data_3Q5J # _model_server_result.job_id 6KFMEmipix5VbcNsfM9Cyg _model_server_result.datetime_utc '2024-10-20 07:32:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3q5j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":214}' # _entry.id 3Q5J # _exptl.entry_id 3Q5J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 630.772 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(4E,6Z,8S,9S,10E,12S,13R,14S,16R)-19-{[3-(dimethylamino)propyl]amino}-13-hydroxy-8,14-dimethoxy-4,10,12,16-tetramethyl-3,20,22-trioxo-2-azabicyclo[16.3.1]docosa-1(21),4,6,10,18-pentaen-9-yl carbamate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3Q5J _cell.length_a 111.73 _cell.length_b 111.73 _cell.length_c 48.98 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3Q5J _symmetry.cell_setting ? _symmetry.Int_Tables_number 80 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C33 H50 N4 O8' _chem_comp.formula_weight 630.772 _chem_comp.id D1S _chem_comp.mon_nstd_flag . _chem_comp.name '(4E,6Z,8S,9S,10E,12S,13R,14S,16R)-19-{[3-(dimethylamino)propyl]amino}-13-hydroxy-8,14-dimethoxy-4,10,12,16-tetramethyl-3,20,22-trioxo-2-azabicyclo[16.3.1]docosa-1(21),4,6,10,18-pentaen-9-yl carbamate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAK CBG D1S doub 83 n n CAA OBA D1S sing 84 n n OBA CBO D1S sing 85 n n NAI CBD D1S sing 86 n n CBG NAZ D1S sing 87 n n CBG CBE D1S sing 88 n n OBC CBD D1S sing 89 n n OBC CBR D1S sing 90 n n CBD OAJ D1S doub 91 n n NAZ CBH D1S sing 92 n n CAC CBE D1S sing 93 n n CAP CBE D1S doub 94 n n CAP CAO D1S sing 95 n n CBO CBR D1S sing 96 n n CBO CAQ D1S sing 97 n n CBR CBF D1S sing 98 n n CAO CAQ D1S doub 99 n n CAS CBH D1S doub 100 n n CAS CBK D1S sing 101 n n CBH CBL D1S sing 102 n n CAD CBF D1S sing 103 n n CBF CAR D1S doub 104 n n OAL CBK D1S doub 105 n n CBK CBJ D1S sing 106 n n CBL OAM D1S doub 107 n n CBL CBI D1S sing 108 n n CAR CBN D1S sing 109 n n CBJ CBI D1S doub 110 n n CBJ NAY D1S sing 111 n n CAG NBS D1S sing 112 n n CBI CAW D1S sing 113 n n CAH NBS D1S sing 114 n n CAE CBM D1S sing 115 n n CBN CAF D1S sing 116 n n CBN CBP D1S sing 117 n n NBS CAV D1S sing 118 n n NAY CAU D1S sing 119 z n CAW CBM D1S sing 120 n n CAT CAU D1S sing 121 e n CAT CAV D1S sing 122 n n CBM CAX D1S sing 123 n n CAX CBQ D1S sing 124 n n CBQ CBP D1S sing 125 n n CBQ OBB D1S sing 126 n n CBP OAN D1S sing 127 n n OBB CAB D1S sing 128 n n CAA H1AA D1S sing 129 n n CAA H2AA D1S sing 130 n n CAA H3AA D1S sing 131 n n CAB H1AB D1S sing 132 n n CAB H2AB D1S sing 133 n n CAB H3AB D1S sing 134 n n CAC H1AC D1S sing 135 n n CAC H2AC D1S sing 136 n n CAC H3AC D1S sing 137 n n CAD H1AD D1S sing 138 n n CAD H2AD D1S sing 139 n n CAD H3AD D1S sing 140 n n CAE H1AE D1S sing 141 n n CAE H2AE D1S sing 142 n n CAE H3AE D1S sing 143 n n CAF H1AF D1S sing 144 n n CAF H2AF D1S sing 145 n n CAF H3AF D1S sing 146 n n CAG H1AG D1S sing 147 n n CAG H2AG D1S sing 148 n n CAG H3AG D1S sing 149 n n CAH H1AH D1S sing 150 n n CAH H2AH D1S sing 151 n n CAH H3AH D1S sing 152 n n NAI H1AI D1S sing 153 e n NAI H2AI D1S sing 154 n n OAN HOAN D1S sing 155 n n CAO HAO D1S sing 156 n n CAP HAP D1S sing 157 n n CAQ HAQ D1S sing 158 n n CAR HAR D1S sing 159 n n CAS HAS D1S sing 160 n n CAT H1AT D1S sing 161 n n CAT H2AT D1S sing 162 n n CAU H1AU D1S sing 163 n n CAU H2AU D1S sing 164 n n CAV H1AV D1S sing 165 n n CAV H2AV D1S sing 166 n n CAW H1AW D1S sing 167 n n CAW H2AW D1S sing 168 n n CAX H1AX D1S sing 169 n n CAX H2AX D1S sing 170 n n NAY HNAY D1S sing 171 n n NAZ HNAZ D1S sing 172 n n CBM HBM D1S sing 173 n n CBN HBN D1S sing 174 n n CBO HBO D1S sing 175 n n CBP HBP D1S sing 176 n n CBQ HBQ D1S sing 177 n n CBR HBR D1S sing 178 n n # _atom_sites.entry_id 3Q5J _atom_sites.fract_transf_matrix[1][1] 0.00895 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00895 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020416 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 D1S A 1 214 1 D1S D1S . C 3 HOH A 1 215 2 HOH HOH . C 3 HOH A 2 216 4 HOH HOH . C 3 HOH A 3 217 5 HOH HOH . C 3 HOH A 4 218 6 HOH HOH . C 3 HOH A 5 219 7 HOH HOH . C 3 HOH A 6 220 8 HOH HOH . C 3 HOH A 7 221 10 HOH HOH . C 3 HOH A 8 222 12 HOH HOH . C 3 HOH A 9 223 14 HOH HOH . C 3 HOH A 10 224 16 HOH HOH . C 3 HOH A 11 225 17 HOH HOH . C 3 HOH A 12 226 19 HOH HOH . C 3 HOH A 13 227 20 HOH HOH . C 3 HOH A 14 228 21 HOH HOH . C 3 HOH A 15 229 22 HOH HOH . C 3 HOH A 16 230 23 HOH HOH . C 3 HOH A 17 231 24 HOH HOH . C 3 HOH A 18 232 27 HOH HOH . C 3 HOH A 19 233 31 HOH HOH . C 3 HOH A 20 234 32 HOH HOH . C 3 HOH A 21 235 33 HOH HOH . C 3 HOH A 22 236 34 HOH HOH . C 3 HOH A 23 237 35 HOH HOH . C 3 HOH A 24 238 36 HOH HOH . C 3 HOH A 25 239 37 HOH HOH . C 3 HOH A 26 240 38 HOH HOH . C 3 HOH A 27 241 39 HOH HOH . C 3 HOH A 28 242 40 HOH HOH . C 3 HOH A 29 243 41 HOH HOH . C 3 HOH A 30 244 42 HOH HOH . C 3 HOH A 31 245 43 HOH HOH . C 3 HOH A 32 246 44 HOH HOH . C 3 HOH A 33 247 45 HOH HOH . C 3 HOH A 34 248 46 HOH HOH . C 3 HOH A 35 249 47 HOH HOH . C 3 HOH A 36 250 48 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA D1S . . . B 2 -6.2 20.197 6.185 1 43.39 ? CAA D1S 214 A 1 HETATM 2 C CAB D1S . . . B 2 -8.341 21.054 15.2 1 70.13 ? CAB D1S 214 A 1 HETATM 3 C CAC D1S . . . B 2 -11.783 19.729 7.767 1 31.37 ? CAC D1S 214 A 1 HETATM 4 C CAD D1S . . . B 2 -7.056 24.627 9.493 1 38.99 ? CAD D1S 214 A 1 HETATM 5 C CAE D1S . . . B 2 -10.453 21.018 11.734 1 44.77 ? CAE D1S 214 A 1 HETATM 6 C CAF D1S . . . B 2 -5.105 24.676 12.488 1 44.19 ? CAF D1S 214 A 1 HETATM 7 C CAG D1S . . . B 2 -13.711 29.037 11.161 1 86.54 ? CAG D1S 214 A 1 HETATM 8 C CAH D1S . . . B 2 -13.9 26.647 11.565 1 49.37 ? CAH D1S 214 A 1 HETATM 9 N NAI D1S . . . B 2 -3.305 24.178 6.479 1 34.27 ? NAI D1S 214 A 1 HETATM 10 O OAJ D1S . . . B 2 -3.284 23.255 8.545 1 37.62 ? OAJ D1S 214 A 1 HETATM 11 O OAK D1S . . . B 2 -12.526 21.911 5.972 1 44.23 ? OAK D1S 214 A 1 HETATM 12 O OAL D1S . . . B 2 -9.867 26.712 9.784 1 51.67 ? OAL D1S 214 A 1 HETATM 13 O OAM D1S . . . B 2 -12.668 22.285 10.131 1 47.29 ? OAM D1S 214 A 1 HETATM 14 O OAN D1S . . . B 2 -6.855 23.673 14.498 1 41.22 ? OAN D1S 214 A 1 HETATM 15 C CAO D1S . . . B 2 -8.953 20.574 8.599 1 62.24 ? CAO D1S 214 A 1 HETATM 16 C CAP D1S . . . B 2 -9.812 21.299 7.775 1 44.22 ? CAP D1S 214 A 1 HETATM 17 C CAQ D1S . . . B 2 -7.576 20.825 8.613 1 53.79 ? CAQ D1S 214 A 1 HETATM 18 C CAR D1S . . . B 2 -5.873 22.902 10.94 1 42.48 ? CAR D1S 214 A 1 HETATM 19 C CAS D1S . . . B 2 -10.999 25.076 8.736 1 29.17 ? CAS D1S 214 A 1 HETATM 20 C CAT D1S . . . B 2 -11.514 27.708 12.738 1 61.07 ? CAT D1S 214 A 1 HETATM 21 C CAU D1S . . . B 2 -11.126 26.303 13.229 1 51.88 ? CAU D1S 214 A 1 HETATM 22 C CAV D1S . . . B 2 -12.906 28.11 13.246 1 92.56 ? CAV D1S 214 A 1 HETATM 23 C CAW D1S . . . B 2 -11.673 23.116 12.572 1 34.58 ? CAW D1S 214 A 1 HETATM 24 C CAX D1S . . . B 2 -9.179 22.876 12.91 1 38.18 ? CAX D1S 214 A 1 HETATM 25 N NAY D1S . . . B 2 -10.266 25.672 12.225 1 56.28 ? NAY D1S 214 A 1 HETATM 26 N NAZ D1S . . . B 2 -12.189 23.394 7.636 1 34.69 ? NAZ D1S 214 A 1 HETATM 27 O OBA D1S . . . B 2 -6.717 21.514 6.414 1 62.56 ? OBA D1S 214 A 1 HETATM 28 O OBB D1S . . . B 2 -7.973 20.76 13.846 1 53.53 ? OBB D1S 214 A 1 HETATM 29 O OBC D1S . . . B 2 -5.253 23.438 7.483 1 44.81 ? OBC D1S 214 A 1 HETATM 30 C CBD D1S . . . B 2 -3.898 23.609 7.536 1 52.69 ? CBD D1S 214 A 1 HETATM 31 C CBE D1S . . . B 2 -11.199 21.134 7.793 1 34.08 ? CBE D1S 214 A 1 HETATM 32 C CBF D1S . . . B 2 -6.244 23.33 9.678 1 36.31 ? CBF D1S 214 A 1 HETATM 33 C CBG D1S . . . B 2 -12.03 22.193 7.063 1 54.93 ? CBG D1S 214 A 1 HETATM 34 C CBH D1S . . . B 2 -11.699 23.872 8.796 1 47.67 ? CBH D1S 214 A 1 HETATM 35 C CBI D1S . . . B 2 -11.473 23.868 11.23 1 45.68 ? CBI D1S 214 A 1 HETATM 36 C CBJ D1S . . . B 2 -10.78 25.09 11.134 1 38.29 ? CBJ D1S 214 A 1 HETATM 37 C CBK D1S . . . B 2 -10.51 25.667 9.888 1 70.27 ? CBK D1S 214 A 1 HETATM 38 C CBL D1S . . . B 2 -11.991 23.315 10.049 1 41.78 ? CBL D1S 214 A 1 HETATM 39 C CBM D1S . . . B 2 -10.518 22.111 12.816 1 46.31 ? CBM D1S 214 A 1 HETATM 40 C CBN D1S . . . B 2 -6.282 23.747 12.15 1 32.52 ? CBN D1S 214 A 1 HETATM 41 C CBO D1S . . . B 2 -7.004 21.825 7.817 1 56.57 ? CBO D1S 214 A 1 HETATM 42 C CBP D1S . . . B 2 -6.651 22.838 13.335 1 44.2 ? CBP D1S 214 A 1 HETATM 43 C CBQ D1S . . . B 2 -7.908 21.975 13.03 1 47.45 ? CBQ D1S 214 A 1 HETATM 44 C CBR D1S . . . B 2 -5.824 22.52 8.463 1 39.62 ? CBR D1S 214 A 1 HETATM 45 N NBS D1S . . . B 2 -13.914 27.99 12.177 1 112.76 ? NBS D1S 214 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 45 #