data_3Q35 # _model_server_result.job_id EYC6HJ3D3uJaysXlLxIYfQ _model_server_result.datetime_utc '2024-10-10 13:31:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3q35 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":999}' # _entry.id 3Q35 # _exptl.entry_id 3Q35 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 809.571 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETYL COENZYME *A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3Q35 _cell.length_a 98.085 _cell.length_b 119.001 _cell.length_c 80.292 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3Q35 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PRO 291 A PRO 289 1_555 A N ALY 292 A ALY 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale2 A C ALY 292 A ALY 290 1_555 A N ALA 293 A ALA 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? # _chem_comp.formula 'C23 H38 N7 O17 P3 S' _chem_comp.formula_weight 809.571 _chem_comp.id ACO _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETYL COENZYME *A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A ACO sing 1 n y N1A C6A ACO doub 2 n y C2A N3A ACO doub 3 n y C2A H2A ACO sing 4 n n N3A C4A ACO sing 5 n y C4A C5A ACO doub 6 n y C4A N9A ACO sing 7 n y C5A C6A ACO sing 8 n y C5A N7A ACO sing 9 n y C6A N6A ACO sing 10 n n N6A H61A ACO sing 11 n n N6A H62A ACO sing 12 n n N7A C8A ACO doub 13 n y C8A N9A ACO sing 14 n y C8A H8A ACO sing 15 n n N9A C1B ACO sing 16 n n C1B C2B ACO sing 17 n n C1B O4B ACO sing 18 n n C1B H1B ACO sing 19 n n C2B O2B ACO sing 20 n n C2B C3B ACO sing 21 n n C2B H2B ACO sing 22 n n O2B HO2A ACO sing 23 n n C3B O3B ACO sing 24 n n C3B C4B ACO sing 25 n n C3B H3B ACO sing 26 n n O3B P3B ACO sing 27 n n P3B O7A ACO doub 28 n n P3B O8A ACO sing 29 n n P3B O9A ACO sing 30 n n O8A HOA8 ACO sing 31 n n O9A HOA9 ACO sing 32 n n C4B O4B ACO sing 33 n n C4B C5B ACO sing 34 n n C4B H4B ACO sing 35 n n C5B O5B ACO sing 36 n n C5B H51A ACO sing 37 n n C5B H52A ACO sing 38 n n O5B P1A ACO sing 39 n n P1A O1A ACO doub 40 n n P1A O2A ACO sing 41 n n P1A O3A ACO sing 42 n n O2A HOA2 ACO sing 43 n n O3A P2A ACO sing 44 n n P2A O4A ACO doub 45 n n P2A O5A ACO sing 46 n n P2A O6A ACO sing 47 n n O5A HOA5 ACO sing 48 n n O6A CCP ACO sing 49 n n CBP CCP ACO sing 50 n n CBP CDP ACO sing 51 n n CBP CEP ACO sing 52 n n CBP CAP ACO sing 53 n n CCP H121 ACO sing 54 n n CCP H122 ACO sing 55 n n CDP H131 ACO sing 56 n n CDP H132 ACO sing 57 n n CDP H133 ACO sing 58 n n CEP H141 ACO sing 59 n n CEP H142 ACO sing 60 n n CEP H143 ACO sing 61 n n CAP OAP ACO sing 62 n n CAP C9P ACO sing 63 n n CAP H10 ACO sing 64 n n OAP HO1 ACO sing 65 n n C9P O9P ACO doub 66 n n C9P N8P ACO sing 67 n n N8P C7P ACO sing 68 n n N8P HN8 ACO sing 69 n n C7P C6P ACO sing 70 n n C7P H71 ACO sing 71 n n C7P H72 ACO sing 72 n n C6P C5P ACO sing 73 n n C6P H61 ACO sing 74 n n C6P H62 ACO sing 75 n n C5P O5P ACO doub 76 n n C5P N4P ACO sing 77 n n N4P C3P ACO sing 78 n n N4P HN4 ACO sing 79 n n C3P C2P ACO sing 80 n n C3P H31 ACO sing 81 n n C3P H32 ACO sing 82 n n C2P S1P ACO sing 83 n n C2P H21 ACO sing 84 n n C2P H22 ACO sing 85 n n S1P C ACO sing 86 n n C O ACO doub 87 n n C CH3 ACO sing 88 n n CH3 HH31 ACO sing 89 n n CH3 HH32 ACO sing 90 n n CH3 HH33 ACO sing 91 n n # _atom_sites.entry_id 3Q35 _atom_sites.fract_transf_matrix[1][1] 0.010195 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008403 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012455 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ACO A 1 999 999 ACO ACO . D 4 EDO A 1 437 437 EDO EDO . E 5 HOH A 1 438 1 HOH HOH . E 5 HOH A 2 439 2 HOH HOH . E 5 HOH A 3 440 3 HOH HOH . E 5 HOH A 4 441 4 HOH HOH . E 5 HOH A 5 442 5 HOH HOH . E 5 HOH A 6 443 6 HOH HOH . E 5 HOH A 7 444 7 HOH HOH . E 5 HOH A 8 445 10 HOH HOH . E 5 HOH A 9 446 11 HOH HOH . F 5 HOH B 1 233 8 HOH HOH . F 5 HOH B 2 234 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A ACO . . . C 3 -19.219 -5.601 -11.061 1 105.97 ? N1A ACO 999 A 1 HETATM 2 C C2A ACO . . . C 3 -18.773 -5.11 -12.236 1 98.24 ? C2A ACO 999 A 1 HETATM 3 N N3A ACO . . . C 3 -19.173 -3.931 -12.709 1 95.76 ? N3A ACO 999 A 1 HETATM 4 C C4A ACO . . . C 3 -20.048 -3.184 -12.019 1 103.3 ? C4A ACO 999 A 1 HETATM 5 C C5A ACO . . . C 3 -20.584 -3.644 -10.73 1 102.93 ? C5A ACO 999 A 1 HETATM 6 C C6A ACO . . . C 3 -20.106 -4.947 -10.266 1 105.5 ? C6A ACO 999 A 1 HETATM 7 N N6A ACO . . . C 3 -20.524 -5.474 -9.102 1 105.86 ? N6A ACO 999 A 1 HETATM 8 N N7A ACO . . . C 3 -21.407 -2.69 -10.319 1 103.5 ? N7A ACO 999 A 1 HETATM 9 C C8A ACO . . . C 3 -21.407 -1.68 -11.266 1 107.18 ? C8A ACO 999 A 1 HETATM 10 N N9A ACO . . . C 3 -20.586 -2.015 -12.28 1 110.4 ? N9A ACO 999 A 1 HETATM 11 C C1B ACO . . . C 3 -20.175 -1.322 -13.517 1 111.45 ? C1B ACO 999 A 1 HETATM 12 C C2B ACO . . . C 3 -21.151 -0.334 -14.166 1 112.49 ? C2B ACO 999 A 1 HETATM 13 O O2B ACO . . . C 3 -21.843 -0.907 -15.281 1 107.95 ? O2B ACO 999 A 1 HETATM 14 C C3B ACO . . . C 3 -20.196 0.625 -14.783 1 119.46 ? C3B ACO 999 A 1 HETATM 15 O O3B ACO . . . C 3 -19.666 0.075 -15.979 1 123.84 ? O3B ACO 999 A 1 HETATM 16 P P3B ACO . . . C 3 -20.027 0.757 -17.378 1 116.77 ? P3B ACO 999 A 1 HETATM 17 O O7A ACO . . . C 3 -21.545 0.911 -17.412 1 96.12 ? O7A ACO 999 A 1 HETATM 18 O O8A ACO . . . C 3 -19.31 2.094 -17.34 1 110.97 ? O8A ACO 999 A 1 HETATM 19 O O9A ACO . . . C 3 -19.43 -0.288 -18.295 1 118.51 ? O9A ACO 999 A 1 HETATM 20 C C4B ACO . . . C 3 -19.09 0.714 -13.75 1 111 ? C4B ACO 999 A 1 HETATM 21 O O4B ACO . . . C 3 -19.03 -0.564 -13.129 1 110.22 ? O4B ACO 999 A 1 HETATM 22 C C5B ACO . . . C 3 -19.306 1.865 -12.788 1 95.96 ? C5B ACO 999 A 1 HETATM 23 O O5B ACO . . . C 3 -20.643 1.861 -12.292 1 91.22 ? O5B ACO 999 A 1 HETATM 24 P P1A ACO . . . C 3 -20.888 2.648 -10.954 1 71.55 ? P1A ACO 999 A 1 HETATM 25 O O1A ACO . . . C 3 -21.089 4.119 -11.327 1 67.6 ? O1A ACO 999 A 1 HETATM 26 O O2A ACO . . . C 3 -21.922 1.9 -10.13 1 66.71 ? O2A ACO 999 A 1 HETATM 27 O O3A ACO . . . C 3 -19.464 2.292 -10.327 1 47.67 ? O3A ACO 999 A 1 HETATM 28 P P2A ACO . . . C 3 -19.217 1.453 -9.012 1 60.12 ? P2A ACO 999 A 1 HETATM 29 O O4A ACO . . . C 3 -18.163 0.436 -9.312 1 57.71 ? O4A ACO 999 A 1 HETATM 30 O O5A ACO . . . C 3 -20.54 1.023 -8.478 1 59.17 ? O5A ACO 999 A 1 HETATM 31 O O6A ACO . . . C 3 -18.555 2.403 -7.926 1 56.82 ? O6A ACO 999 A 1 HETATM 32 C CBP ACO . . . C 3 -16.643 3.459 -6.861 1 54.43 ? CBP ACO 999 A 1 HETATM 33 C CCP ACO . . . C 3 -17.345 3.104 -8.179 1 53.88 ? CCP ACO 999 A 1 HETATM 34 C CDP ACO . . . C 3 -17.521 4.422 -6.07 1 60.85 ? CDP ACO 999 A 1 HETATM 35 C CEP ACO . . . C 3 -15.282 4.098 -7.115 1 61.06 ? CEP ACO 999 A 1 HETATM 36 C CAP ACO . . . C 3 -16.447 2.113 -6.172 1 47.3 ? CAP ACO 999 A 1 HETATM 37 O OAP ACO . . . C 3 -16.012 1.303 -7.262 1 39.87 ? OAP ACO 999 A 1 HETATM 38 C C9P ACO . . . C 3 -15.512 2.008 -4.95 1 57.73 ? C9P ACO 999 A 1 HETATM 39 O O9P ACO . . . C 3 -16.022 1.759 -3.849 1 67.88 ? O9P ACO 999 A 1 HETATM 40 N N8P ACO . . . C 3 -14.175 2.161 -5.036 1 57.66 ? N8P ACO 999 A 1 HETATM 41 C C7P ACO . . . C 3 -13.405 2.037 -3.827 1 65.03 ? C7P ACO 999 A 1 HETATM 42 C C6P ACO . . . C 3 -13.395 3.288 -2.968 1 69.52 ? C6P ACO 999 A 1 HETATM 43 C C5P ACO . . . C 3 -12.481 4.288 -3.677 1 68.98 ? C5P ACO 999 A 1 HETATM 44 O O5P ACO . . . C 3 -11.526 3.868 -4.332 1 67.09 ? O5P ACO 999 A 1 HETATM 45 N N4P ACO . . . C 3 -12.779 5.594 -3.561 1 69.33 ? N4P ACO 999 A 1 HETATM 46 C C3P ACO . . . C 3 -12.023 6.642 -4.185 1 65.6 ? C3P ACO 999 A 1 HETATM 47 C C2P ACO . . . C 3 -12.628 7.907 -3.663 1 60.33 ? C2P ACO 999 A 1 HETATM 48 S S1P ACO . . . C 3 -11.641 9.263 -4.158 1 121.14 ? S1P ACO 999 A 1 HETATM 49 C C ACO . . . C 3 -12.247 10.777 -4.54 1 56.65 ? C ACO 999 A 1 HETATM 50 O O ACO . . . C 3 -13.408 11.089 -4.339 1 51.13 ? O ACO 999 A 1 HETATM 51 C CH3 ACO . . . C 3 -11.249 11.679 -5.154 1 46.21 ? CH3 ACO 999 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 51 #