data_3Q3T # _model_server_result.job_id G9bMjNX6ABxlHoaDL0iybA _model_server_result.datetime_utc '2025-03-05 18:39:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3q3t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":502}' # _entry.id 3Q3T # _exptl.entry_id 3Q3T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3Q3T _cell.length_a 54.253 _cell.length_b 97.585 _cell.length_c 148.651 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3Q3T _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,I 1 1 B,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG A 600 NAG 2 n C NAG 2 C 2 NAG A 601 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 51 A CYS 45 1_555 A SG CYS 58 A CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? disulf ? disulf2 A SG CYS 217 A CYS 206 1_555 A SG CYS 221 A CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? disulf ? disulf3 A SG CYS 259 A CYS 249 1_555 A SG CYS 296 A CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? disulf ? disulf4 B SG CYS 51 B CYS 45 1_555 B SG CYS 58 B CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? disulf ? disulf5 B SG CYS 217 B CYS 206 1_555 B SG CYS 221 B CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? disulf ? disulf6 B SG CYS 259 B CYS 249 1_555 B SG CYS 296 B CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? covale ? covale1 A ND2 ASN 75 A ASN 67 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.413 ? covale ? covale2 B ND2 ASN 75 B ASN 67 1_555 H C1 NAG . B NAG 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.415 ? covale ? covale3 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3Q3T _atom_sites.fract_transf_matrix[1][1] 0.018432 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010247 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006727 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 RX0 A 1 500 500 RX0 RX0 . E 4 GOL A 1 341 341 GOL GOL . F 4 GOL A 1 502 502 GOL GOL . G 3 RX0 B 1 500 500 RX0 RX0 . H 5 NAG B 1 600 600 NAG NAG . I 6 HOH A 1 342 342 HOH HOH . I 6 HOH A 2 343 343 HOH HOH . I 6 HOH A 3 344 344 HOH HOH . I 6 HOH A 4 345 345 HOH HOH . I 6 HOH A 5 346 346 HOH HOH . I 6 HOH A 6 347 347 HOH HOH . I 6 HOH A 7 348 348 HOH HOH . I 6 HOH A 8 349 349 HOH HOH . I 6 HOH A 9 350 350 HOH HOH . I 6 HOH A 10 351 351 HOH HOH . I 6 HOH A 11 352 352 HOH HOH . I 6 HOH A 12 353 353 HOH HOH . I 6 HOH A 13 354 354 HOH HOH . I 6 HOH A 14 355 355 HOH HOH . I 6 HOH A 15 356 356 HOH HOH . I 6 HOH A 16 357 357 HOH HOH . I 6 HOH A 17 358 358 HOH HOH . I 6 HOH A 18 359 359 HOH HOH . I 6 HOH A 19 360 360 HOH HOH . I 6 HOH A 20 361 361 HOH HOH . I 6 HOH A 21 362 362 HOH HOH . I 6 HOH A 22 363 363 HOH HOH . I 6 HOH A 23 364 364 HOH HOH . I 6 HOH A 24 365 365 HOH HOH . I 6 HOH A 25 366 366 HOH HOH . I 6 HOH A 26 367 367 HOH HOH . I 6 HOH A 27 368 368 HOH HOH . I 6 HOH A 28 369 369 HOH HOH . I 6 HOH A 29 370 370 HOH HOH . I 6 HOH A 30 371 371 HOH HOH . I 6 HOH A 31 372 372 HOH HOH . I 6 HOH A 32 373 373 HOH HOH . I 6 HOH A 33 374 374 HOH HOH . I 6 HOH A 34 375 375 HOH HOH . I 6 HOH A 35 376 376 HOH HOH . I 6 HOH A 36 377 377 HOH HOH . I 6 HOH A 37 378 378 HOH HOH . I 6 HOH A 38 379 379 HOH HOH . I 6 HOH A 39 380 380 HOH HOH . I 6 HOH A 40 381 381 HOH HOH . I 6 HOH A 41 382 382 HOH HOH . I 6 HOH A 42 383 383 HOH HOH . I 6 HOH A 43 384 384 HOH HOH . I 6 HOH A 44 385 385 HOH HOH . I 6 HOH A 45 386 386 HOH HOH . I 6 HOH A 46 387 387 HOH HOH . I 6 HOH A 47 388 388 HOH HOH . I 6 HOH A 48 389 389 HOH HOH . I 6 HOH A 49 390 390 HOH HOH . I 6 HOH A 50 391 391 HOH HOH . I 6 HOH A 51 392 392 HOH HOH . I 6 HOH A 52 393 393 HOH HOH . I 6 HOH A 53 394 394 HOH HOH . I 6 HOH A 54 395 395 HOH HOH . I 6 HOH A 55 396 396 HOH HOH . I 6 HOH A 56 397 397 HOH HOH . I 6 HOH A 57 398 398 HOH HOH . I 6 HOH A 58 399 399 HOH HOH . I 6 HOH A 59 400 400 HOH HOH . I 6 HOH A 60 401 401 HOH HOH . I 6 HOH A 61 402 402 HOH HOH . I 6 HOH A 62 403 403 HOH HOH . I 6 HOH A 63 404 404 HOH HOH . I 6 HOH A 64 405 405 HOH HOH . I 6 HOH A 65 406 406 HOH HOH . J 6 HOH B 1 341 341 HOH HOH . J 6 HOH B 2 342 342 HOH HOH . J 6 HOH B 3 343 343 HOH HOH . J 6 HOH B 4 344 344 HOH HOH . J 6 HOH B 5 345 345 HOH HOH . J 6 HOH B 6 346 346 HOH HOH . J 6 HOH B 7 347 347 HOH HOH . J 6 HOH B 8 348 348 HOH HOH . J 6 HOH B 9 349 349 HOH HOH . J 6 HOH B 10 350 350 HOH HOH . J 6 HOH B 11 351 351 HOH HOH . J 6 HOH B 12 352 352 HOH HOH . J 6 HOH B 13 353 353 HOH HOH . J 6 HOH B 14 354 354 HOH HOH . J 6 HOH B 15 355 355 HOH HOH . J 6 HOH B 16 356 356 HOH HOH . J 6 HOH B 17 357 357 HOH HOH . J 6 HOH B 18 358 358 HOH HOH . J 6 HOH B 19 359 359 HOH HOH . J 6 HOH B 20 360 360 HOH HOH . J 6 HOH B 21 361 361 HOH HOH . J 6 HOH B 22 362 362 HOH HOH . J 6 HOH B 23 363 363 HOH HOH . J 6 HOH B 24 364 364 HOH HOH . J 6 HOH B 25 365 365 HOH HOH . J 6 HOH B 26 366 366 HOH HOH . J 6 HOH B 27 367 367 HOH HOH . J 6 HOH B 28 368 368 HOH HOH . J 6 HOH B 29 369 369 HOH HOH . J 6 HOH B 30 370 370 HOH HOH . J 6 HOH B 31 371 371 HOH HOH . J 6 HOH B 32 372 372 HOH HOH . J 6 HOH B 33 373 373 HOH HOH . J 6 HOH B 34 374 374 HOH HOH . J 6 HOH B 35 375 375 HOH HOH . J 6 HOH B 36 376 376 HOH HOH . J 6 HOH B 37 377 377 HOH HOH . J 6 HOH B 38 378 378 HOH HOH . J 6 HOH B 39 379 379 HOH HOH . J 6 HOH B 40 380 380 HOH HOH . J 6 HOH B 41 381 381 HOH HOH . J 6 HOH B 42 382 382 HOH HOH . J 6 HOH B 43 383 383 HOH HOH . J 6 HOH B 44 384 384 HOH HOH . J 6 HOH B 45 385 385 HOH HOH . J 6 HOH B 46 386 386 HOH HOH . J 6 HOH B 47 387 387 HOH HOH . J 6 HOH B 48 388 388 HOH HOH . J 6 HOH B 49 389 389 HOH HOH . J 6 HOH B 50 390 390 HOH HOH . J 6 HOH B 51 391 391 HOH HOH . J 6 HOH B 52 392 392 HOH HOH . J 6 HOH B 53 393 393 HOH HOH . J 6 HOH B 54 394 394 HOH HOH . J 6 HOH B 55 395 395 HOH HOH . J 6 HOH B 56 396 396 HOH HOH . J 6 HOH B 57 397 397 HOH HOH . J 6 HOH B 58 398 398 HOH HOH . J 6 HOH B 59 399 399 HOH HOH . J 6 HOH B 60 400 400 HOH HOH . J 6 HOH B 61 401 401 HOH HOH . J 6 HOH B 62 402 402 HOH HOH . J 6 HOH B 63 403 403 HOH HOH . J 6 HOH B 64 404 404 HOH HOH . J 6 HOH B 65 405 405 HOH HOH . J 6 HOH B 66 406 406 HOH HOH . J 6 HOH B 67 407 407 HOH HOH . J 6 HOH B 68 408 408 HOH HOH . J 6 HOH B 69 409 409 HOH HOH . J 6 HOH B 70 410 410 HOH HOH . J 6 HOH B 71 411 411 HOH HOH . J 6 HOH B 72 412 412 HOH HOH . J 6 HOH B 73 413 413 HOH HOH . J 6 HOH B 74 414 414 HOH HOH . J 6 HOH B 75 415 415 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 4 50.013 -9.537 5.914 1 54.98 ? C1 GOL 502 A 1 HETATM 2 O O1 GOL . . . F 4 50.183 -8.41 5.067 1 55.54 ? O1 GOL 502 A 1 HETATM 3 C C2 GOL . . . F 4 48.735 -10.31 5.562 1 53.78 ? C2 GOL 502 A 1 HETATM 4 O O2 GOL . . . F 4 49.01 -11.241 4.532 1 53.32 ? O2 GOL 502 A 1 HETATM 5 C C3 GOL . . . F 4 48.324 -11.086 6.811 1 54.03 ? C3 GOL 502 A 1 HETATM 6 O O3 GOL . . . F 4 47.062 -11.706 6.65 1 52.59 ? O3 GOL 502 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #