data_3Q41
#
_model_server_result.job_id            ZWM0a2GeJftuRqhhw9ZURA 
_model_server_result.datetime_utc      '2024-11-05 00:30:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3q41 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":407}' 
#
_entry.id    3Q41 
#
_exptl.entry_id    3Q41 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    15 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3Q41 
_cell.length_a            164.679 
_cell.length_b            164.679 
_cell.length_c            147.258 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3Q41 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,AA,BA 1 1 
C,T,U,V,W,X,Y,Z,CA 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
? 2 Q N N 
? 2 T N N 
? 2 U N N 
? 2 V N N 
? 2 W N N 
? 2 X N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 59 A CYS 79 1_555 A SG CYS 288 A CYS 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf2 B SG CYS 59 B CYS 79 1_555 B SG CYS 288 B CYS 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf3 C SG CYS 59 C CYS 79 1_555 C SG CYS 288 C CYS 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
covale ? covale1 A ND2 ASN 41 A ASN 61 1_555 D C1 NAG . A NAG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? 
covale ? covale2 A ND2 ASN 183 A ASN 203 1_555 E C1 NAG . A NAG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale3 A ND2 ASN 219 A ASN 239 1_555 F C1 NAG . A NAG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? 
covale ? covale4 A ND2 ASN 256 A ASN 276 1_555 G C1 NAG . A NAG 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale5 A ND2 ASN 348 A ASN 368 1_555 H C1 NAG . A NAG 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? 
covale ? covale6 B ND2 ASN 41 B ASN 61 1_555 M C1 NAG . B NAG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale7 B ND2 ASN 183 B ASN 203 1_555 N C1 NAG . B NAG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? 
covale ? covale8 B ND2 ASN 219 B ASN 239 1_555 O C1 NAG . B NAG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? 
covale ? covale9 B ND2 ASN 256 B ASN 276 1_555 P C1 NAG . B NAG 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? 
covale ? covale10 B ND2 ASN 348 B ASN 368 1_555 Q C1 NAG . B NAG 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? 
covale ? covale11 C ND2 ASN 41 C ASN 61 1_555 T C1 NAG . C NAG 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
covale ? covale12 C ND2 ASN 183 C ASN 203 1_555 U C1 NAG . C NAG 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
covale ? covale13 C ND2 ASN 219 C ASN 239 1_555 V C1 NAG . C NAG 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? 
covale ? covale14 C ND2 ASN 256 C ASN 276 1_555 W C1 NAG . C NAG 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
covale ? covale15 C ND2 ASN 348 C ASN 368 1_555 X C1 NAG . C NAG 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     3Q41 
_atom_sites.fract_transf_matrix[1][1]    0.006072 
_atom_sites.fract_transf_matrix[1][2]    0.003506 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007012 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006791 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 NAG A 1 405 405 NAG NAG . 
E 2 NAG A 1 406 406 NAG NAG . 
F 2 NAG A 1 407 407 NAG NAG . 
G 2 NAG A 1 408 408 NAG NAG . 
H 2 NAG A 1 409 409 NAG NAG . 
I 3 CL A 1 1 1 CL CL . 
J 3 CL A 1 3 3 CL CL . 
K 3 CL A 1 4 4 CL CL . 
L 3 CL A 1 5 5 CL CL . 
M 2 NAG B 1 405 405 NAG NAG . 
N 2 NAG B 1 406 406 NAG NAG . 
O 2 NAG B 1 407 407 NAG NAG . 
P 2 NAG B 1 408 408 NAG NAG . 
Q 2 NAG B 1 409 409 NAG NAG . 
R 3 CL B 1 6 6 CL CL . 
S 3 CL B 1 7 7 CL CL . 
T 2 NAG C 1 405 405 NAG NAG . 
U 2 NAG C 1 406 406 NAG NAG . 
V 2 NAG C 1 407 407 NAG NAG . 
W 2 NAG C 1 408 408 NAG NAG . 
X 2 NAG C 1 409 409 NAG NAG . 
Y 3 CL C 1 2 2 CL CL . 
Z 3 CL C 1 8 8 CL CL . 
AA 4 HOH A 1 6 6 HOH HOH . 
AA 4 HOH A 2 7 7 HOH HOH . 
AA 4 HOH A 3 10 10 HOH HOH . 
AA 4 HOH A 4 11 11 HOH HOH . 
AA 4 HOH A 5 13 13 HOH HOH . 
AA 4 HOH A 6 19 19 HOH HOH . 
AA 4 HOH A 7 410 410 HOH HOH . 
BA 4 HOH B 1 2 2 HOH HOH . 
BA 4 HOH B 2 3 3 HOH HOH . 
BA 4 HOH B 3 4 4 HOH HOH . 
BA 4 HOH B 4 5 5 HOH HOH . 
BA 4 HOH B 5 9 9 HOH HOH . 
BA 4 HOH B 6 12 12 HOH HOH . 
BA 4 HOH B 7 14 14 HOH HOH . 
BA 4 HOH B 8 15 15 HOH HOH . 
BA 4 HOH B 9 18 18 HOH HOH . 
BA 4 HOH B 10 410 410 HOH HOH . 
CA 4 HOH C 1 1 1 HOH HOH . 
CA 4 HOH C 2 16 16 HOH HOH . 
CA 4 HOH C 3 17 17 HOH HOH . 
CA 4 HOH C 4 20 20 HOH HOH . 
CA 4 HOH C 5 410 410 HOH HOH . 
CA 4 HOH C 6 411 411 HOH HOH . 
CA 4 HOH C 7 412 412 HOH HOH . 
CA 4 HOH C 8 413 413 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . O 2 -42.271 -26.489 -17.693 1 82.98 ? C1 NAG 407 B 1 
HETATM 2 C C2 NAG . . . O 2 -42.823 -25.157 -17.178 1 84.38 ? C2 NAG 407 B 1 
HETATM 3 C C3 NAG . . . O 2 -44.257 -24.955 -17.684 1 84.69 ? C3 NAG 407 B 1 
HETATM 4 C C4 NAG . . . O 2 -44.431 -25.266 -19.183 1 84.83 ? C4 NAG 407 B 1 
HETATM 5 C C5 NAG . . . O 2 -43.51 -26.371 -19.726 1 84.62 ? C5 NAG 407 B 1 
HETATM 6 C C6 NAG . . . O 2 -43.299 -26.201 -21.229 1 84.73 ? C6 NAG 407 B 1 
HETATM 7 C C7 NAG . . . O 2 -41.665 -24.588 -15.078 1 84.76 ? C7 NAG 407 B 1 
HETATM 8 C C8 NAG . . . O 2 -41.793 -24.533 -13.584 1 84.64 ? C8 NAG 407 B 1 
HETATM 9 N N2 NAG . . . O 2 -42.748 -25.036 -15.727 1 84.35 ? N2 NAG 407 B 1 
HETATM 10 O O3 NAG . . . O 2 -44.632 -23.614 -17.441 1 85.03 ? O3 NAG 407 B 1 
HETATM 11 O O4 NAG . . . O 2 -45.773 -25.625 -19.452 1 84.98 ? O4 NAG 407 B 1 
HETATM 12 O O5 NAG . . . O 2 -42.234 -26.366 -19.106 1 84.06 ? O5 NAG 407 B 1 
HETATM 13 O O6 NAG . . . O 2 -43.488 -27.451 -21.867 1 85.1 ? O6 NAG 407 B 1 
HETATM 14 O O7 NAG . . . O 2 -40.608 -24.239 -15.623 1 84.71 ? O7 NAG 407 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    27 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           14 
#