data_3Q4C # _model_server_result.job_id XT0F5S99esfTQV16su5qYA _model_server_result.datetime_utc '2024-11-04 23:17:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3q4c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1}' # _entry.id 3Q4C # _exptl.entry_id 3Q4C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 558.935 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(1,2,3,4,5,6-eta)-(1S,2R,3R,4R,5S,6S)-1-carboxycyclohexane-1,2,3,4,5,6-hexayl](chloro)(3-methyl-5,7-dioxo-6,7-dihydro-5H-pyrido[2,3-a]pyrrolo[3,4-c]carbazol-12-ide-kappa~2~N~1~,N~12~)ruthenium(1+)' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3Q4C _cell.length_a 94.905 _cell.length_b 94.905 _cell.length_c 163.349 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3Q4C _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C 1 1 B 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C25 H16 Cl N3 O4 Ru 1' _chem_comp.formula_weight 558.935 _chem_comp.id RSW _chem_comp.mon_nstd_flag . _chem_comp.name '[(1,2,3,4,5,6-eta)-(1S,2R,3R,4R,5S,6S)-1-carboxycyclohexane-1,2,3,4,5,6-hexayl](chloro)(3-methyl-5,7-dioxo-6,7-dihydro-5H-pyrido[2,3-a]pyrrolo[3,4-c]carbazol-12-ide-kappa~2~N~1~,N~12~)ruthenium(1+)' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL RU RSW sing 275 n n C5 C6 RSW doub 276 n y C5 C4 RSW sing 277 n y C6 C7 RSW sing 278 n y C4 C3 RSW doub 279 n y C7 C8 RSW doub 280 n y C3 C8 RSW sing 281 n y C3 N2 RSW sing 282 n y C8 C9 RSW sing 283 n y O4 C28 RSW sing 284 n n O C11 RSW doub 285 n n N2 C1 RSW sing 286 n y N2 RU RSW sing 287 n n C9 C1 RSW doub 288 n y C9 C10 RSW sing 289 n y C11 C10 RSW sing 290 n n C11 N12 RSW sing 291 n n C1 C20 RSW sing 292 n y RU C23 RSW sing 293 n n RU N19 RSW sing 294 n n RU C24 RSW sing 295 n n RU C22 RSW sing 296 n n RU C25 RSW sing 297 n n RU C27 RSW sing 298 n n RU C26 RSW sing 299 n n C10 C14 RSW doub 300 n y C23 C24 RSW sing 301 n n C23 C22 RSW sing 302 n n N12 C13 RSW sing 303 n n C28 C22 RSW sing 304 n n C28 O3 RSW doub 305 n n C20 N19 RSW doub 306 n y C20 C15 RSW sing 307 n y C14 C13 RSW sing 308 n n C14 C15 RSW sing 309 n y N19 C18 RSW sing 310 n y C24 C25 RSW sing 311 n n C13 O2 RSW doub 312 n n C22 C27 RSW sing 313 n n C15 C16 RSW doub 314 n y C18 C17 RSW doub 315 n y C16 C17 RSW sing 316 n y C17 C21 RSW sing 317 n n C25 C26 RSW sing 318 n n C27 C26 RSW sing 319 n n C4 H4 RSW sing 320 n n C5 H5 RSW sing 321 n n C6 H6 RSW sing 322 n n C7 H7 RSW sing 323 n n N12 HN12 RSW sing 324 n n C16 H16 RSW sing 325 n n C18 H18 RSW sing 326 n n C21 H121 RSW sing 327 n n C21 H221 RSW sing 328 n n C21 H321 RSW sing 329 n n C23 H23 RSW sing 330 n n C24 H24 RSW sing 331 n n C25 H25 RSW sing 332 n n C26 H26 RSW sing 333 n n C27 H27 RSW sing 334 n n O4 HO4 RSW sing 335 n n # _atom_sites.entry_id 3Q4C _atom_sites.fract_transf_matrix[1][1] 0.010537 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010537 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006122 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id RSW _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 1 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id RSW _pdbx_nonpoly_scheme.auth_mon_id RSW _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O RSW . . . C 2 -20.354 12.176 -0.101 0.5 84.74 ? O RSW 1 A 1 HETATM 2 CL CL RSW . . . C 2 -13.059 9.851 -1.6 0.5 91.55 ? CL RSW 1 A 1 HETATM 3 RU RU RSW . . . C 2 -13.356 10.671 0.431 0.5 93.13 ? RU RSW 1 A 1 HETATM 4 C C1 RSW . . . C 2 -16.022 10.967 0.348 0.5 90.03 ? C1 RSW 1 A 1 HETATM 5 N N2 RSW . . . C 2 -14.9 11.721 0.021 0.5 90.96 ? N2 RSW 1 A 1 HETATM 6 O O2 RSW . . . C 2 -20.058 7.966 1.633 0.5 84.74 ? O2 RSW 1 A 1 HETATM 7 C C3 RSW . . . C 2 -15.408 12.974 -0.495 0.5 90.03 ? C3 RSW 1 A 1 HETATM 8 O O3 RSW . . . C 2 -10.15 8.35 1.296 0.5 88.86 ? O3 RSW 1 A 1 HETATM 9 C C4 RSW . . . C 2 -14.725 14.157 -1 0.5 89.34 ? C4 RSW 1 A 1 HETATM 10 O O4 RSW . . . C 2 -9.348 9.81 -0.118 0.5 88.48 ? O4 RSW 1 A 1 HETATM 11 C C5 RSW . . . C 2 -15.536 15.267 -1.451 0.5 88.62 ? C5 RSW 1 A 1 HETATM 12 C C6 RSW . . . C 2 -16.978 15.21 -1.404 0.5 88.66 ? C6 RSW 1 A 1 HETATM 13 C C7 RSW . . . C 2 -17.664 14.029 -0.901 0.5 89.15 ? C7 RSW 1 A 1 HETATM 14 C C8 RSW . . . C 2 -16.871 12.907 -0.446 0.5 89.42 ? C8 RSW 1 A 1 HETATM 15 C C9 RSW . . . C 2 -17.259 11.631 0.088 0.5 89.01 ? C9 RSW 1 A 1 HETATM 16 C C10 RSW . . . C 2 -18.462 10.812 0.441 0.5 87.39 ? C10 RSW 1 A 1 HETATM 17 C C11 RSW . . . C 2 -19.844 11.086 0.343 0.5 86.23 ? C11 RSW 1 A 1 HETATM 18 N N12 RSW . . . C 2 -20.597 10.045 0.781 0.5 85.84 ? N12 RSW 1 A 1 HETATM 19 C C13 RSW . . . C 2 -19.697 9.104 1.16 0.5 86.23 ? C13 RSW 1 A 1 HETATM 20 C C14 RSW . . . C 2 -18.354 9.482 0.988 0.5 87.29 ? C14 RSW 1 A 1 HETATM 21 C C15 RSW . . . C 2 -17.041 8.848 1.236 0.5 88.85 ? C15 RSW 1 A 1 HETATM 22 C C16 RSW . . . C 2 -16.752 7.53 1.776 0.5 89.18 ? C16 RSW 1 A 1 HETATM 23 C C17 RSW . . . C 2 -15.376 7.094 1.937 0.5 89.48 ? C17 RSW 1 A 1 HETATM 24 C C18 RSW . . . C 2 -14.266 7.945 1.571 0.5 90.07 ? C18 RSW 1 A 1 HETATM 25 N N19 RSW . . . C 2 -14.526 9.251 1.042 0.5 91.02 ? N19 RSW 1 A 1 HETATM 26 C C20 RSW . . . C 2 -15.859 9.657 0.888 0.5 90.02 ? C20 RSW 1 A 1 HETATM 27 C C21 RSW . . . C 2 -15.094 5.731 2.494 0.5 88.87 ? C21 RSW 1 A 1 HETATM 28 C C22 RSW . . . C 2 -11.377 10.393 1.235 0.5 91.39 ? C22 RSW 1 A 1 HETATM 29 C C23 RSW . . . C 2 -11.492 11.688 0.658 0.5 91.63 ? C23 RSW 1 A 1 HETATM 30 C C24 RSW . . . C 2 -12.513 12.552 1.042 0.5 92.01 ? C24 RSW 1 A 1 HETATM 31 C C25 RSW . . . C 2 -13.461 12.147 2.016 0.5 91.88 ? C25 RSW 1 A 1 HETATM 32 C C26 RSW . . . C 2 -13.36 10.892 2.607 0.5 92.17 ? C26 RSW 1 A 1 HETATM 33 C C27 RSW . . . C 2 -12.329 10.006 2.217 0.5 91.79 ? C27 RSW 1 A 1 HETATM 34 C C28 RSW . . . C 2 -10.268 9.47 0.809 0.5 89.75 ? C28 RSW 1 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 34 #