data_3Q1S # _model_server_result.job_id 7BPO44KSEARfM7Y--ug7Jg _model_server_result.datetime_utc '2024-11-28 06:13:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3q1s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":9}' # _entry.id 3Q1S # _exptl.entry_id 3Q1S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3Q1S _cell.length_a 56.623 _cell.length_b 99.216 _cell.length_c 105.533 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3Q1S _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N ? 5 H N N ? 5 I N N ? 5 J N N ? 5 K N N ? 5 L N N ? 5 M N N ? 5 N N N ? 5 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 21 L CYS 23 1_555 A SG CYS 86 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? disulf ? disulf2 A SG CYS 132 L CYS 134 1_555 A SG CYS 192 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? disulf ? disulf3 B SG CYS 22 H CYS 22 1_555 B SG CYS 95 H CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? disulf ? disulf4 B SG CYS 152 H CYS 152 1_555 B SG CYS 208 H CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf5 C SG CYS 12 I CYS 40 1_555 C SG CYS 104 I CYS 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf6 C SG CYS 61 I CYS 89 1_555 C SG CYS 150 I CYS 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3Q1S _atom_sites.fract_transf_matrix[1][1] 0.017661 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010079 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009476 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 IPA L 1 1 1 IPA IOH . E 4 IPA L 1 2 2 IPA IOH . F 5 GOL L 1 215 3 GOL GOL . G 5 GOL L 1 216 6 GOL GOL . H 5 GOL L 1 217 7 GOL GOL . I 5 GOL L 1 218 10 GOL GOL . J 5 GOL H 1 231 1 GOL GOL . K 5 GOL H 1 232 4 GOL GOL . L 5 GOL H 1 233 5 GOL GOL . M 5 GOL H 1 234 8 GOL GOL . N 5 GOL I 1 2 2 GOL GOL . O 5 GOL I 1 9 9 GOL GOL . P 6 HOH L 1 219 219 HOH HOH . P 6 HOH L 2 220 220 HOH HOH . P 6 HOH L 3 221 221 HOH HOH . P 6 HOH L 4 222 222 HOH HOH . P 6 HOH L 5 223 223 HOH HOH . P 6 HOH L 6 224 2 HOH HOH . P 6 HOH L 7 225 3 HOH HOH . P 6 HOH L 8 226 6 HOH HOH . P 6 HOH L 9 227 11 HOH HOH . P 6 HOH L 10 228 228 HOH HOH . P 6 HOH L 11 229 15 HOH HOH . P 6 HOH L 12 230 230 HOH HOH . P 6 HOH L 13 231 24 HOH HOH . P 6 HOH L 14 232 25 HOH HOH . P 6 HOH L 15 233 29 HOH HOH . P 6 HOH L 16 234 32 HOH HOH . P 6 HOH L 17 235 33 HOH HOH . P 6 HOH L 18 236 236 HOH HOH . P 6 HOH L 19 237 35 HOH HOH . P 6 HOH L 20 238 39 HOH HOH . P 6 HOH L 21 239 42 HOH HOH . P 6 HOH L 22 240 240 HOH HOH . P 6 HOH L 23 241 241 HOH HOH . P 6 HOH L 24 242 242 HOH HOH . P 6 HOH L 25 243 243 HOH HOH . P 6 HOH L 26 244 43 HOH HOH . P 6 HOH L 27 245 45 HOH HOH . P 6 HOH L 28 246 48 HOH HOH . P 6 HOH L 29 247 247 HOH HOH . P 6 HOH L 30 248 55 HOH HOH . P 6 HOH L 31 249 249 HOH HOH . P 6 HOH L 32 250 57 HOH HOH . P 6 HOH L 33 251 59 HOH HOH . P 6 HOH L 34 252 69 