data_3Q3C # _model_server_result.job_id GxGRuQt8KK_2TwrYdNkrhg _model_server_result.datetime_utc '2024-11-19 08:45:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3q3c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":299}' # _entry.id 3Q3C # _exptl.entry_id 3Q3C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3Q3C _cell.length_a 92.724 _cell.length_b 92.724 _cell.length_c 126.481 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3Q3C _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 46.362 80.30134 0 3 'crystal symmetry operation' 7_554 y,x,-z-1/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 -42.160333 4 'crystal symmetry operation' 10_664 -y+1,-x+1,-z-1/3 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 46.362 80.30134 -42.160333 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C HIS 12 A HIS 11 1_555 A N MSE 13 A MSE 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale2 A C MSE 13 A MSE 12 1_555 A N GLY 14 A GLY 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 A C PRO 16 A PRO 15 1_555 A N MSE 17 A MSE 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 A C MSE 17 A MSE 16 1_555 A N ALA 18 A ALA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale5 A C SER 64 A SER 63 1_555 A N MSE 65 A MSE 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale6 A C MSE 65 A MSE 64 1_555 A N LEU 66 A LEU 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale7 A C ALA 116 A ALA 115 1_555 A N MSE 117 A MSE 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale8 A C MSE 117 A MSE 116 1_555 A N LEU 118 A LEU 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale9 A C PHE 136 A PHE 135 1_555 A N MSE 137 A MSE 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale10 A C MSE 137 A MSE 136 1_555 A N VAL 138 A VAL 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale11 A C ALA 154 A ALA 153 1_555 A N MSE 155 A MSE 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale12 A C MSE 155 A MSE 154 1_555 A N GLY 156 A GLY 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale13 A C LEU 182 A LEU 181 1_555 A N MSE 183 A MSE 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale14 A C MSE 183 A MSE 182 1_555 A N ILE 184 A ILE 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale15 A C ALA 189 A ALA 188 1_555 A N MSE 190 A MSE 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale16 A C MSE 190 A MSE 189 1_555 A N ALA 191 A ALA 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale17 A C ILE 206 A ILE 205 1_555 A N MSE 207 A MSE 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale18 A C MSE 207 A MSE 206 1_555 A N ARG 208 A ARG 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale19 A C VAL 226 A VAL 225 1_555 A N MSE 227 A MSE 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale20 A C MSE 227 A MSE 226 1_555 A N GLU 228 A GLU 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale21 A C PHE 240 A PHE 239 1_555 A N MSE 241 A MSE 240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale22 A C MSE 241 A MSE 240 1_555 A N ALA 242 A ALA 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale23 A C LEU 244 A LEU 243 1_555 A N MSE 245 A MSE 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale24 A C MSE 245 A MSE 244 1_555 A N ALA 246 A ALA 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale25 A C PRO 264 A PRO 263 1_555 A N MSE 265 A MSE 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale26 A C MSE 265 A MSE 264 1_555 A N GLY 266 A GLY 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 237 n n PA O2A NAD sing 238 n n PA O5B NAD sing 239 n n PA O3 NAD sing 240 n n O2A HOA2 NAD sing 241 n n O5B C5B NAD sing 242 n n C5B C4B NAD sing 243 n n C5B H51A NAD sing 244 n n C5B H52A NAD sing 245 n n C4B O4B NAD sing 246 n n C4B C3B NAD sing 247 n n C4B H4B NAD sing 248 n n O4B C1B NAD sing 249 n n C3B O3B NAD sing 250 n n C3B C2B NAD sing 251 n n C3B H3B NAD sing 252 n n O3B HO3A NAD sing 253 n n C2B O2B NAD sing 254 n n C2B C1B NAD sing 255 n n C2B H2B NAD sing 256 n n O2B HO2A NAD sing 257 n n C1B N9A NAD sing 258 n n C1B H1B NAD sing 259 n n N9A C8A NAD sing 260 n y N9A C4A NAD sing 261 n y C8A N7A NAD doub 262 n y C8A H8A NAD sing 263 n n N7A C5A NAD sing 264 n y C5A C6A NAD sing 265 n y C5A C4A NAD doub 266 n y C6A N6A NAD sing 267 n n C6A N1A NAD doub 268 n y N6A H61A NAD sing 269 n n N6A H62A NAD sing 270 n n N1A C2A NAD sing 271 n y C2A N3A NAD doub 272 n y C2A H2A NAD sing 273 n n N3A C4A NAD sing 274 n y O3 PN NAD sing 275 n n PN O1N NAD doub 276 n n PN O2N NAD sing 277 n n PN O5D NAD sing 278 n n O5D C5D NAD sing 279 n n C5D C4D NAD sing 280 n n C5D H51N NAD sing 281 n n C5D H52N NAD sing 282 n n C4D O4D NAD sing 283 n n C4D C3D NAD sing 284 n n C4D H4D NAD sing 285 n n O4D C1D NAD sing 286 n n C3D O3D NAD sing 287 n n C3D C2D NAD sing 288 n n C3D H3D NAD sing 289 n n O3D HO3N NAD sing 290 n n C2D O2D NAD sing 291 n n C2D C1D NAD sing 292 n n C2D H2D NAD sing 293 n n O2D HO2N NAD sing 294 n n C1D N1N NAD sing 295 n n C1D H1D NAD sing 296 n n N1N C2N NAD sing 297 n y N1N C6N NAD doub 298 n y C2N C3N NAD doub 299 n y C2N H2N NAD sing 300 n n C3N C7N NAD sing 301 n n C3N C4N NAD sing 302 n y C7N O7N NAD doub 303 n n C7N N7N NAD sing 304 n n N7N H71N NAD sing 305 n n N7N H72N NAD sing 306 n n C4N C5N NAD doub 307 n y C4N H4N NAD sing 308 n n C5N C6N NAD sing 309 n y C5N H5N NAD sing 310 n n C6N H6N NAD sing 311 n n # _atom_sites.entry_id 3Q3C _atom_sites.fract_transf_matrix[1][1] 0.010785 _atom_sites.fract_transf_matrix[1][2] 0.006227 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012453 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007906 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAD A 1 299 1 NAD NAD . C 3 HOH A 1 300 4 HOH HOH . C 3 HOH A 2 301 5 HOH HOH . C 3 HOH A 3 302 6 HOH HOH . C 3 HOH A 4 303 7 HOH HOH . C 3 HOH A 5 304 8 HOH HOH . C 3 HOH A 6 305 10 HOH HOH . C 3 HOH A 7 306 11 HOH HOH . C 3 HOH A 8 307 13 HOH HOH . C 3 HOH A 9 308 14 HOH HOH . C 3 HOH A 10 309 15 HOH HOH . C 3 HOH A 11 310 17 HOH HOH . C 3 HOH A 12 311 18 HOH HOH . C 3 HOH A 13 312 24 HOH HOH . C 3 HOH A 14 313 25 HOH HOH . C 3 HOH A 15 314 27 HOH HOH . C 3 HOH A 16 315 28 HOH HOH . C 3 HOH A 17 316 29 HOH HOH . C 3 HOH A 18 317 30 HOH HOH . C 3 HOH A 19 318 31 HOH HOH . C 3 HOH A 20 319 32 HOH HOH . C 3 HOH A 21 320 1 HOH HOH . C 3 HOH A 22 321 2 HOH HOH . C 3 HOH A 23 322 3 HOH HOH . C 3 HOH A 24 323 4 HOH HOH . C 3 HOH A 25 324 5 HOH HOH . C 3 HOH A 26 325 6 HOH HOH . C 3 HOH A 27 326 7 HOH HOH . C 3 HOH A 28 327 8 HOH HOH . C 3 HOH A 29 328 9 HOH HOH . C 3 HOH A 30 329 10 HOH HOH . C 3 HOH A 31 330 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . B 2 -1.111 28.233 -5.878 1 72.17 ? PA NAD 299 A 1 HETATM 2 O O1A NAD . . . B 2 0.119 