data_3Q3B # _model_server_result.job_id bKiaSqCgPOoqJVihitzw4w _model_server_result.datetime_utc '2025-06-20 17:10:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3q3b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":421}' # _entry.id 3Q3B # _exptl.entry_id 3Q3B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 278.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-(4-hydroxy-3-methylphenyl)-6-phenylpyrimidin-2(5H)-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3Q3B _cell.length_a 83.453 _cell.length_b 85.647 _cell.length_c 178.8 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3Q3B _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C17 H14 N2 O2' _chem_comp.formula_weight 278.305 _chem_comp.id 55E _chem_comp.mon_nstd_flag . _chem_comp.name 4-(4-hydroxy-3-methylphenyl)-6-phenylpyrimidin-2(5H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3 C2 55E doub 1 n n N4 C2 55E sing 2 n n C2 N1 55E sing 3 n n N4 C5 55E doub 4 n n C6 C5 55E sing 5 n n C5 C7 55E sing 6 n n C15 C6 55E doub 7 n y C6 C21 55E sing 8 n y C19 C21 55E doub 9 n y C21 H21 55E sing 10 n n C17 C19 55E sing 11 n y C19 C20 55E sing 12 n n C20 H20 55E sing 13 n n C20 H20A 55E sing 14 n n C20 H20B 55E sing 15 n n C16 C17 55E doub 16 n y O18 C17 55E sing 17 n n O18 HO18 55E sing 18 n n C16 C15 55E sing 19 n y C16 H16 55E sing 20 n n C15 H15 55E sing 21 n n C7 C8 55E sing 22 n n C7 H7 55E sing 23 n n C7 H7A 55E sing 24 n n N1 C8 55E doub 25 n n C8 C9 55E sing 26 n n C9 C10 55E doub 27 n y C9 C14 55E sing 28 n y C14 C13 55E doub 29 n y C14 H14 55E sing 30 n n C13 C12 55E sing 31 n y C13 H13 55E sing 32 n n C11 C12 55E doub 33 n y C12 H12 55E sing 34 n n C10 C11 55E sing 35 n y C11 H11 55E sing 36 n n C10 H10 55E sing 37 n n # _atom_sites.entry_id 3Q3B _atom_sites.fract_transf_matrix[1][1] 0.011983 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011676 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005593 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 55E A 1 421 1 55E 55E . D 2 55E B 1 421 2 55E 55E . E 3 HOH A 1 502 502 HOH WAT . E 3 HOH A 2 506 506 HOH WAT . E 3 HOH A 3 508 508 HOH WAT . E 3 HOH A 4 509 509 HOH WAT . E 3 HOH A 5 512 512 HOH WAT . E 3 HOH A 6 515 515 HOH WAT . E 3 HOH A 7 517 517 HOH WAT . E 3 HOH A 8 519 519 HOH WAT . E 3 HOH A 9 522 522 HOH WAT . E 3 HOH A 10 523 523 HOH WAT . E 3 HOH A 11 524 524 HOH WAT . E 3 HOH A 12 535 535 HOH WAT . E 3 HOH A 13 538 538 HOH WAT . E 3 HOH A 14 540 540 HOH WAT . E 3 HOH A 15 541 541 HOH WAT . E 3 HOH A 16 543 543 HOH WAT . F 3 HOH B 1 501 501 HOH WAT . F 3 HOH B 2 503 503 HOH WAT . F 3 HOH B 3 504 504 HOH WAT . F 3 HOH B 4 505 505 HOH WAT . F 3 HOH B 5 507 507 HOH WAT . F 3 HOH B 6 510 510 HOH WAT . F 3 HOH B 7 511 511 HOH WAT . F 3 HOH B 8 513 513 HOH WAT . F 3 HOH B 9 516 516 HOH WAT . F 3 HOH B 10 518 518 HOH WAT . F 3 HOH B 11 520 520 HOH WAT . F 3 HOH B 12 525 525 HOH WAT . F 3 HOH B 13 526 526 HOH WAT . F 3 HOH B 14 529 529 HOH WAT . F 3 HOH B 15 530 530 HOH WAT . F 3 HOH B 16 531 531 HOH WAT . F 3 HOH B 17 537 537 HOH WAT . F 3 HOH B 18 542 542 HOH WAT . F 3 HOH B 19 544 544 HOH WAT . F 3 HOH B 20 545 545 HOH WAT . F 3 HOH B 21 546 546 HOH WAT . F 3 HOH B 22 547 547 HOH WAT . F 3 HOH B 23 548 548 HOH WAT . F 3 HOH B 24 549 549 HOH WAT . F 3 HOH B 25 560 560 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O3 55E . . . D 2 16.969 -14.586 10.129 1 45.36 ? O3 55E 421 B 1 HETATM 2 C C2 55E . . . D 2 18.025 -15.186 10.299 1 45.36 ? C2 55E 421 B 1 HETATM 3 N N4 55E . . . D 2 18.605 -16.094 9.28 1 45.36 ? N4 55E 421 B 1 HETATM 4 C C5 55E . . . D 2 19.748 -16.748 9.473 1 45.36 ? C5 55E 421 B 1 HETATM 5 C C6 55E . . . D 2 20.232 -17.69 8.368 1 45.36 ? C6 55E 421 B 1 HETATM 6 C C21 55E . . . D 2 21.433 -18.44 8.508 1 45.36 ? C21 55E 421 B 1 HETATM 7 C C19 55E . . . D 2 21.857 -19.322 7.496 1 45.36 ? C19 55E 421 B 1 HETATM 8 C C20 55E . . . D 2 23.149 -20.106 7.687 1 45.36 ? C20 55E 421 B 1 HETATM 9 C C17 55E . . . D 2 21.054 -19.459 6.327 1 45.36 ? C17 55E 421 B 1 HETATM 10 O O18 55E . . . D 2 21.392 -20.293 5.32 1 45.36 ? O18 55E 421 B 1 HETATM 11 C C16 55E . . . D 2 19.868 -18.716 6.188 1 45.36 ? C16 55E 421 B 1 HETATM 12 C C15 55E . . . D 2 19.459 -17.84 7.201 1 45.36 ? C15 55E 421 B 1 HETATM 13 C C7 55E . . . D 2 20.454 -16.606 10.657 1 45.36 ? C7 55E 421 B 1 HETATM 14 C C8 55E . . . D 2 20.001 -15.783 11.67 1 45.36 ? C8 55E 421 B 1 HETATM 15 N N1 55E . . . D 2 18.705 -15.036 11.466 1 45.36 ? N1 55E 421 B 1 HETATM 16 C C9 55E . . . D 2 20.733 -15.609 13.007 1 45.36 ? C9 55E 421 B 1 HETATM 17 C C14 55E . . . D 2 21.618 -16.634 13.507 1 45.36 ? C14 55E 421 B 1 HETATM 18 C C13 55E . . . D 2 22.269 -16.473 14.772 1 45.36 ? C13 55E 421 B 1 HETATM 19 C C12 55E . . . D 2 22.038 -15.292 15.536 1 45.36 ? C12 55E 421 B 1 HETATM 20 C C11 55E . . . D 2 21.164 -14.266 15.039 1 45.36 ? C11 55E 421 B 1 HETATM 21 C C10 55E . . . D 2 20.516 -14.425 13.786 1 45.36 ? C10 55E 421 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 362 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 21 #