data_3Q5K # _model_server_result.job_id XOQU8KhJ3HL9I8gdTu-yQA _model_server_result.datetime_utc '2024-11-23 07:20:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3q5k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":214}' # _entry.id 3Q5K # _exptl.entry_id 3Q5K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 440.482 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[6,6-dimethyl-4-oxo-3-(trifluoromethyl)-4,5,6,7-tetrahydro-1H-indazol-1-yl]-2-{[2-(methylsulfanyl)ethyl]amino}benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3Q5K _cell.length_a 73.258 _cell.length_b 73.258 _cell.length_c 213.604 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3Q5K _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_555 x,x-y,-z+1/3 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 0 0 71.201333 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H23 F3 N4 O2 S' _chem_comp.formula_weight 440.482 _chem_comp.id D1U _chem_comp.mon_nstd_flag . _chem_comp.name 4-[6,6-dimethyl-4-oxo-3-(trifluoromethyl)-4,5,6,7-tetrahydro-1H-indazol-1-yl]-2-{[2-(methylsulfanyl)ethyl]amino}benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA SAS D1U sing 83 n n CAA HAA D1U sing 84 n n CAA HAAA D1U sing 85 n n CAA HAAB D1U sing 86 n n CBC CAB D1U sing 87 n n CAB HAB D1U sing 88 n n CAB HABA D1U sing 89 n n CAB HABB D1U sing 90 n n CBC CAC D1U sing 91 n n CAC HAC D1U sing 92 n n CAC HACA D1U sing 93 n n CAC HACB D1U sing 94 n n NAD CAT D1U sing 95 n n NAD HNAD D1U sing 96 n n NAD HNAA D1U sing 97 n n CAT OAE D1U doub 98 n n CAU OAF D1U doub 99 n n CBD FAG D1U sing 100 n n FAH CBD D1U sing 101 n n FAI CBD D1U sing 102 n n CAK CAJ D1U doub 103 n y CAJ CAV D1U sing 104 n y CAJ HAJ D1U sing 105 n n CAX CAK D1U sing 106 n y CAK HAK D1U sing 107 n n CAW CAL D1U sing 108 n y CAL CAV D1U doub 109 n y CAL HAL D1U sing 110 n n NAR CAM D1U sing 111 n n CAN CAM D1U sing 112 n n CAM HAM D1U sing 113 n n CAM HAMA D1U sing 114 n n SAS CAN D1U sing 115 n n CAN HAN D1U sing 116 n n CAN HANA D1U sing 117 n n CAU CAO D1U sing 118 n n CBC CAO D1U sing 119 n n CAO HAO D1U sing 120 n n CAO HAOA D1U sing 121 n n CAY CAP D1U sing 122 n n CAP CBC D1U sing 123 n n CAP HAP D1U sing 124 n n CAP HAPA D1U sing 125 n n NAQ NBB D1U sing 126 n y NAQ CAZ D1U doub 127 n y NAR CAW D1U sing 128 n n NAR HNAR D1U sing 129 n n CAT CAX D1U sing 130 n n CBA CAU D1U sing 131 n n CAV NBB D1U sing 132 n y CAX CAW D1U doub 133 n y NBB CAY D1U sing 134 n y CAY CBA D1U doub 135 n y CBD CAZ D1U sing 136 n n CAZ CBA D1U sing 137 n y # _atom_sites.entry_id 3Q5K _atom_sites.fract_transf_matrix[1][1] 0.01365 _atom_sites.fract_transf_matrix[1][2] 0.007881 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015762 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004682 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 D1U A 1 214 1 D1U DRG . C 3 HOH A 1 215 6 HOH HOH . C 3 HOH A 2 216 7 HOH HOH . C 3 HOH A 3 217 8 HOH HOH . C 3 HOH A 4 218 9 HOH HOH . C 3 HOH A 5 219 11 HOH HOH . C 3 HOH A 6 220 12 HOH HOH . C 3 HOH A 7 221 13 HOH HOH . C 3 HOH A 8 222 14 HOH HOH . C 3 HOH A 9 223 16 HOH HOH . C 3 HOH A 10 224 17 HOH HOH . C 3 HOH A 11 225 18 HOH HOH . C 3 HOH A 12 226 20 HOH HOH . C 3 HOH A 13 227 21 HOH HOH . C 3 HOH A 14 228 22 HOH HOH . C 3 HOH A 15 229 23 HOH HOH . C 3 HOH A 16 230 24 HOH HOH . C 3 HOH A 17 231 25 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA D1U . . . B 2 -9.904 -2.997 9.931 1 95.81 ? CAA D1U 214 A 1 HETATM 2 C CAB D1U . . . B 2 -15.629 -5.054 18.833 1 57.25 ? CAB D1U 214 A 1 HETATM 3 C CAC D1U . . . B 2 -14.289 -3.076 18.063 1 49.5 ? CAC D1U 214 A 1 HETATM 4 N NAD D1U . . . B 2 -12.507 -8.358 11.567 1 48.16 ? NAD D1U 214 A 1 HETATM 5 O OAE D1U . . . B 2 -10.755 -7.083 12.154 1 43.29 ? OAE D1U 214 A 1 HETATM 6 O OAF D1U . . . B 2 -17.249 -0.774 17.298 1 55.07 ? OAF D1U 214 A 1 HETATM 7 F FAG D1U . . . B 2 -16.227 0.895 15.151 1 69.23 ? FAG D1U 214 A 1 HETATM 8 F FAH D1U . . . B 2 -16.073 0.358 13.133 1 69.38 ? FAH D1U 214 A 1 HETATM 9 F FAI D1U . . . B 2 -17.982 0.103 14.136 1 75.2 ? FAI D1U 214 A 1 HETATM 10 C CAJ D1U . . . B 2 -15.092 -5.491 13.493 1 52.77 ? CAJ D1U 214 A 1 HETATM 11 C CAK D1U . . . B 2 -14.228 -6.476 13.008 1 41.57 ? CAK D1U 214 A 1 HETATM 12 C CAL D1U . . . B 2 -13.314 -3.876 13.261 1 64.36 ? CAL D1U 214 A 1 HETATM 13 C CAM D1U . . . B 2 -10.562 -3.303 12.88 1 94.51 ? CAM D1U 214 A 1 HETATM 14 C CAN D1U . . . B 2 -9.06 -3.344 12.583 1 83.78 ? CAN D1U 214 A 1 HETATM 15 C CAO D1U . . . B 2 -16.816 -3.006 18.038 1 54.8 ? CAO D1U 214 A 1 HETATM 16 C CAP D1U . . . B 2 -15.596 -4.444 16.417 1 58.56 ? CAP D1U 214 A 1 HETATM 17 N NAQ D1U . . . B 2 -15.577 -2.116 13.644 1 65.53 ? NAQ D1U 214 A 1 HETATM 18 N NAR D1U . . . B 2 -11.203 -4.553 12.418 1 56.52 ? NAR D1U 214 A 1 HETATM 19 S SAS D1U . . . B 2 -8.68 -3.888 10.876 1 135.75 ? SAS D1U 214 A 1 HETATM 20 C CAT D1U . . . B 2 -11.965 -7.252 12.082 1 68.58 ? CAT D1U 214 A 1 HETATM 21 C CAU D1U . . . B 2 -16.846 -1.889 16.982 1 57.29 ? CAU D1U 214 A 1 HETATM 22 C CAV D1U . . . B 2 -14.635 -4.176 13.573 1 49.01 ? CAV D1U 214 A 1 HETATM 23 C CAW D1U . . . B 2 -12.461 -4.852 12.753 1 108.59 ? CAW D1U 214 A 1 HETATM 24 C CAX D1U . . . B 2 -12.924 -6.159 12.626 1 37.1 ? CAX D1U 214 A 1 HETATM 25 C CAY D1U . . . B 2 -15.743 -3.288 15.422 1 51.05 ? CAY D1U 214 A 1 HETATM 26 C CAZ D1U . . . B 2 -16.208 -1.37 14.54 1 76.88 ? CAZ D1U 214 A 1 HETATM 27 C CBA D1U . . . B 2 -16.359 -2.091 15.704 1 51.1 ? CBA D1U 214 A 1 HETATM 28 N NBB D1U . . . B 2 -15.355 -3.222 14.147 1 52.72 ? NBB D1U 214 A 1 HETATM 29 C CBC D1U . . . B 2 -15.578 -3.895 17.845 1 74.65 ? CBC D1U 214 A 1 HETATM 30 C CBD D1U . . . B 2 -16.663 0.041 14.251 1 71.39 ? CBD D1U 214 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 30 #