data_3Q4P
#
_model_server_result.job_id            9ehv4PDO8nWS-q4buvu0LA 
_model_server_result.datetime_utc      '2024-12-04 02:20:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3q4p 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":249}' 
#
_entry.id    3Q4P 
#
_exptl.entry_id    3Q4P 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3Q4P 
_cell.length_a            129.848 
_cell.length_b            129.848 
_cell.length_c            39.717 
_cell.Z_PDB               9 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3Q4P 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            ND2 
_struct_conn.ptnr1_label_comp_id            ASN 
_struct_conn.ptnr1_label_seq_id             227 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             ASN 
_struct_conn.ptnr1_auth_seq_id              227 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            E 
_struct_conn.ptnr2_label_atom_id            C1 
_struct_conn.ptnr2_label_comp_id            NAG 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             NAG 
_struct_conn.ptnr2_auth_seq_id              250 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.449 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 116 n n 
C1 C2 GOL sing 117 n n 
C1 H11 GOL sing 118 n n 
C1 H12 GOL sing 119 n n 
O1 HO1 GOL sing 120 n n 
C2 O2 GOL sing 121 n n 
C2 C3 GOL sing 122 n n 
C2 H2 GOL sing 123 n n 
O2 HO2 GOL sing 124 n n 
C3 O3 GOL sing 125 n n 
C3 H31 GOL sing 126 n n 
C3 H32 GOL sing 127 n n 
O3 HO3 GOL sing 128 n n 
#
_atom_sites.entry_id                     3Q4P 
_atom_sites.fract_transf_matrix[1][1]    0.007701 
_atom_sites.fract_transf_matrix[1][2]    0.004446 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008893 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.025178 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 M7G A 1 247 1 M7G M7G . 
C 3 PEG A 1 248 1 PEG PEG . 
D 4 GOL A 1 249 2 GOL GOL . 
E 5 NAG A 1 250 3 NAG NAG . 
F 6 HOH A 1 251 1 HOH HOH . 
F 6 HOH A 2 252 2 HOH HOH . 
F 6 HOH A 3 253 4 HOH HOH . 
F 6 HOH A 4 254 6 HOH HOH . 
F 6 HOH A 5 255 7 HOH HOH . 
F 6 HOH A 6 256 8 HOH HOH . 
F 6 HOH A 7 257 9 HOH HOH . 
F 6 HOH A 8 258 10 HOH HOH . 
F 6 HOH A 9 259 11 HOH HOH . 
F 6 HOH A 10 260 12 HOH HOH . 
F 6 HOH A 11 261 13 HOH HOH . 
F 6 HOH A 12 262 14 HOH HOH . 
F 6 HOH A 13 263 15 HOH HOH . 
F 6 HOH A 14 264 16 HOH HOH . 
F 6 HOH A 15 265 17 HOH HOH . 
F 6 HOH A 16 266 18 HOH HOH . 
F 6 HOH A 17 267 19 HOH HOH . 
F 6 HOH A 18 268 20 HOH HOH . 
F 6 HOH A 19 269 21 HOH HOH . 
F 6 HOH A 20 270 22 HOH HOH . 
F 6 HOH A 21 271 23 HOH HOH . 
F 6 HOH A 22 272 24 HOH HOH . 
F 6 HOH A 23 273 25 HOH HOH . 
F 6 HOH A 24 274 26 HOH HOH . 
F 6 HOH A 25 275 27 HOH HOH . 
F 6 HOH A 26 276 28 HOH HOH . 
F 6 HOH A 27 277 29 HOH HOH . 
F 6 HOH A 28 278 30 HOH HOH . 
F 6 HOH A 29 279 31 HOH HOH . 
F 6 HOH A 30 280 32 HOH HOH . 
F 6 HOH A 31 281 33 HOH HOH . 
F 6 HOH A 32 282 34 HOH HOH . 
F 6 HOH A 33 283 35 HOH HOH . 
F 6 HOH A 34 284 36 HOH HOH . 
F 6 HOH A 35 285 37 HOH HOH . 
F 6 HOH A 36 286 38 HOH HOH . 
F 6 HOH A 37 287 39 HOH HOH . 
F 6 HOH A 38 288 40 HOH HOH . 
F 6 HOH A 39 289 41 HOH HOH . 
F 6 HOH A 40 290 42 HOH HOH . 
F 6 HOH A 41 291 43 HOH HOH . 
F 6 HOH A 42 292 44 HOH HOH . 
F 6 HOH A 43 293 45 HOH HOH . 
F 6 HOH A 44 294 46 HOH HOH . 
F 6 HOH A 45 295 47 HOH HOH . 
F 6 HOH A 46 296 48 HOH HOH . 
F 6 HOH A 47 297 49 HOH HOH . 
F 6 HOH A 48 298 50 HOH HOH . 
F 6 HOH A 49 299 51 HOH HOH . 
F 6 HOH A 50 300 52 HOH HOH . 
F 6 HOH A 51 301 53 HOH HOH . 
F 6 HOH A 52 302 54 HOH HOH . 
F 6 HOH A 53 303 55 HOH HOH . 
F 6 HOH A 54 304 56 HOH HOH . 
F 6 HOH A 55 305 57 HOH HOH . 
F 6 HOH A 56 306 58 HOH HOH . 
F 6 HOH A 57 307 59 HOH HOH . 
F 6 HOH A 58 308 60 HOH HOH . 
F 6 HOH A 59 309 61 HOH HOH . 
F 6 HOH A 60 310 62 HOH HOH . 
F 6 HOH A 61 311 63 HOH HOH . 
F 6 HOH A 62 312 64 HOH HOH . 
F 6 HOH A 63 313 65 HOH HOH . 
F 6 HOH A 64 314 66 HOH HOH . 
F 6 HOH A 65 315 67 HOH HOH . 
F 6 HOH A 66 316 68 HOH HOH . 
F 6 HOH A 67 317 69 HOH HOH . 
F 6 HOH A 68 318 70 HOH HOH . 
F 6 HOH A 69 319 71 HOH HOH . 
F 6 HOH A 70 320 72 HOH HOH . 
F 6 HOH A 71 321 73 HOH HOH . 
F 6 HOH A 72 322 74 HOH HOH . 
F 6 HOH A 73 323 75 HOH HOH . 
F 6 HOH A 74 324 76 HOH HOH . 
F 6 HOH A 75 325 77 HOH HOH . 
F 6 HOH A 76 326 78 HOH HOH . 
F 6 HOH A 77 327 79 HOH HOH . 
F 6 HOH A 78 328 80 HOH HOH . 
F 6 HOH A 79 329 81 HOH HOH . 
F 6 HOH A 80 330 82 HOH HOH . 
F 6 HOH A 81 331 83 HOH HOH . 
F 6 HOH A 82 332 84 HOH HOH . 
F 6 HOH A 83 333 85 HOH HOH . 
F 6 HOH A 84 334 86 HOH HOH . 
F 6 HOH A 85 335 87 HOH HOH . 
F 6 HOH A 86 336 88 HOH HOH . 
F 6 HOH A 87 337 89 HOH HOH . 
F 6 HOH A 88 338 90 HOH HOH . 
F 6 HOH A 89 339 91 HOH HOH . 
F 6 HOH A 90 340 92 HOH HOH . 
F 6 HOH A 91 341 93 HOH HOH . 
F 6 HOH A 92 342 94 HOH HOH . 
F 6 HOH A 93 343 95 HOH HOH . 
F 6 HOH A 94 344 96 HOH HOH . 
F 6 HOH A 95 345 97 HOH HOH . 
F 6 HOH A 96 346 98 HOH HOH . 
F 6 HOH A 97 347 99 HOH HOH . 
F 6 HOH A 98 348 100 HOH HOH . 
F 6 HOH A 99 349 101 HOH HOH . 
F 6 HOH A 100 350 102 HOH HOH . 
F 6 HOH A 101 351 103 HOH HOH . 
F 6 HOH A 102 352 104 HOH HOH . 
F 6 HOH A 103 353 105 HOH HOH . 
F 6 HOH A 104 354 106 HOH HOH . 
F 6 HOH A 105 355 107 HOH HOH . 
F 6 HOH A 106 356 108 HOH HOH . 
F 6 HOH A 107 357 109 HOH HOH . 
F 6 HOH A 108 358 110 HOH HOH . 
F 6 HOH A 109 359 111 HOH HOH . 
F 6 HOH A 110 360 112 HOH HOH . 
F 6 HOH A 111 361 113 HOH HOH . 
F 6 HOH A 112 362 114 HOH HOH . 
F 6 HOH A 113 363 115 HOH HOH . 
F 6 HOH A 114 364 116 HOH HOH . 
F 6 HOH A 115 365 117 HOH HOH . 
F 6 HOH A 116 366 118 HOH HOH . 
F 6 HOH A 117 367 119 HOH HOH . 
F 6 HOH A 118 368 120 HOH HOH . 
F 6 HOH A 119 369 121 HOH HOH . 
F 6 HOH A 120 370 122 HOH HOH . 
F 6 HOH A 121 371 123 HOH HOH . 
F 6 HOH A 122 372 124 HOH HOH . 
F 6 HOH A 123 373 125 HOH HOH . 
F 6 HOH A 124 374 126 HOH HOH . 
F 6 HOH A 125 375 127 HOH HOH . 
F 6 HOH A 126 376 128 HOH HOH . 
F 6 HOH A 127 377 129 HOH HOH . 
F 6 HOH A 128 378 130 HOH HOH . 
F 6 HOH A 129 379 131 HOH HOH . 
F 6 HOH A 130 380 132 HOH HOH . 
F 6 HOH A 131 381 133 HOH HOH . 
F 6 HOH A 132 382 134 HOH HOH . 
F 6 HOH A 133 383 135 HOH HOH . 
F 6 HOH A 134 384 136 HOH HOH . 
F 6 HOH A 135 385 138 HOH HOH . 
F 6 HOH A 136 386 139 HOH HOH . 
F 6 HOH A 137 387 140 HOH HOH . 
F 6 HOH A 138 388 141 HOH HOH . 
F 6 HOH A 139 389 142 HOH HOH . 
F 6 HOH A 140 390 143 HOH HOH . 
F 6 HOH A 141 391 144 HOH HOH . 
F 6 HOH A 142 392 145 HOH HOH . 
F 6 HOH A 143 393 146 HOH HOH . 
F 6 HOH A 144 394 147 HOH HOH . 
F 6 HOH A 145 395 148 HOH HOH . 
F 6 HOH A 146 396 149 HOH HOH . 
F 6 HOH A 147 397 150 HOH HOH . 
F 6 HOH A 148 398 151 HOH HOH . 
F 6 HOH A 149 399 152 HOH HOH . 
F 6 HOH A 150 400 153 HOH HOH . 
F 6 HOH A 151 401 154 HOH HOH . 
F 6 HOH A 152 402 155 HOH HOH . 
F 6 HOH A 153 403 156 HOH HOH . 
F 6 HOH A 154 404 157 HOH HOH . 
F 6 HOH A 155 405 158 HOH HOH . 
F 6 HOH A 156 406 159 HOH HOH . 
F 6 HOH A 157 407 160 HOH HOH . 
F 6 HOH A 158 408 161 HOH HOH . 
F 6 HOH A 159 409 162 HOH HOH . 
F 6 HOH A 160 410 163 HOH HOH . 
F 6 HOH A 161 411 164 HOH HOH . 
F 6 HOH A 162 412 165 HOH HOH . 
F 6 HOH A 163 413 166 HOH HOH . 
F 6 HOH A 164 414 167 HOH HOH . 
F 6 HOH A 165 415 168 HOH HOH . 
F 6 HOH A 166 416 169 HOH HOH . 
F 6 HOH A 167 417 170 HOH HOH . 
F 6 HOH A 168 418 171 HOH HOH . 
F 6 HOH A 169 419 172 HOH HOH . 
F 6 HOH A 170 420 173 HOH HOH . 
F 6 HOH A 171 421 174 HOH HOH . 
F 6 HOH A 172 422 175 HOH HOH . 
F 6 HOH A 173 423 176 HOH HOH . 
F 6 HOH A 174 424 177 HOH HOH . 
F 6 HOH A 175 425 178 HOH HOH . 
F 6 HOH A 176 426 179 HOH HOH . 
F 6 HOH A 177 427 180 HOH HOH . 
F 6 HOH A 178 428 181 HOH HOH . 
F 6 HOH A 179 429 182 HOH HOH . 
F 6 HOH A 180 430 183 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 4 11.729 -14.259 -3.184 0.5 28.17 ? C1 GOL 249 A 1 
HETATM 2 O O1 GOL . . . D 4 11.389 -13.462 -2.091 0.5 21.72 ? O1 GOL 249 A 1 
HETATM 3 C C2 GOL . . . D 4 13.177 -13.951 -3.462 0.5 28.54 ? C2 GOL 249 A 1 
HETATM 4 O O2 GOL . . . D 4 13.335 -14.042 -4.863 0.5 29.46 ? O2 GOL 249 A 1 
HETATM 5 C C3 GOL . . . D 4 14.146 -14.863 -2.7 0.5 24.89 ? C3 GOL 249 A 1 
HETATM 6 O O3 GOL . . . D 4 13.626 -15.348 -1.482 0.5 25.52 ? O3 GOL 249 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           387 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#