27.493 -5.497 1 73.94 ? O1A NAD 299 A 1 HETATM 3 O O2A NAD . . . B 2 -1.354 29.321 -4.902 1 77.22 ? O2A NAD 299 A 1 HETATM 4 O O5B NAD . . . B 2 -2.406 27.276 -5.913 1 105.19 ? O5B NAD 299 A 1 HETATM 5 C C5B NAD . . . B 2 -2.406 26.026 -6.562 1 105.32 ? C5B NAD 299 A 1 HETATM 6 C C4B NAD . . . B 2 -3.434 25.137 -5.875 1 104.68 ? C4B NAD 299 A 1 HETATM 7 O O4B NAD . . . B 2 -3.56 23.935 -6.605 1 106.25 ? O4B NAD 299 A 1 HETATM 8 C C3B NAD . . . B 2 -3.013 24.755 -4.458 1 104.37 ? C3B NAD 299 A 1 HETATM 9 O O3B NAD . . . B 2 -3.985 25.16 -3.512 1 100.49 ? O3B NAD 299 A 1 HETATM 10 C C2B NAD . . . B 2 -2.892 23.241 -4.479 1 108.72 ? C2B NAD 299 A 1 HETATM 11 O O2B NAD . . . B 2 -3.45 22.635 -3.335 1 112.39 ? O2B NAD 299 A 1 HETATM 12 C C1B NAD . . . B 2 -3.69 22.848 -5.706 1 107.74 ? C1B NAD 299 A 1 HETATM 13 N N9A NAD . . . B 2 -3.237 21.565 -6.287 1 106.31 ? N9A NAD 299 A 1 HETATM 14 C C8A NAD . . . B 2 -1.947 21.204 -6.591 1 103.17 ? C8A NAD 299 A 1 HETATM 15 N N7A NAD . . . B 2 -1.962 19.954 -7.107 1 102.38 ? N7A NAD 299 A 1 HETATM 16 C C5A NAD . . . B 2 -3.239 19.507 -7.133 1 102.55 ? C5A NAD 299 A 1 HETATM 17 C C6A NAD . . . B 2 -3.796 18.31 -7.558 1 101.95 ? C6A NAD 299 A 1 HETATM 18 N N6A NAD . . . B 2 -3.105 17.553 -8.408 1 104.48 ? N6A NAD 299 A 1 HETATM 19 N N1A NAD . . . B 2 -5.162 18.138 -7.462 1 101.16 ? N1A NAD 299 A 1 HETATM 20 C C2A NAD . . . B 2 -5.96 19.146 -6.956 1 99.47 ? C2A NAD 299 A 1 HETATM 21 N N3A NAD . . . B 2 -5.396 20.332 -6.532 1 99.02 ? N3A NAD 299 A 1 HETATM 22 C C4A NAD . . . B 2 -4.054 20.509 -6.62 1 103.52 ? C4A NAD 299 A 1 HETATM 23 O O3 NAD . . . B 2 -0.942 28.757 -7.39 1 194.88 ? O3 NAD 299 A 1 HETATM 24 P PN NAD . . . B 2 -1.661 30.118 -7.847 1 78 ? PN NAD 299 A 1 HETATM 25 O O1N NAD . . . B 2 -0.92 31.242 -7.213 1 72.19 ? O1N NAD 299 A 1 HETATM 26 O O2N NAD . . . B 2 -3.133 29.932 -7.606 1 64.27 ? O2N NAD 299 A 1 HETATM 27 O O5D NAD . . . B 2 -1.33 30.215 -9.432 1 78.73 ? O5D NAD 299 A 1 HETATM 28 C C5D NAD . . . B 2 -1.583 29.14 -10.313 1 77.36 ? C5D NAD 299 A 1 HETATM 29 C C4D NAD . . . B 2 -1.075 29.449 -11.722 1 74.61 ? C4D NAD 299 A 1 HETATM 30 O O4D NAD . . . B 2 -1.506 30.739 -12.105 1 78.44 ? O4D NAD 299 A 1 HETATM 31 C C3D NAD . . . B 2 0.439 29.425 -11.844 1 71.53 ? C3D NAD 299 A 1 HETATM 32 O O3D NAD . . . B 2 0.769 28.619 -12.969 1 63.78 ? O3D NAD 299 A 1 HETATM 33 C C2D NAD . . . B 2 0.814 30.907 -11.96 1 75.72 ? C2D NAD 299 A 1 HETATM 34 O O2D NAD . . . B 2 1.963 31.208 -12.739 1 75.66 ? O2D NAD 299 A 1 HETATM 35 C C1D NAD . . . B 2 -0.437 31.555 -12.535 1 76.26 ? C1D NAD 299 A 1 HETATM 36 N N1N NAD . . . B 2 -0.647 32.933 -12.044 1 74.91 ? N1N NAD 299 A 1 HETATM 37 C C2N NAD . . . B 2 -0.317 33.25 -10.752 1 78.14 ? C2N NAD 299 A 1 HETATM 38 C C3N NAD . . . B 2 -0.506 34.543 -10.261 1 79.61 ? C3N NAD 299 A 1 HETATM 39 C C7N NAD . . . B 2 -0.383 34.822 -8.779 1 78.95 ? C7N NAD 299 A 1 HETATM 40 O O7N NAD . . . B 2 -0.195 36.15 -8.35 1 79.24 ? O7N NAD 299 A 1 HETATM 41 N N7N NAD . . . B 2 -0.459 33.834 -7.884 1 78.68 ? N7N NAD 299 A 1 HETATM 42 C C4N NAD . . . B 2 -1.045 35.516 -11.111 1 76.71 ? C4N NAD 299 A 1 HETATM 43 C C5N NAD . . . B 2 -1.385 35.191 -12.423 1 73.75 ? C5N NAD 299 A 1 HETATM 44 C C6N NAD . . . B 2 -1.182 33.885 -12.876 1 75.87 ? C6N NAD 299 A 1 # _model_server_stats.io_time_ms 84 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 44 #