data_3Q2Q # _model_server_result.job_id pkDCvytKhk9KnKioTCvm2g _model_server_result.datetime_utc '2024-11-22 23:26:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3q2q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":363}' # _entry.id 3Q2Q # _exptl.entry_id 3Q2Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3Q2Q _cell.length_a 71.659 _cell.length_b 71.659 _cell.length_c 150.919 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3Q2Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_645 y+1,x-1,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 107.4885 -62.058514 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 115 A ASP 113 1_555 C CA CA . A CA 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc2 A OD1 ASP 115 A ASP 113 1_555 C CA CA . A CA 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.738 ? metalc ? metalc3 A OD1 ASP 119 A ASP 117 1_555 C CA CA . A CA 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.581 ? metalc ? metalc4 A OD2 ASP 119 A ASP 117 1_555 C CA CA . A CA 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.744 ? metalc ? metalc5 A OD2 ASP 240 A ASP 238 1_555 D CA CA . A CA 361 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.429 ? metalc ? metalc6 A OE2 GLU 302 A GLU 300 1_555 G CA CA . A CA 364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? metalc ? metalc7 A OE1 GLU 302 A GLU 300 1_555 G CA CA . A CA 364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.977 ? metalc ? metalc8 A OG SER 305 A SER 303 1_555 G CA CA . A CA 364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc9 B O1A DMA . A DMA 359 1_555 C CA CA . A CA 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc10 B O3B DMA . A DMA 359 1_555 C CA CA . A CA 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc11 C CA CA . A CA 360 1_555 H O HOH . A HOH 552 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc12 C CA CA . A CA 360 1_555 H O HOH . A HOH 553 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.761 ? metalc ? metalc13 D CA CA . A CA 361 1_555 H O HOH . A HOH 548 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? metalc ? metalc14 D CA CA . A CA 361 1_555 H O HOH . A HOH 549 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc15 D CA CA . A CA 361 1_555 H O HOH . A HOH 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.856 ? metalc ? metalc16 D CA CA . A CA 361 1_555 H O HOH . A HOH 557 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? metalc ? metalc17 D CA CA . A CA 361 1_555 H O HOH . A HOH 562 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.114 ? metalc ? metalc18 G CA CA . A CA 364 1_555 H O HOH . A HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc19 G CA CA . A CA 364 1_555 H O HOH . A HOH 437 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 141 n n C1 C2 GOL sing 142 n n C1 H11 GOL sing 143 n n C1 H12 GOL sing 144 n n O1 HO1 GOL sing 145 n n C2 O2 GOL sing 146 n n C2 C3 GOL sing 147 n n C2 H2 GOL sing 148 n n O2 HO2 GOL sing 149 n n C3 O3 GOL sing 150 n n C3 H31 GOL sing 151 n n C3 H32 GOL sing 152 n n O3 HO3 GOL sing 153 n n # _atom_sites.entry_id 3Q2Q _atom_sites.fract_transf_matrix[1][1] 0.013955 _atom_sites.fract_transf_matrix[1][2] 0.008057 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016114 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006626 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMA A 1 359 1 DMA IPE . C 3 CA A 1 360 1 CA CA . D 3 CA A 1 361 1 CA CA . E 4 GOL A 1 362 1 