data_3Q4I
#
_model_server_result.job_id            yd6AUWo8EM-SxNQcYPg-5w 
_model_server_result.datetime_utc      '2024-11-17 17:32:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3q4i 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":302}' 
#
_entry.id    3Q4I 
#
_exptl.entry_id    3Q4I 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              157.25 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'GADOLINIUM ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3Q4I 
_cell.length_a            61.005 
_cell.length_b            70.855 
_cell.length_c            111.793 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3Q4I 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O GLY 96 A GLY 96 1_555 C GD GD3 . A GD3 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? 
metalc ? metalc2 A OE1 GLU 112 A GLU 112 1_555 C GD GD3 . A GD3 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.422 ? 
metalc ? metalc3 A OE2 GLU 116 A GLU 116 1_555 C GD GD3 . A GD3 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? 
metalc ? metalc4 F O HOH . A HOH 212 1_555 C GD GD3 . A GD3 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.818 ? 
metalc ? metalc5 B OE2 GLU 30 B GLU 30 1_555 E GD GD3 . B GD3 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.939 ? 
metalc ? metalc6 B O GLY 96 B GLY 96 1_555 D GD GD3 . B GD3 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? 
metalc ? metalc7 B OE1 GLU 112 B GLU 112 1_555 D GD GD3 . B GD3 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.073 ? 
metalc ? metalc8 B OE2 GLU 116 B GLU 116 1_555 D GD GD3 . B GD3 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.757 ? 
metalc ? metalc9 B OE2 GLU 163 B GLU 163 1_555 E GD GD3 . B GD3 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? 
metalc ? metalc10 B OE1 GLU 163 B GLU 163 1_555 E GD GD3 . B GD3 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.223 ? 
metalc ? metalc11 G O HOH . B HOH 211 1_555 E GD GD3 . B GD3 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.084 ? 
metalc ? metalc12 G O HOH . B HOH 212 1_555 E GD GD3 . B GD3 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.462 ? 
metalc ? metalc13 G O HOH . B HOH 214 1_555 D GD GD3 . B GD3 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.984 ? 
metalc ? metalc14 G O HOH . B HOH 220 1_555 E GD GD3 . B GD3 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.202 ? 
metalc ? metalc15 G O HOH . B HOH 223 1_555 E GD GD3 . B GD3 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? 
#
_chem_comp.formula           'Gd 3' 
_chem_comp.formula_weight    157.25 
_chem_comp.id                GD3 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'GADOLINIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3Q4I 
_atom_sites.fract_transf_matrix[1][1]    0.016392 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014113 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008945 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GD3 A 1 301 301 GD3 GD3 . 
D 2 GD3 B 1 302 302 GD3 GD3 . 
E 2 GD3 B 1 303 303 GD3 GD3 . 
F 3 HOH A 1 206 5 HOH HOH . 
F 3 HOH A 2 207 11 HOH HOH . 
F 3 HOH A 3 208 12 HOH HOH . 
F 3 HOH A 4 209 13 HOH HOH . 
F 3 HOH A 5 210 14 HOH HOH . 
F 3 HOH A 6 211 15 HOH HOH . 
F 3 HOH A 7 212 16 HOH HOH . 
F 3 HOH A 8 213 27 HOH HOH . 
F 3 HOH A 9 214 28 HOH HOH . 
F 3 HOH A 10 215 30 HOH HOH . 
F 3 HOH A 11 216 31 HOH HOH . 
F 3 HOH A 12 217 32 HOH HOH . 
F 3 HOH A 13 218 33 HOH HOH . 
F 3 HOH A 14 219 35 HOH HOH . 
F 3 HOH A 15 220 38 HOH HOH . 
F 3 HOH A 16 221 41 HOH HOH . 
F 3 HOH A 17 222 44 HOH HOH . 
F 3 HOH A 18 223 45 HOH HOH . 
F 3 HOH A 19 224 47 HOH HOH . 
F 3 HOH A 20 225 52 HOH HOH . 
F 3 HOH A 21 226 55 HOH HOH . 
F 3 HOH A 22 227 56 HOH HOH . 
F 3 HOH A 23 228 59 HOH HOH . 
F 3 HOH A 24 229 60 HOH HOH . 
F 3 HOH A 25 230 61 HOH HOH . 
F 3 HOH A 26 231 62 HOH HOH . 
F 3 HOH A 27 232 63 HOH HOH . 
F 3 HOH A 28 233 64 HOH HOH . 
F 3 HOH A 29 234 65 HOH HOH . 
F 3 HOH A 30 235 68 HOH HOH . 
F 3 HOH A 31 236 69 HOH HOH . 
F 3 HOH A 32 237 70 HOH HOH . 
F 3 HOH A 33 238 71 HOH HOH . 
G 3 HOH B 1 206 1 HOH HOH . 
G 3 HOH B 2 207 3 HOH HOH . 
G 3 HOH B 3 208 4 HOH HOH . 
G 3 HOH B 4 209 6 HOH HOH . 
G 3 HOH B 5 210 7 HOH HOH . 
G 3 HOH B 6 211 19 HOH HOH . 
G 3 HOH B 7 212 20 HOH HOH . 
G 3 HOH B 8 213 21 HOH HOH . 
G 3 HOH B 9 214 22 HOH HOH . 
G 3 HOH B 10 215 23 HOH HOH . 
G 3 HOH B 11 216 24 HOH HOH . 
G 3 HOH B 12 217 25 HOH HOH . 
G 3 HOH B 13 218 26 HOH HOH . 
G 3 HOH B 14 219 29 HOH HOH . 
G 3 HOH B 15 220 34 HOH HOH . 
G 3 HOH B 16 221 36 HOH HOH . 
G 3 HOH B 17 222 37 HOH HOH . 
G 3 HOH B 18 223 39 HOH HOH . 
G 3 HOH B 19 224 40 HOH HOH . 
G 3 HOH B 20 225 42 HOH HOH . 
G 3 HOH B 21 226 43 HOH HOH . 
G 3 HOH B 22 227 46 HOH HOH . 
G 3 HOH B 23 228 48 HOH HOH . 
G 3 HOH B 24 229 49 HOH HOH . 
G 3 HOH B 25 230 66 HOH HOH . 
G 3 HOH B 26 231 67 HOH HOH . 
G 3 HOH B 27 232 73 HOH HOH . 
G 3 HOH B 28 233 75 HOH HOH . 
G 3 HOH B 29 234 76 HOH HOH . 
G 3 HOH B 30 235 77 HOH HOH . 
G 3 HOH B 31 236 78 HOH HOH . 
G 3 HOH B 32 237 80 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           GD 
_atom_site.label_atom_id         GD 
_atom_site.label_comp_id         GD3 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               38.297 
_atom_site.Cartn_y               10.189 
_atom_site.Cartn_z               44.473 
_atom_site.occupancy             0.5 
_atom_site.B_iso_or_equiv        86.18 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          GD 
_atom_site.auth_comp_id          GD3 
_atom_site.auth_seq_id           302 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              50 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           1 
#