data_3Q33 # _model_server_result.job_id 0CfEEMbJtWB-924EdEzmjA _model_server_result.datetime_utc '2025-03-05 04:25:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3q33 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 3Q33 # _exptl.entry_id 3Q33 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 809.571 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETYL COENZYME *A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3Q33 _cell.length_a 97.543 _cell.length_b 119.57 _cell.length_c 80.566 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3Q33 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PRO 291 A PRO 289 1_555 A N ALY 292 A ALY 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C ALY 292 A ALY 290 1_555 A N ALA 293 A ALA 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'C23 H38 N7 O17 P3 S' _chem_comp.formula_weight 809.571 _chem_comp.id ACO _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETYL COENZYME *A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A ACO sing 1 n y N1A C6A ACO doub 2 n y C2A N3A ACO doub 3 n y C2A H2A ACO sing 4 n n N3A C4A ACO sing 5 n y C4A C5A ACO doub 6 n y C4A N9A ACO sing 7 n y C5A C6A ACO sing 8 n y C5A N7A ACO sing 9 n y C6A N6A ACO sing 10 n n N6A H61A ACO sing 11 n n N6A H62A ACO sing 12 n n N7A C8A ACO doub 13 n y C8A N9A ACO sing 14 n y C8A H8A ACO sing 15 n n N9A C1B ACO sing 16 n n C1B C2B ACO sing 17 n n C1B O4B ACO sing 18 n n C1B H1B ACO sing 19 n n C2B O2B ACO sing 20 n n C2B C3B ACO sing 21 n n C2B H2B ACO sing 22 n n O2B HO2A ACO sing 23 n n C3B O3B ACO sing 24 n n C3B C4B ACO sing 25 n n C3B H3B ACO sing 26 n n O3B P3B ACO sing 27 n n P3B O7A ACO doub 28 n n P3B O8A ACO sing 29 n n P3B O9A ACO sing 30 n n O8A HOA8 ACO sing 31 n n O9A HOA9 ACO sing 32 n n C4B O4B ACO sing 33 n n C4B C5B ACO sing 34 n n C4B H4B ACO sing 35 n n C5B O5B ACO sing 36 n n C5B H51A ACO sing 37 n n C5B H52A ACO sing 38 n n O5B P1A ACO sing 39 n n P1A O1A ACO doub 40 n n P1A O2A ACO sing 41 n n P1A O3A ACO sing 42 n n O2A HOA2 ACO sing 43 n n O3A P2A ACO sing 44 n n P2A O4A ACO doub 45 n n P2A O5A ACO sing 46 n n P2A O6A ACO sing 47 n n O5A HOA5 ACO sing 48 n n O6A CCP ACO sing 49 n n CBP CCP ACO sing 50 n n CBP CDP ACO sing 51 n n CBP CEP ACO sing 52 n n CBP CAP ACO sing 53 n n CCP H121 ACO sing 54 n n CCP H122 ACO sing 55 n n CDP H131 ACO sing 56 n n CDP H132 ACO sing 57 n n CDP H133 ACO sing 58 n n CEP H141 ACO sing 59 n n CEP H142 ACO sing 60 n n CEP H143 ACO sing 61 n n CAP OAP ACO sing 62 n n CAP C9P ACO sing 63 n n CAP H10 ACO sing 64 n n OAP HO1 ACO sing 65 n n C9P O9P ACO doub 66 n n C9P N8P ACO sing 67 n n N8P C7P ACO sing 68 n n N8P HN8 ACO sing 69 n n C7P C6P ACO sing 70 n n C7P H71 ACO sing 71 n n C7P H72 ACO sing 72 n n C6P C5P ACO sing 73 n n C6P H61 ACO sing 74 n n C6P H62 ACO sing 75 n n C5P O5P ACO doub 76 n n C5P N4P ACO sing 77 n n N4P C3P ACO sing 78 n n N4P HN4 ACO sing 79 n n C3P C2P ACO sing 80 n n C3P H31 ACO sing 81 n n C3P H32 ACO sing 82 n n C2P S1P ACO sing 83 n n C2P H21 ACO sing 84 n n C2P H22 ACO sing 85 n n S1P C ACO sing 86 n n C O ACO doub 87 n n C CH3 ACO sing 88 n n CH3 HH31 ACO sing 89 n n CH3 HH32 ACO sing 90 n n CH3 HH33 ACO sing 91 n n # _atom_sites.entry_id 3Q33 _atom_sites.fract_transf_matrix[1][1] 0.010252 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008363 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012412 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ACO A 1 501 999 ACO ACO . E 5 EDO A 1 502 437 EDO EDO . F 6 HOH A 1 601 1 HOH HOH . F 6 HOH A 2 602 2 HOH HOH . F 6 HOH A 3 603 3 HOH HOH . F 6 HOH A 4 604 4 HOH HOH . F 6 HOH A 5 605 5 HOH HOH . F 6 HOH A 6 606 6 HOH HOH . F 6 HOH A 7 607 7 HOH HOH . F 6 HOH A 8 608 8 HOH HOH . F 6 HOH A 9 609 9 HOH HOH . F 6 HOH A 10 610 10 HOH HOH . F 6 HOH A 11 611 11 HOH HOH . F 6 HOH A 12 612 12 HOH HOH . F 6 HOH A 13 613 13 HOH HOH . F 6 HOH A 14 614 23 HOH HOH . G 6 HOH B 1 301 14 HOH HOH . G 6 HOH B 2 302 15 HOH HOH . G 6 HOH B 3 303 16 HOH HOH . G 6 HOH B 4 304 17 HOH HOH . G 6 HOH B 5 305 18 HOH HOH . G 6 HOH B 6 306 19 HOH HOH . G 6 HOH B 7 307 20 HOH HOH . G 6 HOH B 8 308 21 HOH HOH . G 6 HOH B 9 309 22 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A ACO . . . D 4 -19.153 -5.768 -11.083 1 120.18 ? N1A ACO 501 A 1 HETATM 2 C C2A ACO . . . D 4 -18.653 -5.225 -12.204 1 111.76 ? C2A ACO 501 A 1 HETATM 3 N N3A ACO . . . D 4 -19.083 -4.072 -12.711 1 107.71 ? N3A ACO 501 A 1 HETATM 4 C C4A ACO . . . D 4 -20.059 -3.374 -12.12 1 104.89 ? C4A ACO 501 A 1 HETATM 5 C C5A ACO . . . D 4 -20.662 -3.895 -10.887 1 108.27 ? C5A ACO 501 A 1 HETATM 6 C C6A ACO . . . D 4 -20.142 -5.177 -10.375 1 119.52 ? C6A ACO 501 A 1 HETATM 7 N N6A ACO . . . D 4 -20.613 -5.764 -9.25 1 117.18 ? N6A ACO 501 A 1 HETATM 8 N N7A ACO . . . D 4 -21.581 -3.012 -10.545 1 98.99 ? N7A ACO 501 A 1 HETATM 9 C C8A ACO . . . D 4 -21.566 -2 -11.482 1 97.39 ? C8A ACO 501 A 1 HETATM 10 N N9A ACO . . . D 4 -20.642 -2.229 -12.429 1 100.77 ? N9A ACO 501 A 1 HETATM 11 C C1B ACO . . . D 4 -20.24 -1.434 -13.629 1 93.19 ? C1B ACO 501 A 1 HETATM 12 C C2B ACO . . . D 4 -21.233 -0.36 -14.108 1 100.28 ? C2B ACO 501 A 1 HETATM 13 O O2B ACO . . . D 4 -22.166 -0.799 -15.107 1 103.51 ? O2B ACO 501 A 1 HETATM 14 C C3B ACO . . . D 4 -20.337 0.622 -14.799 1 103.85 ? C3B ACO 501 A 1 HETATM 15 O O3B ACO . . . D 4 -19.923 0.194 -16.099 1 96.95 ? O3B ACO 501 A 1 HETATM 16 P P3B ACO . . . D 4 -20.35 0.991 -17.41 1 105.75 ? P3B ACO 501 A 1 HETATM 17 O O7A