GOL GOL . F 4 GOL A 1 363 1 GOL GOL . G 3 CA A 1 364 1 CA CA . H 5 HOH A 1 365 1 HOH HOH . H 5 HOH A 2 366 2 HOH HOH . H 5 HOH A 3 367 3 HOH HOH . H 5 HOH A 4 368 4 HOH HOH . H 5 HOH A 5 369 5 HOH HOH . H 5 HOH A 6 370 6 HOH HOH . H 5 HOH A 7 371 7 HOH HOH . H 5 HOH A 8 372 8 HOH HOH . H 5 HOH A 9 373 9 HOH HOH . H 5 HOH A 10 374 10 HOH HOH . H 5 HOH A 11 375 11 HOH HOH . H 5 HOH A 12 376 12 HOH HOH . H 5 HOH A 13 377 13 HOH HOH . H 5 HOH A 14 378 14 HOH HOH . H 5 HOH A 15 379 15 HOH HOH . H 5 HOH A 16 380 16 HOH HOH . H 5 HOH A 17 381 17 HOH HOH . H 5 HOH A 18 382 18 HOH HOH . H 5 HOH A 19 383 19 HOH HOH . H 5 HOH A 20 384 20 HOH HOH . H 5 HOH A 21 385 21 HOH HOH . H 5 HOH A 22 386 22 HOH HOH . H 5 HOH A 23 387 24 HOH HOH . H 5 HOH A 24 388 25 HOH HOH . H 5 HOH A 25 389 26 HOH HOH . H 5 HOH A 26 390 27 HOH HOH . H 5 HOH A 27 391 28 HOH HOH . H 5 HOH A 28 392 29 HOH HOH . H 5 HOH A 29 393 30 HOH HOH . H 5 HOH A 30 394 31 HOH HOH . H 5 HOH A 31 395 32 HOH HOH . H 5 HOH A 32 396 33 HOH HOH . H 5 HOH A 33 397 34 HOH HOH . H 5 HOH A 34 398 35 HOH HOH . H 5 HOH A 35 399 36 HOH HOH . H 5 HOH A 36 400 37 HOH HOH . H 5 HOH A 37 401 38 HOH HOH . H 5 HOH A 38 402 39 HOH HOH . H 5 HOH A 39 403 40 HOH HOH . H 5 HOH A 40 404 41 HOH HOH . H 5 HOH A 41 405 42 HOH HOH . H 5 HOH A 42 406 43 HOH HOH . H 5 HOH A 43 407 44 HOH HOH . H 5 HOH A 44 408 45 HOH HOH . H 5 HOH A 45 409 46 HOH HOH . H 5 HOH A 46 410 47 HOH HOH . H 5 HOH A 47 411 49 HOH HOH . H 5 HOH A 48 412 51 HOH HOH . H 5 HOH A 49 413 52 HOH HOH . H 5 HOH A 50 414 53 HOH HOH . H 5 HOH A 51 415 54 HOH HOH . H 5 HOH A 52 416 56 HOH HOH . H 5 HOH A 53 417 57 HOH HOH . H 5 HOH A 54 418 58 HOH HOH . H 5 HOH A 55 419 59 HOH HOH . H 5 HOH A 56 420 60 HOH HOH . H 5 HOH A 57 421 61 HOH HOH . H 5 HOH A 58 422 62 HOH HOH . H 5 HOH A 59 423 63 HOH HOH . H 5 HOH A 60 424 64 HOH HOH . H 5 HOH A 61 425 65 HOH HOH . H 5 HOH A 62 426 66 HOH HOH . H 5 HOH A 63 427 67 HOH HOH . H 5 HOH A 64 428 68 HOH HOH . H 5 HOH A 65 429 69 HOH HOH . H 5 HOH A 66 430 70 HOH HOH . H 5 HOH A 67 431 71 HOH HOH . H 5 HOH A 68 432 72 HOH HOH . H 5 HOH A 69 433 73 HOH HOH . H 5 HOH A 70 434 76 HOH HOH . H 5 HOH A 71 435 77 HOH HOH . H 5 HOH A 72 436 78 HOH HOH . H 5 HOH A 73 437 80 HOH HOH . H 5 HOH A 74 438 81 HOH HOH . H 5 HOH A 75 439 82 HOH HOH . H 5 HOH A 76 440 83 HOH HOH . H 5 HOH A 77 441 84 HOH HOH . H 5 HOH A 78 442 86 HOH HOH . H 5 HOH A 79 443 87 HOH HOH . H 5 HOH A 80 444 88 HOH HOH . H 5 HOH A 81 445 89 HOH HOH . H 5 HOH A 82 446 91 HOH HOH . H 5 HOH A 83 447 95 HOH HOH . H 5 HOH A 84 448 97 HOH HOH . H 5 HOH A 85 449 98 HOH HOH . H 5 HOH A 86 450 100 HOH HOH . H 5 HOH A 87 451 101 HOH HOH . H 5 HOH A 88 452 102 HOH HOH . H 5 HOH A 89 453 103 HOH HOH . H 5 HOH A 90 454 104 HOH HOH . H 5 HOH A 91 455 106 HOH HOH . H 5 HOH A 92 456 108 HOH HOH . H 5 HOH A 93 457 109 HOH HOH . H 5 HOH A 94 458 110 HOH HOH . H 5 HOH A 95 459 116 HOH HOH . H 5 HOH A 96 460 117 HOH HOH . H 5 HOH A 97 461 119 HOH HOH . H 5 HOH A 98 462 121 HOH HOH . H 5 HOH A 99 463 122 HOH HOH . H 5 HOH A 100 464 125 HOH HOH . H 5 HOH A 101 465 128 HOH HOH . H 5 HOH A 102 466 131 HOH HOH . H 5 HOH A 103 467 133 HOH HOH . H 5 HOH A 104 468 134 HOH HOH . H 5 HOH A 105 469 135 HOH HOH . H 5 HOH A 106 470 137 HOH HOH . H 5 HOH A 107 471 140 HOH HOH . H 5 HOH A 108 472 141 HOH HOH . H 5 HOH A 109 473 142 HOH HOH . H 5 HOH A 110 474 143 HOH HOH . H 5 HOH A 111 475 144 HOH HOH . H 5 HOH A 112 476 145 HOH HOH . H 5 HOH A 113 477 146 HOH HOH . H 5 HOH A 114 478 147 HOH HOH . H 5 HOH A 115 479 149 HOH HOH . H 5 HOH A 116 480 150 HOH HOH . H 5 HOH A 117 481 152 HOH HOH . H 5 HOH A 118 482 153 HOH HOH . H 5 HOH A 119 483 154 HOH HOH . H 5 HOH A 120 484 155 HOH HOH . H 5 HOH A 121 485 156 HOH HOH . H 5 HOH A 122 486 159 HOH HOH . H 5 HOH A 123 487 160 HOH HOH . H 5 HOH A 124 488 162 HOH HOH . H 5 HOH A 125 489 170 HOH HOH . H 5 HOH A 126 490 171 HOH HOH . H 5 HOH A 127 491 172 HOH HOH . H 5 HOH A 128 492 175 HOH HOH . H 5 HOH A 129 493 176 HOH HOH . H 5 HOH A 130 494 177 HOH HOH . H 5 HOH A 131 495 179 HOH HOH . H 5 HOH A 132 496 180 HOH HOH . H 5 HOH A 133 497 182 HOH HOH . H 5 HOH A 134 498 183 HOH HOH . H 5 HOH A 135 499 187 HOH HOH . H 5 HOH A 136 500 188 HOH HOH . H 5 HOH A 137 501 189 HOH HOH . H 5 HOH A 138 502 190 HOH HOH . H 5 HOH A 139 503 191 HOH HOH . H 5 HOH A 140 504 192 HOH HOH . H 5 HOH A 141 505 193 HOH HOH . H 5 HOH A 142 506 194 HOH HOH . H 5 HOH A 143 507 195 HOH HOH . H 5 HOH A 144 508 196 HOH HOH . H 5 HOH A 145 509 197 HOH HOH . H 5 HOH A 146 510 198 HOH HOH . H 5 HOH A 147 511 200 HOH HOH . H 5 HOH A 148 512 202 HOH HOH . H 5 HOH A 149 513 203 HOH HOH . H 5 HOH A 150 514 205 HOH HOH . H 5 HOH A 151 515 207 HOH HOH . H 5 HOH A 152 516 210 HOH HOH . H 5 HOH A 153 517 211 HOH HOH . H 5 HOH A 154 518 213 HOH HOH . H 5 HOH A 155 519 215 HOH HOH . H 5 HOH A 156 520 216 HOH HOH . H 5 HOH A 157 521 219 HOH HOH . H 5 HOH A 158 522 220 HOH HOH . H 5 HOH A 159 523 221 HOH HOH . H 5 HOH A 160 524 223 HOH HOH . H 5 HOH A 161 525 224 HOH HOH . H 5 HOH A 162 526 227 HOH HOH . H 5 HOH A 163 527 228 HOH HOH . H 5 HOH A 164 528 230 HOH HOH . H 5 HOH A 165 529 231 HOH HOH . H 5 HOH A 166 530 232 HOH HOH . H 5 HOH A 167 531 233 HOH HOH . H 5 HOH A 168 532 234 HOH HOH . H 5 HOH A 169 533 235 HOH HOH . H 5 HOH A 170 534 237 HOH HOH . H 5 HOH A 171 535 238 HOH HOH . H 5 HOH A 172 536 239 HOH HOH . H 5 HOH A 173 537 240 HOH HOH . H 5 HOH A 174 538 241 HOH HOH . H 5 HOH A 175 539 242 HOH HOH . H 5 HOH A 176 540 243 HOH HOH . H 5 HOH A 177 541 244 HOH HOH . H 5 HOH A 178 542 246 HOH HOH . H 5 HOH A 179 543 247 HOH HOH . H 5 HOH A 180 544 248 HOH HOH . H 5 HOH A 181 545 249 HOH HOH . H 5 HOH A 182 546 250 HOH HOH . H 5 HOH A 183 547 251 HOH HOH . H 5 HOH A 184 548 252 HOH HOH . H 5 HOH A 185 549 253 HOH HOH . H 5 HOH A 186 550 254 HOH HOH . H 5 HOH A 187 551 255 HOH HOH . H 5 HOH A 188 552 256 HOH HOH . H 5 HOH A 189 553 257 HOH HOH . H 5 HOH A 190 554 258 HOH HOH . H 5 HOH A 191 555 259 HOH HOH . H 5 HOH A 192 556 260 HOH HOH . H 5 HOH A 193 557 261 HOH HOH . H 5 HOH A 194 558 265 HOH HOH . H 5 HOH A 195 559 266 HOH HOH . H 5 HOH A 196 560 268 HOH HOH . H 5 HOH A 197 561 270 HOH HOH . H 5 HOH A 198 562 271 HOH HOH . H 5 HOH A 199 563 272 HOH HOH . H 5 HOH A 200 564 273 HOH HOH . H 5 HOH A 201 565 274 HOH HOH . H 5 HOH A 202 566 275 HOH HOH . H 5 HOH A 203 567 276 HOH HOH . H 5 HOH A 204 568 277 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 4 56.182 -13.263 22.863 1 95.31 ? C1 GOL 363 A 1 HETATM 2 O O1 GOL . . . F 4 55.922 -11.88 22.723 1 77.26 ? O1 GOL 363 A 1 HETATM 3 C C2 GOL . . . F 4 56.964 -13.791 21.662 1 92.24 ? C2 GOL 363 A 1 HETATM 4 O O2 GOL . . . F 4 58.053 -14.574 22.099 1 100.95 ? O2 GOL 363 A 1 HETATM 5 C C3 GOL . . . F 4 56.049 -14.647 20.795 1 89.36 ? C3 GOL 363 A 1 HETATM 6 O O3 GOL . . . F 4 55.432 -13.818 19.833 1 72.85 ? O3 GOL 363 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #