231 HOH HOH . D 4 HOH A 14 232 232 HOH HOH . D 4 HOH A 15 233 233 HOH HOH . D 4 HOH A 16 234 234 HOH HOH . D 4 HOH A 17 235 235 HOH HOH . D 4 HOH A 18 236 236 HOH HOH . D 4 HOH A 19 237 237 HOH HOH . D 4 HOH A 20 238 238 HOH HOH . D 4 HOH A 21 239 239 HOH HOH . D 4 HOH A 22 240 240 HOH HOH . D 4 HOH A 23 241 241 HOH HOH . D 4 HOH A 24 242 242 HOH HOH . D 4 HOH A 25 243 243 HOH HOH . D 4 HOH A 26 244 244 HOH HOH . D 4 HOH A 27 245 245 HOH HOH . D 4 HOH A 28 246 246 HOH HOH . D 4 HOH A 29 247 247 HOH HOH . D 4 HOH A 30 248 248 HOH HOH . D 4 HOH A 31 249 249 HOH HOH . D 4 HOH A 32 250 250 HOH HOH . D 4 HOH A 33 251 251 HOH HOH . D 4 HOH A 34 252 252 HOH HOH . D 4 HOH A 35 253 253 HOH HOH . D 4 HOH A 36 254 254 HOH HOH . D 4 HOH A 37 255 255 HOH HOH . D 4 HOH A 38 256 256 HOH HOH . D 4 HOH A 39 257 257 HOH HOH . D 4 HOH A 40 258 258 HOH HOH . D 4 HOH A 41 259 259 HOH HOH . D 4 HOH A 42 260 260 HOH HOH . D 4 HOH A 43 261 261 HOH HOH . D 4 HOH A 44 262 262 HOH HOH . D 4 HOH A 45 263 263 HOH HOH . D 4 HOH A 46 264 264 HOH HOH . D 4 HOH A 47 265 265 HOH HOH . D 4 HOH A 48 266 266 HOH HOH . D 4 HOH A 49 267 267 HOH HOH . D 4 HOH A 50 268 268 HOH HOH . D 4 HOH A 51 269 269 HOH HOH . D 4 HOH A 52 270 270 HOH HOH . D 4 HOH A 53 271 271 HOH HOH . D 4 HOH A 54 272 272 HOH HOH . D 4 HOH A 55 273 273 HOH HOH . D 4 HOH A 56 274 274 HOH HOH . D 4 HOH A 57 275 275 HOH HOH . D 4 HOH A 58 276 276 HOH HOH . D 4 HOH A 59 277 277 HOH HOH . D 4 HOH A 60 278 278 HOH HOH . D 4 HOH A 61 279 279 HOH HOH . D 4 HOH A 62 280 280 HOH HOH . D 4 HOH A 63 281 281 HOH HOH . D 4 HOH A 64 282 282 HOH HOH . D 4 HOH A 65 283 283 HOH HOH . D 4 HOH A 66 284 284 HOH HOH . D 4 HOH A 67 285 285 HOH HOH . D 4 HOH A 68 286 286 HOH HOH . D 4 HOH A 69 287 287 HOH HOH . D 4 HOH A 70 288 288 HOH HOH . D 4 HOH A 71 289 289 HOH HOH . D 4 HOH A 72 290 290 HOH HOH . D 4 HOH A 73 291 291 HOH HOH . D 4 HOH A 74 292 292 HOH HOH . D 4 HOH A 75 293 293 HOH HOH . D 4 HOH A 76 294 294 HOH HOH . D 4 HOH A 77 295 295 HOH HOH . D 4 HOH A 78 296 296 HOH HOH . D 4 HOH A 79 297 297 HOH HOH . D 4 HOH A 80 298 298 HOH HOH . D 4 HOH A 81 299 299 HOH HOH . D 4 HOH A 82 300 300 HOH HOH . D 4 HOH A 83 301 301 HOH HOH . D 4 HOH A 84 302 302 HOH HOH . D 4 HOH A 85 303 303 HOH HOH . D 4 HOH A 86 304 304 HOH HOH . D 4 HOH A 87 305 305 HOH HOH . D 4 HOH A 88 306 306 HOH HOH . D 4 HOH A 89 307 307 HOH HOH . D 4 HOH A 90 308 308 HOH HOH . D 4 HOH A 91 309 309 HOH HOH . D 4 HOH A 92 310 310 HOH HOH . D 4 HOH A 93 311 311 HOH HOH . D 4 HOH A 94 312 312 HOH HOH . D 4 HOH A 95 313 313 HOH HOH . D 4 HOH A 96 314 314 HOH HOH . D 4 HOH A 97 315 315 HOH HOH . D 4 HOH A 98 316 316 HOH HOH . D 4 HOH A 99 317 317 HOH HOH . D 4 HOH A 100 318 318 HOH HOH . D 4 HOH A 101 319 319 HOH HOH . D 4 HOH A 102 320 320 HOH HOH . D 4 HOH A 103 321 321 HOH HOH . D 4 HOH A 104 322 322 HOH HOH . D 4 HOH A 105 323 323 HOH HOH . D 4 HOH A 106 324 324 HOH HOH . D 4 HOH A 107 325 325 HOH HOH . D 4 HOH A 108 326 326 HOH HOH . D 4 HOH A 109 327 327 HOH HOH . D 4 HOH A 110 328 328 HOH HOH . D 4 HOH A 111 329 329 HOH HOH . D 4 HOH A 112 330 330 HOH HOH . D 4 HOH A 113 331 331 HOH HOH . D 4 HOH A 114 332 332 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C22 LL5 . . . B 2 37.123 61.689 11.818 1 33.02 ? C22 LL5 217 A 1 HETATM 2 C C20 LL5 . . . B 2 37.656 60.493 12.576 1 28.23 ? C20 LL5 217 A 1 HETATM 3 C C21 LL5 . . . B 2 38.823 60.761 13.575 1 23.43 ? C21 LL5 217 A 1 HETATM 4 C C19 LL5 . . . B 2 36.486 59.759 13.301 1 29.51 ? C19 LL5 217 A 1 HETATM 5 N N33 LL5 . . . B 2 36.89 58.319 13.254 1 32.64 ? N33 LL5 217 A 1 HETATM 6 C C7 LL5 . . . B 2 35.177 59.969 12.515 1 30.29 ? C7 LL5 217 A 1 HETATM 7 O O32 LL5 . . . B 2 34.854 59.272 11.529 1 31.69 ? O32 LL5 217 A 1 HETATM 8 N N1 LL5 . . . B 2 34.306 60.894 12.856 1 24.15 ? N1 LL5 217 A 1 HETATM 9 C C2 LL5 . . . B 2 34.536 61.889 13.937 1 27.78 ? C2 LL5 217 A 1 HETATM 10 C C3 LL5 . . . B 2 34.75 63.227 13.202 1 24 ? C3 LL5 217 A 1 HETATM 11 C C6 LL5 . . . B 2 33.094 61.142 12.042 1 24.52 ? C6 LL5 217 A 1 HETATM 12 C C5 LL5 . . . B 2 33.18 62.54 11.385 1 24.65 ? C5 LL5 217 A 1 HETATM 13 C C4 LL5 . . . B 2 33.474 63.619 12.487 1 22.42 ? C4 LL5 217 A 1 HETATM 14 C C14 LL5 . . . B 2 33.648 64.966 11.807 1 24.38 ? C14 LL5 217 A 1 HETATM 15 N N23 LL5 . . . B 2 33.288 66.072 12.334 1 23.03 ? N23 LL5 217 A 1 HETATM 16 O O26 LL5 . . . B 2 34.194 65.137 10.621 1 25.63 ? O26 LL5 217 A 1 HETATM 17 N N25 LL5 . . . B 2 34.202 66.6 10.421 1 25.54 ? N25 LL5 217 A 1 HETATM 18 C C24 LL5 . . . B 2 33.582 67.079 11.476 1 21.63 ? C24 LL5 217 A 1 HETATM 19 C C27 LL5 . . . B 2 33.353 68.399 11.714 1 21.3 ? C27 LL5 217 A 1 HETATM 20 C C31 LL5 . . . B 2 33.06 68.968 12.862 1 17.52 ? C31 LL5 217 A 1 HETATM 21 C C30 LL5 . . . B 2 33.007 70.337 12.688 1 17.28 ? C30 LL5 217 A 1 HETATM 22 C C29 LL5 . . . B 2 33.225 70.903 11.454 1 17.94 ? C29 LL5 217 A 1 HETATM 23 S S28 LL5 . . . B 2 33.55 69.588 10.497 1 25.27 ? S28 LL5 217 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 23 #