ACO . . . D 4 -21.854 1.218 -17.316 1 86.87 ? O7A ACO 501 A 1 HETATM 18 O O8A ACO . . . D 4 -19.583 2.295 -17.398 1 101.78 ? O8A ACO 501 A 1 HETATM 19 O O9A ACO . . . D 4 -19.882 -0.008 -18.446 1 121.41 ? O9A ACO 501 A 1 HETATM 20 C C4B ACO . . . D 4 -19.169 0.625 -13.832 1 96.3 ? C4B ACO 501 A 1 HETATM 21 O O4B ACO . . . D 4 -19.033 -0.717 -13.357 1 84.98 ? O4B ACO 501 A 1 HETATM 22 C C5B ACO . . . D 4 -19.365 1.666 -12.745 1 93.35 ? C5B ACO 501 A 1 HETATM 23 O O5B ACO . . . D 4 -20.746 1.862 -12.47 1 93.89 ? O5B ACO 501 A 1 HETATM 24 P P1A ACO . . . D 4 -21.155 2.695 -11.193 1 81.53 ? P1A ACO 501 A 1 HETATM 25 O O1A ACO . . . D 4 -21.316 4.116 -11.743 1 61.21 ? O1A ACO 501 A 1 HETATM 26 O O2A ACO . . . D 4 -22.294 2.006 -10.457 1 78.05 ? O2A ACO 501 A 1 HETATM 27 O O3A ACO . . . D 4 -19.818 2.392 -10.36 1 50.01 ? O3A ACO 501 A 1 HETATM 28 P P2A ACO . . . D 4 -19.451 1.413 -9.161 1 75.88 ? P2A ACO 501 A 1 HETATM 29 O O4A ACO . . . D 4 -18.396 0.512 -9.734 1 75.51 ? O4A ACO 501 A 1 HETATM 30 O O5A ACO . . . D 4 -20.683 0.836 -8.539 1 71.46 ? O5A ACO 501 A 1 HETATM 31 O O6A ACO . . . D 4 -18.672 2.169 -7.989 1 66.55 ? O6A ACO 501 A 1 HETATM 32 C CBP ACO . . . D 4 -16.716 3.32 -7.008 1 58.47 ? CBP ACO 501 A 1 HETATM 33 C CCP ACO . . . D 4 -17.601 3.089 -8.243 1 62.87 ? CCP ACO 501 A 1 HETATM 34 C CDP ACO . . . D 4 -17.363 4.341 -6.074 1 51.22 ? CDP ACO 501 A 1 HETATM 35 C CEP ACO . . . D 4 -15.346 3.842 -7.413 1 53.1 ? CEP ACO 501 A 1 HETATM 36 C CAP ACO . . . D 4 -16.548 1.964 -6.33 1 60.36 ? CAP ACO 501 A 1 HETATM 37 O OAP ACO . . . D 4 -16.073 1.101 -7.362 1 67 ? OAP ACO 501 A 1 HETATM 38 C C9P ACO . . . D 4 -15.67 1.877 -5.076 1 61.13 ? C9P ACO 501 A 1 HETATM 39 O O9P ACO . . . D 4 -16.26 1.628 -4.017 1 64.71 ? O9P ACO 501 A 1 HETATM 40 N N8P ACO . . . D 4 -14.323 2.043 -5.087 1 59.57 ? N8P ACO 501 A 1 HETATM 41 C C7P ACO . . . D 4 -13.559 1.918 -3.855 1 47.56 ? C7P ACO 501 A 1 HETATM 42 C C6P ACO . . . D 4 -13.166 3.183 -3.13 1 51.84 ? C6P ACO 501 A 1 HETATM 43 C C5P ACO . . . D 4 -12.347 4.105 -4.039 1 62.67 ? C5P ACO 501 A 1 HETATM 44 O O5P ACO . . . D 4 -11.306 3.72 -4.579 1 79.7 ? O5P ACO 501 A 1 HETATM 45 N N4P ACO . . . D 4 -12.862 5.336 -4.182 1 58.84 ? N4P ACO 501 A 1 HETATM 46 C C3P ACO . . . D 4 -12.335 6.409 -4.984 1 64.43 ? C3P ACO 501 A 1 HETATM 47 C C2P ACO . . . D 4 -12.403 7.637 -4.092 1 72.92 ? C2P ACO 501 A 1 HETATM 48 S S1P ACO . . . D 4 -11.459 9.013 -4.673 1 121.97 ? S1P ACO 501 A 1 HETATM 49 C C ACO . . . D 4 -12.099 10.547 -4.725 1 79.77 ? C ACO 501 A 1 HETATM 50 O O ACO . . . D 4 -13.209 10.77 -4.276 1 76.36 ? O ACO 501 A 1 HETATM 51 C CH3 ACO . . . D 4 -11.231 11.566 -5.358 1 71.55 ? CH3 ACO 501 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 51 #