data_3Q15 # _model_server_result.job_id KZ-QGlXH-w9uZXayasvzCg _model_server_result.datetime_utc '2024-11-14 23:34:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3q15 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":377}' # _entry.id 3Q15 # _exptl.entry_id 3Q15 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.57 _cell.angle_gamma 90 _cell.entry_id 3Q15 _cell.length_a 95.064 _cell.length_b 157.452 _cell.length_c 84.715 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3Q15 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,I,K,M 1 1,2 B,D,G,H,J,L,N 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 65.299259 0 79.313879 3 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C OD1 ASP 13 C ASP 11 1_555 I MG MG . C MG 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc2 C OD1 ASP 56 C ASP 54 1_555 I MG MG . C MG 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc3 C O LYS 58 C LYS 56 1_555 I MG MG . C MG 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc4 D OD1 ASP 13 D ASP 11 1_555 J MG MG . D MG 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc5 D OD1 ASP 56 D ASP 54 1_555 J MG MG . D MG 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc6 D O LYS 58 D LYS 56 1_555 J MG MG . D MG 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3Q15 _atom_sites.fract_transf_matrix[1][1] 0.010519 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003947 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006351 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012608 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GOL A 1 377 377 GOL GOL . F 4 SO4 A 1 378 378 SO4 SO4 . G 3 GOL B 1 377 377 GOL GOL . H 4 SO4 B 1 378 378 SO4 SO4 . I 5 MG C 1 125 125 MG MG . J 5 MG D 1 125 125 MG MG . K 6 HOH A 1 379 1 HOH HOH . K 6 HOH A 2 380 3 HOH HOH . K 6 HOH A 3 381 4 HOH HOH . K 6 HOH A 4 382 5 HOH HOH . K 6 HOH A 5 383 6 HOH HOH . K 6 HOH A 6 384 7 HOH HOH . K 6 HOH A 7 385 9 HOH HOH . K 6 HOH A 8 386 10 HOH HOH . K 6 HOH A 9 387 15 HOH HOH . K 6 HOH A 10 388 17 HOH HOH . K 6 HOH A 11 389 18 HOH HOH . K 6 HOH A 12 390 19 HOH HOH . K 6 HOH A 13 391 22 HOH HOH . K 6 HOH A 14 392 23 HOH HOH . K 6 HOH A 15 393 25 HOH HOH . K 6 HOH A 16 394 26 HOH HOH . K 6 HOH A 17 395 28 HOH HOH . K 6 HOH A 18 396 29 HOH HOH . K 6 HOH A 19 397 32 HOH HOH . K 6 HOH A 20 398 33 HOH HOH . K 6 HOH A 21 399 34 HOH HOH . K 6 HOH A 22 400 35 HOH HOH . K 6 HOH A 23 401 36 HOH HOH . K 6 HOH A 24 402 37 HOH HOH . K 6 HOH A 25 403 38 HOH HOH . K 6 HOH A 26 404 40 HOH HOH . K 6 HOH A 27 405 41 HOH HOH . K 6 HOH A 28 406 43 HOH HOH . K 6 HOH A 29 407 45 HOH HOH . K 6 HOH A 30 408 46 HOH HOH . K 6 HOH A 31 409 47 HOH HOH . K 6 HOH A 32 410 49 HOH HOH . K 6 HOH A 33 411 51 HOH HOH . K 6 HOH A 34 412 52 HOH HOH . K 6 HOH A 35 413 53 HOH HOH . K 6 HOH A 36 414 55 HOH HOH . K 6 HOH A 37 415 57 HOH HOH . K 6 HOH A 38 416 59 HOH HOH . K 6 HOH A 39 417 61 HOH HOH . K 6 HOH A 40 418 63 HOH HOH . K 6 HOH A 41 419 65 HOH HOH . K 6 HOH A 42 420 66 HOH HOH . K 6 HOH A 43 421 67 HOH HOH . K 6 HOH A 44 422 69 HOH HOH . K 6 HOH A 45 423 71 HOH HOH . K 6 HOH A 46 424 73 HOH HOH . K 6 HOH A 47 425 77 HOH HOH . K 6 HOH A 48 426 79 HOH HOH . K 6 HOH A 49 427 80 HOH HOH . K 6 HOH A 50 428 81 HOH HOH . K 6 HOH A 51 429 84 HOH HOH . K 6 HOH A 52 430 85 HOH HOH . K 6 HOH A 53 431 88 HOH HOH . K 6 HOH A 54 432 89 HOH HOH . K 6 HOH A 55 433 90 HOH HOH . K 6 HOH A 56 434 91 HOH HOH . K 6 HOH A 57 435 92 HOH HOH . K 6 HOH A 58 436 93 HOH HOH . K 6 HOH A 59 437 98 HOH HOH . K 6 HOH A 60 438 99 HOH HOH . K 6 HOH A 61 439 100 HOH HOH . K 6 HOH A 62 440 101 HOH HOH . K 6 HOH A 63 441 102 HOH HOH . K 6 HOH A 64 442 103 HOH HOH . K 6 HOH A 65 443 104 HOH HOH . K 6 HOH A 66 444 105 HOH HOH . K 6 HOH A 67 445 106 HOH HOH . K 6 HOH A 68 446 107 HOH HOH . K 6 HOH A 69 447 109 HOH HOH . K 6 HOH A 70 448 110 HOH HOH . K 6 HOH A 71 449 111 HOH HOH . K 6 HOH A 72 450 113 HOH HOH . K 6 HOH A 73 451 114 HOH HOH . K 6 HOH A 74 452 115 HOH HOH . K 6 HOH A 75 453 118 HOH HOH . K 6 HOH A 76 454 119 HOH HOH . K 6 HOH A 77 455 120 HOH HOH . K 6 HOH A 78 456 121 HOH HOH . K 6 HOH A 79 457 124 HOH HOH . K 6 HOH A 80 458 126 HOH HOH . K 6 HOH A 81 459 128 HOH HOH . K 6 HOH A 82 460 130 HOH HOH . K 6 HOH A 83 461 131 HOH HOH . K 6 HOH A 84 462 133 HOH HOH . K 6 HOH A 85 463 135 HOH HOH . K 6 HOH A 86 464 137 HOH HOH . K 6 HOH A 87 465 138 HOH HOH . K 6 HOH A 88 466 139 HOH HOH . K 6 HOH A 89 467 140 HOH HOH . K 6 HOH A 90 468 141 HOH HOH . K 6 HOH A 91 469 142 HOH HOH . K 6 HOH A 92 470 143 HOH HOH . K 6 HOH A 93 471 144 HOH HOH . K 6 HOH A 94 472 147 HOH HOH . K 6 HOH A 95 473 148 HOH HOH . K 6 HOH A 96 474 149 HOH HOH . K 6 HOH A 97 475 151 HOH HOH . K 6 HOH A 98 476 152 HOH HOH . K 6 HOH A 99 477 154 HOH HOH . K 6 HOH A 100 478 160 HOH HOH . K 6 HOH A 101 479 161 HOH HOH . K 6 HOH A 102 480 162 HOH HOH . K 6 HOH A 103 481 164 HOH HOH . K 6 HOH A 104 482 165 HOH HOH . K 6 HOH A 105 483 167 HOH HOH . K 6 HOH A 106 484 176 HOH HOH . K 6 HOH A 107 485 177 HOH HOH . K 6 HOH A 108 486 181 HOH HOH . K 6 HOH A 109 487 189 HOH HOH . K 6 HOH A 110 488 190 HOH HOH . K 6 HOH A 111 489 191 HOH HOH . K 6 HOH A 112 490 192 HOH HOH . K 6 HOH A 113 491 193 HOH HOH . K 6 HOH A 114 492 197 HOH HOH . K 6 HOH A 115 493 198 HOH HOH . K 6 HOH A 116 494 199 HOH HOH . K 6 HOH A 117 495 200 HOH HOH . K 6 HOH A 118 496 201 HOH HOH . K 6 HOH A 119 497 202 HOH HOH . K 6 HOH A 120 498 203 HOH HOH . K 6 HOH A 121 499 206 HOH HOH . K 6 HOH A 122 500 207 HOH HOH . K 6 HOH A 123 501 215 HOH HOH . K 6 HOH A 124 502 216 HOH HOH . K 6 HOH A 125 503 217 HOH HOH . K 6 HOH A 126 504 218 HOH HOH . K 6 HOH A 127 505 219 HOH HOH . K 6 HOH A 128 506 220 HOH HOH . K 6 HOH A 129 507 221 HOH HOH . K 6 HOH A 130 508 222 HOH HOH . K 6 HOH A 131 509 228 HOH HOH . K 6 HOH A 132 510 229 HOH HOH . K 6 HOH A 133 511 230 HOH HOH . K 6 HOH A 134 512 231 HOH HOH . K 6 HOH A 135 513 232 HOH HOH . K 6 HOH A 136 514 236 HOH HOH . L 6 HOH B 1 379 8 HOH HOH . L 6 HOH B 2 380 11 HOH HOH . L 6 HOH B 3 381 12 HOH HOH . L 6 HOH B 4 382 14 HOH HOH . L 6 HOH B 5 383 16 HOH HOH . L 6 HOH B 6 384 20 HOH HOH . L 6 HOH B 7 385 21 HOH HOH . L 6 HOH B 8 386 24 HOH HOH . L 6 HOH B 9 387 27 HOH HOH . L 6 HOH B 10 388 31 HOH HOH . L 6 HOH B 11 389 39 HOH HOH . L 6 HOH B 12 390 42 HOH HOH . L 6 HOH B 13 391 44 HOH HOH . L 6 HOH B 14 392 48 HOH HOH . L 6 HOH B 15 393 50 HOH HOH . L 6 HOH B 16 394 54 HOH HOH . L 6 HOH B 17 395 56 HOH HOH . L 6 HOH B 18 396 58 HOH HOH . L 6 HOH B 19 397 60 HOH HOH . L 6 HOH B 20 398 62 HOH HOH . L 6 HOH B 21 399 64 HOH HOH . L 6 HOH B 22 400 68 HOH HOH . L 6 HOH B 23 401 70 HOH HOH . L 6 HOH B 24 402 72 HOH HOH . L 6 HOH B 25 403 74 HOH HOH . L 6 HOH B 26 404 75 HOH HOH . L 6 HOH B 27 405 76 HOH HOH . L 6 HOH B 28 406 78 HOH HOH . L 6 HOH B 29 407 82 HOH HOH . L 6 HOH B 30 408 87 HOH HOH . L 6 HOH B 31 409 94 HOH HOH . L 6 HOH B 32 410 95 HOH HOH . L 6 HOH B 33 411 96 HOH HOH . L 6 HOH B 34 412 97 HOH HOH . L 6 HOH B 35 413 112 HOH HOH . L 6 HOH B 36 414 116 HOH HOH . L 6 HOH B 37 415 117 HOH HOH . L 6 HOH B 38 416 122 HOH HOH . L 6 HOH B 39 417 125 HOH HOH . L 6 HOH B 40 418 127 HOH HOH . L 6 HOH B 41 419 129 HOH HOH . L 6 HOH B 42 420 132 HOH HOH . L 6 HOH B 43 421 134 HOH HOH . L 6 HOH B 44 422 136 HOH HOH . L 6 HOH B 45 423 146 HOH HOH . L 6 HOH B 46 424 156 HOH HOH . L 6 HOH B 47 425 158 HOH HOH . L 6 HOH B 48 426 159 HOH HOH . L 6 HOH B 49 427 163 HOH HOH . L 6 HOH B 50 428 166 HOH HOH . L 6 HOH B 51 429 168 HOH HOH . L 6 HOH B 52 430 169 HOH HOH . L 6 HOH B 53 431 170 HOH HOH . L 6 HOH B 54 432 171 HOH HOH . L 6 HOH B 55 433 173 HOH HOH . L 6 HOH B 56 434 174 HOH HOH . L 6 HOH B 57 435 175 HOH HOH . L 6 HOH B 58 436 178 HOH HOH . L 6 HOH B 59 437 179 HOH HOH . L 6 HOH B 60 438 180 HOH HOH . L 6 HOH B 61 439 182 HOH HOH . L 6 HOH B 62 440 183 HOH HOH . L 6 HOH B 63 441 184 HOH HOH . L 6 HOH B 64 442 185 HOH HOH . L 6 HOH B 65 443 186 HOH HOH . L 6 HOH B 66 444 187 HOH HOH . L 6 HOH B 67 445 188 HOH HOH . L 6 HOH B 68 446 194 HOH HOH . L 6 HOH B 69 447 195 HOH HOH . L 6 HOH B 70 448 196 HOH HOH . L 6 HOH B 71 449 204 HOH HOH . L 6 HOH B 72 450 205 HOH HOH . L 6 HOH B 73 451 208 HOH HOH . L 6 HOH B 74 452 210 HOH HOH . L 6 HOH B 75 453 211 HOH HOH . L 6 HOH B 76 454 212 HOH HOH . L 6 HOH B 77 455 213 HOH HOH . L 6 HOH B 78 456 214 HOH HOH . L 6 HOH B 79 457 224 HOH HOH . L 6 HOH B 80 458 226 HOH HOH . L 6 HOH B 81 459 227 HOH HOH . L 6 HOH B 82 460 233 HOH HOH . L 6 HOH B 83 461 234 HOH HOH . M 6 HOH C 1 126 2 HOH HOH . M 6 HOH C 2 127 13 HOH HOH . M 6 HOH C 3 128 83 HOH HOH . M 6 HOH C 4 129 86 HOH HOH . M 6 HOH C 5 130 123 HOH HOH . M 6 HOH C 6 145 145 HOH HOH . M 6 HOH C 7 150 150 HOH HOH . M 6 HOH C 8 153 153 HOH HOH . M 6 HOH C 9 155 155 HOH HOH . M 6 HOH C 10 209 209 HOH HOH . M 6 HOH C 11 225 225 HOH HOH . M 6 HOH C 12 235 235 HOH HOH . N 6 HOH D 1 126 30 HOH HOH . N 6 HOH D 2 127 108 HOH HOH . N 6 HOH D 3 157 157 HOH HOH . N 6 HOH D 4 172 172 HOH HOH . N 6 HOH D 5 223 223 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 3 35.467 144.664 42.213 1 34.01 ? C1 GOL 377 A 1 HETATM 2 O O1 GOL . . . E 3 36.153 144.569 40.984 1 30.5 ? O1 GOL 377 A 1 HETATM 3 C C2 GOL . . . E 3 34.24 143.758 42.208 1 38.75 ? C2 GOL 377 A 1 HETATM 4 O O2 GOL . . . E 3 34.468 142.627 41.401 1 41.37 ? O2 GOL 377 A 1 HETATM 5 C C3 GOL . . . E 3 33.043 144.536 41.682 1 41.2 ? C3 GOL 377 A 1 HETATM 6 O O3 GOL . . . E 3 32.825 145.652 42.517 1 44.31 ? O3 GOL 377 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 6 #