HOH HOH . P 6 HOH L 35 253 70 HOH HOH . P 6 HOH L 36 254 73 HOH HOH . P 6 HOH L 37 255 74 HOH HOH . P 6 HOH L 38 256 77 HOH HOH . P 6 HOH L 39 257 79 HOH HOH . P 6 HOH L 40 258 82 HOH HOH . P 6 HOH L 41 259 86 HOH HOH . P 6 HOH L 42 260 87 HOH HOH . P 6 HOH L 43 261 90 HOH HOH . P 6 HOH L 44 262 92 HOH HOH . P 6 HOH L 45 263 103 HOH HOH . P 6 HOH L 46 264 104 HOH HOH . P 6 HOH L 47 265 109 HOH HOH . P 6 HOH L 48 266 110 HOH HOH . P 6 HOH L 49 267 117 HOH HOH . P 6 HOH L 50 268 118 HOH HOH . P 6 HOH L 51 269 120 HOH HOH . P 6 HOH L 52 270 121 HOH HOH . P 6 HOH L 53 271 123 HOH HOH . P 6 HOH L 54 272 124 HOH HOH . P 6 HOH L 55 273 131 HOH HOH . P 6 HOH L 56 274 132 HOH HOH . P 6 HOH L 57 275 137 HOH HOH . P 6 HOH L 58 276 139 HOH HOH . P 6 HOH L 59 277 141 HOH HOH . P 6 HOH L 60 278 144 HOH HOH . P 6 HOH L 61 279 145 HOH HOH . P 6 HOH L 62 280 146 HOH HOH . P 6 HOH L 63 281 154 HOH HOH . P 6 HOH L 64 282 158 HOH HOH . P 6 HOH L 65 283 159 HOH HOH . P 6 HOH L 66 284 160 HOH HOH . P 6 HOH L 67 285 161 HOH HOH . P 6 HOH L 68 286 163 HOH HOH . P 6 HOH L 69 287 165 HOH HOH . P 6 HOH L 70 288 166 HOH HOH . P 6 HOH L 71 289 170 HOH HOH . P 6 HOH L 72 290 172 HOH HOH . P 6 HOH L 73 291 175 HOH HOH . P 6 HOH L 74 292 179 HOH HOH . P 6 HOH L 75 293 184 HOH HOH . P 6 HOH L 76 294 199 HOH HOH . P 6 HOH L 77 295 200 HOH HOH . P 6 HOH L 78 296 201 HOH HOH . P 6 HOH L 79 297 203 HOH HOH . P 6 HOH L 80 298 204 HOH HOH . P 6 HOH L 81 299 207 HOH HOH . P 6 HOH L 82 300 212 HOH HOH . P 6 HOH L 83 301 214 HOH HOH . P 6 HOH L 84 302 215 HOH HOH . P 6 HOH L 85 303 218 HOH HOH . Q 6 HOH H 1 235 1 HOH HOH . Q 6 HOH H 2 236 5 HOH HOH . Q 6 HOH H 3 237 7 HOH HOH . Q 6 HOH H 4 238 238 HOH HOH . Q 6 HOH H 5 239 239 HOH HOH . Q 6 HOH H 6 240 8 HOH HOH . Q 6 HOH H 7 241 9 HOH HOH . Q 6 HOH H 8 242 12 HOH HOH . Q 6 HOH H 9 243 13 HOH HOH . Q 6 HOH H 10 244 17 HOH HOH . Q 6 HOH H 11 245 18 HOH HOH . Q 6 HOH H 12 246 246 HOH HOH . Q 6 HOH H 13 247 19 HOH HOH . Q 6 HOH H 14 248 248 HOH HOH . Q 6 HOH H 15 249 20 HOH HOH . Q 6 HOH H 16 250 250 HOH HOH . Q 6 HOH H 17 251 21 HOH HOH . Q 6 HOH H 18 252 22 HOH HOH . Q 6 HOH H 19 253 27 HOH HOH . Q 6 HOH H 20 254 28 HOH HOH . Q 6 HOH H 21 255 30 HOH HOH . Q 6 HOH H 22 256 31 HOH HOH . Q 6 HOH H 23 257 34 HOH HOH . Q 6 HOH H 24 258 36 HOH HOH . Q 6 HOH H 25 259 40 HOH HOH . Q 6 HOH H 26 260 41 HOH HOH . Q 6 HOH H 27 261 46 HOH HOH . Q 6 HOH H 28 262 49 HOH HOH . Q 6 HOH H 29 263 50 HOH HOH . Q 6 HOH H 30 264 51 HOH HOH . Q 6 HOH H 31 265 52 HOH HOH . Q 6 HOH H 32 266 56 HOH HOH . Q 6 HOH H 33 267 60 HOH HOH . Q 6 HOH H 34 268 61 HOH HOH . Q 6 HOH H 35 269 62 HOH HOH . Q 6 HOH H 36 270 67 HOH HOH . Q 6 HOH H 37 271 68 HOH HOH . Q 6 HOH H 38 272 80 HOH HOH . Q 6 HOH H 39 273 84 HOH HOH . Q 6 HOH H 40 274 85 HOH HOH . Q 6 HOH H 41 275 88 HOH HOH . Q 6 HOH H 42 276 91 HOH HOH . Q 6 HOH H 43 277 93 HOH HOH . Q 6 HOH H 44 278 94 HOH HOH . Q 6 HOH H 45 279 95 HOH HOH . Q 6 HOH H 46 280 99 HOH HOH . Q 6 HOH H 47 281 100 HOH HOH . Q 6 HOH H 48 282 102 HOH HOH . Q 6 HOH H 49 283 105 HOH HOH . Q 6 HOH H 50 284 108 HOH HOH . Q 6 HOH H 51 285 113 HOH HOH . Q 6 HOH H 52 286 114 HOH HOH . Q 6 HOH H 53 287 116 HOH HOH . Q 6 HOH H 54 288 119 HOH HOH . Q 6 HOH H 55 289 125 HOH HOH . Q 6 HOH H 56 290 126 HOH HOH . Q 6 HOH H 57 291 127 HOH HOH . Q 6 HOH H 58 292 133 HOH HOH . Q 6 HOH H 59 293 136 HOH HOH . Q 6 HOH H 60 294 138 HOH HOH . Q 6 HOH H 61 295 140 HOH HOH . Q 6 HOH H 62 296 147 HOH HOH . Q 6 HOH H 63 297 148 HOH HOH . Q 6 HOH H 64 298 149 HOH HOH . Q 6 HOH H 65 299 151 HOH HOH . Q 6 HOH H 66 300 152 HOH HOH . Q 6 HOH H 67 301 153 HOH HOH . Q 6 HOH H 68 302 155 HOH HOH . Q 6 HOH H 69 303 156 HOH HOH . Q 6 HOH H 70 304 157 HOH HOH . Q 6 HOH H 71 305 162 HOH HOH . Q 6 HOH H 72 306 164 HOH HOH . Q 6 HOH H 73 307 171 HOH HOH . Q 6 HOH H 74 308 174 HOH HOH . Q 6 HOH H 75 309 176 HOH HOH . Q 6 HOH H 76 310 177 HOH HOH . Q 6 HOH H 77 311 181 HOH HOH . Q 6 HOH H 78 312 182 HOH HOH . Q 6 HOH H 79 313 183 HOH HOH . Q 6 HOH H 80 314 188 HOH HOH . Q 6 HOH H 81 315 190 HOH HOH . Q 6 HOH H 82 316 191 HOH HOH . Q 6 HOH H 83 317 192 HOH HOH . Q 6 HOH H 84 318 202 HOH HOH . Q 6 HOH H 85 319 205 HOH HOH . Q 6 HOH H 86 320 210 HOH HOH . Q 6 HOH H 87 321 213 HOH HOH . Q 6 HOH H 88 322 224 HOH HOH . Q 6 HOH H 89 323 225 HOH HOH . Q 6 HOH H 90 324 226 HOH HOH . Q 6 HOH H 91 325 227 HOH HOH . Q 6 HOH H 92 326 229 HOH HOH . Q 6 HOH H 93 327 232 HOH HOH . R 6 HOH I 1 26 26 HOH HOH . R 6 HOH I 2 180 58 HOH HOH . R 6 HOH I 3 181 63 HOH HOH . R 6 HOH I 4 182 64 HOH HOH . R 6 HOH I 5 183 65 HOH HOH . R 6 HOH I 6 184 81 HOH HOH . R 6 HOH I 7 185 89 HOH HOH . R 6 HOH I 8 186 186 HOH HOH . R 6 HOH I 9 187 98 HOH HOH . R 6 HOH I 10 188 112 HOH HOH . R 6 HOH I 11 189 122 HOH HOH . R 6 HOH I 12 190 128 HOH HOH . R 6 HOH I 13 191 135 HOH HOH . R 6 HOH I 14 192 143 HOH HOH . R 6 HOH I 15 193 169 HOH HOH . R 6 HOH I 16 194 194 HOH HOH . R 6 HOH I 17 195 178 HOH HOH . R 6 HOH I 18 208 208 HOH HOH . R 6 HOH I 19 209 209 HOH HOH . R 6 HOH I 20 216 216 HOH HOH . R 6 HOH I 21 234 234 HOH HOH . R 6 HOH I 22 235 235 HOH HOH . R 6 HOH I 23 237 237 HOH HOH . R 6 HOH I 24 244 244 HOH HOH . R 6 HOH I 25 245 245 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . O 5 -12.125 17.11 10.341 1 46.62 ? C1 GOL 9 I 1 HETATM 2 O O1 GOL . . . O 5 -12.03 18.519 10.4 1 42.88 ? O1 GOL 9 I 1 HETATM 3 C C2 GOL . . . O 5 -11.834 16.616 8.938 1 45.5 ? C2 GOL 9 I 1 HETATM 4 O O2 GOL . . . O 5 -12.846 17.139 8.126 1 49.72 ? O2 GOL 9 I 1 HETATM 5 C C3 GOL . . . O 5 -11.934 15.112 8.944 1 48.44 ? C3 GOL 9 I 1 HETATM 6 O O3 GOL . . . O 5 -13.089 14.79 9.714 1 49.98 ? O3 GOL 9 I 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #