data_3Q6K # _model_server_result.job_id 86Lxt50VDr6eRtOGOWDTLg _model_server_result.datetime_utc '2025-01-25 14:05:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3q6k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":383}' # _entry.id 3Q6K # _exptl.entry_id 3Q6K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 176.215 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description SEROTONIN _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3Q6K _cell.length_a 120.012 _cell.length_b 120.012 _cell.length_c 244.747 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3Q6K _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 97 A CYS 97 1_555 A SG CYS 168 A CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf2 A SG CYS 301 A CYS 301 1_555 A SG CYS 377 A CYS 377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? disulf ? disulf3 B SG CYS 97 B CYS 97 1_555 B SG CYS 168 B CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? disulf ? disulf4 B SG CYS 301 B CYS 301 1_555 B SG CYS 377 B CYS 377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? # _chem_comp.formula 'C10 H12 N2 O' _chem_comp.formula_weight 176.215 _chem_comp.id SRO _chem_comp.mon_nstd_flag . _chem_comp.name SEROTONIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3-(2-AMINOETHYL)-1H-INDOL-5-OL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OH CZ3 SRO sing 310 n n OH HOH SRO sing 311 n n CZ3 CE3 SRO doub 312 n y CZ3 CH2 SRO sing 313 n y CH2 CZ2 SRO doub 314 n y CH2 HH2 SRO sing 315 n n CZ2 CE2 SRO sing 316 n y CZ2 HZ2 SRO sing 317 n n CE2 NE1 SRO sing 318 n y CE2 CD2 SRO doub 319 n y NE1 CD1 SRO sing 320 n y NE1 HNE1 SRO sing 321 n n CD1 CG SRO doub 322 n y CD1 HD1 SRO sing 323 n n CG CB SRO sing 324 n n CG CD2 SRO sing 325 n y CD2 CE3 SRO sing 326 n y CE3 HE3 SRO sing 327 n n CB CA SRO sing 328 n n CB HB1 SRO sing 329 n n CB HB2 SRO sing 330 n n CA NZ SRO sing 331 n n CA HA1 SRO sing 332 n n CA HA2 SRO sing 333 n n NZ HNZ1 SRO sing 334 n n NZ HNZ2 SRO sing 335 n n # _atom_sites.entry_id 3Q6K _atom_sites.fract_transf_matrix[1][1] 0.008333 _atom_sites.fract_transf_matrix[1][2] 0.004811 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009622 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004086 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CIT A 1 382 1 CIT CIT . D 3 SRO A 1 383 145 SRO SRO . E 2 CIT B 1 382 1 CIT CIT . F 3 SRO B 1 383 145 SRO SRO . G 4 HOH A 1 384 2 HOH HOH . G 4 HOH A 2 385 4 HOH HOH . G 4 HOH A 3 386 8 HOH HOH . G 4 HOH A 4 387 13 HOH HOH . G 4 HOH A 5 388 15 HOH HOH . G 4 HOH A 6 389 16 HOH HOH . G 4 HOH A 7 390 17 HOH HOH . G 4 HOH A 8 391 19 HOH HOH . G 4 HOH A 9 392 20 HOH HOH . G 4 HOH A 10 393 21 HOH HOH . G 4 HOH A 11 394 22 HOH HOH . G 4 HOH A 12 395 25 HOH HOH . G 4 HOH A 13 396 29 HOH HOH . G 4 HOH A 14 397 30 HOH HOH . G 4 HOH A 15 398 31 HOH HOH . G 4 HOH A 16 399 32 HOH HOH . G 4 HOH A 17 400 35 HOH HOH . G 4 HOH A 18 401 36 HOH HOH . G 4 HOH A 19 402 41 HOH HOH . G 4 HOH A 20 403 48 HOH HOH . G 4 HOH A 21 404 49 HOH HOH . G 4 HOH A 22 405 50 HOH HOH . G 4 HOH A 23 406 51 HOH HOH . G 4 HOH A 24 407 54 HOH HOH . G 4 HOH A 25 408 57 HOH HOH . G 4 HOH A 26 409 60 HOH HOH . G 4 HOH A 27 410 61 HOH HOH . G 4 HOH A 28 411 67 HOH HOH . G 4 HOH A 29 412 68 HOH HOH . G 4 HOH A 30 413 69 HOH HOH . G 4 HOH A 31 414 71 HOH HOH . G 4 HOH A 32 415 72 HOH HOH . H 4 HOH B 1 384 3 HOH HOH . H 4 HOH B 2 385 5 HOH HOH . H 4 HOH B 3 386 6 HOH HOH . H 4 HOH B 4 387 7 HOH HOH . H 4 HOH B 5 388 10 HOH HOH . H 4 HOH B 6 389 11 HOH HOH . H 4 HOH B 7 390 12 HOH HOH . H 4 HOH B 8 391 14 HOH HOH . H 4 HOH B 9 392 18 HOH HOH . H 4 HOH B 10 393 23 HOH HOH . H 4 HOH B 11 394 24 HOH HOH . H 4 HOH B 12 395 26 HOH HOH . H 4 HOH B 13 396 33 HOH HOH . H 4 HOH B 14 397 34 HOH HOH . H 4 HOH B 15 398 38 HOH HOH . H 4 HOH B 16 399 40 HOH HOH . H 4 HOH B 17 400 42 HOH HOH . H 4 HOH B 18 401 45 HOH HOH . H 4 HOH B 19 402 46 HOH HOH . H 4 HOH B 20 403 47 HOH HOH . H 4 HOH B 21 404 52 HOH HOH . H 4 HOH B 22 405 55 HOH HOH . H 4 HOH B 23 406 56 HOH HOH . H 4 HOH B 24 407 58 HOH HOH . H 4 HOH B 25 408 59 HOH HOH . H 4 HOH B 26 409 62 HOH HOH . H 4 HOH B 27 410 63 HOH HOH . H 4 HOH B 28 411 70 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OH SRO . . . F 3 38.045 -27.286 -11.339 1 67.87 ? OH SRO 383 B 1 HETATM 2 C CZ3 SRO . . . F 3 37.513 -26.188 -11.958 1 67.74 ? CZ3 SRO 383 B 1 HETATM 3 C CH2 SRO . . . F 3 36.349 -26.324 -12.742 1 66.34 ? CH2 SRO 383 B 1 HETATM 4 C CZ2 SRO . . . F 3 35.819 -25.197 -13.379 1 65.28 ? CZ2 SRO 383 B 1 HETATM 5 C CE2 SRO . . . F 3 36.479 -23.971 -13.198 1 65.53 ? CE2 SRO 383 B 1 HETATM 6 N NE1 SRO . . . F 3 36.276 -22.691 -13.626 1 64.37 ? NE1 SRO 383 B 1 HETATM 7 C CD1 SRO . . . F 3 37.255 -21.878 -13.127 1 62.4 ? CD1 SRO 383 B 1 HETATM 8 C CG SRO . . . F 3 38.118 -22.637 -12.355 1 62 ? CG SRO 383 B 1 HETATM 9 C CD2 SRO . . . F 3 37.625 -23.952 -12.401 1 65.5 ? CD2 SRO 383 B 1 HETATM 10 C CE3 SRO . . . F 3 38.097 -25.028 -11.816 1 66.27 ? CE3 SRO 383 B 1 HETATM 11 C CB SRO . . . F 3 39.325 -22.103 -11.62 1 61.01 ? CB SRO 383 B 1 HETATM 12 C CA SRO . . . F 3 40.564 -22.951 -11.902 1 60.19 ? CA SRO 383 B 1 HETATM 13 N NZ SRO . . . F 3 41.303 -23.214 -10.69 1 58.93 ? NZ SRO 383 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 13 #