data_3Q6Y
#
_model_server_result.job_id            0_YMFIy57HMmk6Ky28TczA 
_model_server_result.datetime_utc      '2025-01-10 11:45:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3q6y 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":4001}' 
#
_entry.id    3Q6Y 
#
_exptl.entry_id    3Q6Y 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              78.133 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIMETHYL SULFOXIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          108.6 
_cell.angle_gamma         90 
_cell.entry_id            3Q6Y 
_cell.length_a            45.36 
_cell.length_b            72.79 
_cell.length_c            51.79 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3Q6Y 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   disulf 
_struct_conn.details                        ? 
_struct_conn.id                             disulf1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             255 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              255 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            A 
_struct_conn.ptnr2_label_atom_id            SG 
_struct_conn.ptnr2_label_comp_id            CYS 
_struct_conn.ptnr2_label_seq_id             290 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             CYS 
_struct_conn.ptnr2_auth_seq_id              290 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.048 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C2 H6 O S' 
_chem_comp.formula_weight    78.133 
_chem_comp.id                DMS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIMETHYL SULFOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O DMS doub 120 n n 
S C1 DMS sing 121 n n 
S C2 DMS sing 122 n n 
C1 H11 DMS sing 123 n n 
C1 H12 DMS sing 124 n n 
C1 H13 DMS sing 125 n n 
C2 H21 DMS sing 126 n n 
C2 H22 DMS sing 127 n n 
C2 H23 DMS sing 128 n n 
#
_atom_sites.entry_id                     3Q6Y 
_atom_sites.fract_transf_matrix[1][1]    0.022046 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.007419 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013738 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.020373 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 DMS A 1 4001 4001 DMS DMS . 
C 3 S47 A 1 5001 5001 S47 S47 . 
D 4 GOL A 1 6001 6001 GOL GOL . 
E 4 GOL A 1 6003 6003 GOL GOL . 
F 5 1PE A 1 7001 7001 1PE 1PE . 
G 6 HOH A 1 8001 8001 HOH HOH . 
G 6 HOH A 2 8002 8002 HOH HOH . 
G 6 HOH A 3 8003 8003 HOH HOH . 
G 6 HOH A 4 8004 8004 HOH HOH . 
G 6 HOH A 5 8005 8005 HOH HOH . 
G 6 HOH A 6 8006 8006 HOH HOH . 
G 6 HOH A 7 8007 8007 HOH HOH . 
G 6 HOH A 8 8008 8008 HOH HOH . 
G 6 HOH A 9 8009 8009 HOH HOH . 
G 6 HOH A 10 8010 8010 HOH HOH . 
G 6 HOH A 11 8011 8011 HOH HOH . 
G 6 HOH A 12 8012 8012 HOH HOH . 
G 6 HOH A 13 8013 8013 HOH HOH . 
G 6 HOH A 14 8014 8014 HOH HOH . 
G 6 HOH A 15 8015 8015 HOH HOH . 
G 6 HOH A 16 8016 8016 HOH HOH . 
G 6 HOH A 17 8017 8017 HOH HOH . 
G 6 HOH A 18 8018 8018 HOH HOH . 
G 6 HOH A 19 8019 8019 HOH HOH . 
G 6 HOH A 20 8020 8020 HOH HOH . 
G 6 HOH A 21 8021 8021 HOH HOH . 
G 6 HOH A 22 8022 8022 HOH HOH . 
G 6 HOH A 23 8023 8023 HOH HOH . 
G 6 HOH A 24 8024 8024 HOH HOH . 
G 6 HOH A 25 8025 8025 HOH HOH . 
G 6 HOH A 26 8026 8026 HOH HOH . 
G 6 HOH A 27 8027 8027 HOH HOH . 
G 6 HOH A 28 8028 8028 HOH HOH . 
G 6 HOH A 29 8029 8029 HOH HOH . 
G 6 HOH A 30 8030 8030 HOH HOH . 
G 6 HOH A 31 8031 8031 HOH HOH . 
G 6 HOH A 32 8032 8032 HOH HOH . 
G 6 HOH A 33 8033 8033 HOH HOH . 
G 6 HOH A 34 8034 8034 HOH HOH . 
G 6 HOH A 35 8035 8035 HOH HOH . 
G 6 HOH A 36 8036 8036 HOH HOH . 
G 6 HOH A 37 8037 8037 HOH HOH . 
G 6 HOH A 38 8038 8038 HOH HOH . 
G 6 HOH A 39 8039 8039 HOH HOH . 
G 6 HOH A 40 8040 8040 HOH HOH . 
G 6 HOH A 41 8041 8041 HOH HOH . 
G 6 HOH A 42 8042 8042 HOH HOH . 
G 6 HOH A 43 8043 8043 HOH HOH . 
G 6 HOH A 44 8044 8044 HOH HOH . 
G 6 HOH A 45 8045 8045 HOH HOH . 
G 6 HOH A 46 8046 8046 HOH HOH . 
G 6 HOH A 47 8047 8047 HOH HOH . 
G 6 HOH A 48 8048 8048 HOH HOH . 
G 6 HOH A 49 8049 8049 HOH HOH . 
G 6 HOH A 50 8050 8050 HOH HOH . 
G 6 HOH A 51 8051 8051 HOH HOH . 
G 6 HOH A 52 8052 8052 HOH HOH . 
G 6 HOH A 53 8053 8053 HOH HOH . 
G 6 HOH A 54 8054 8054 HOH HOH . 
G 6 HOH A 55 8055 8055 HOH HOH . 
G 6 HOH A 56 8056 8056 HOH HOH . 
G 6 HOH A 57 8057 8057 HOH HOH . 
G 6 HOH A 58 8058 8058 HOH HOH . 
G 6 HOH A 59 8059 8059 HOH HOH . 
G 6 HOH A 60 8060 8060 HOH HOH . 
G 6 HOH A 61 8061 8061 HOH HOH . 
G 6 HOH A 62 8062 8062 HOH HOH . 
G 6 HOH A 63 8063 8063 HOH HOH . 
G 6 HOH A 64 8064 8064 HOH HOH . 
G 6 HOH A 65 8065 8065 HOH HOH . 
G 6 HOH A 66 8066 8066 HOH HOH . 
G 6 HOH A 67 8067 8067 HOH HOH . 
G 6 HOH A 68 8068 8068 HOH HOH . 
G 6 HOH A 69 8069 8069 HOH HOH . 
G 6 HOH A 70 8070 8070 HOH HOH . 
G 6 HOH A 71 8071 8071 HOH HOH . 
G 6 HOH A 72 8072 8072 HOH HOH . 
G 6 HOH A 73 8073 8073 HOH HOH . 
G 6 HOH A 74 8074 8074 HOH HOH . 
G 6 HOH A 75 8075 8075 HOH HOH . 
G 6 HOH A 76 8076 8076 HOH HOH . 
G 6 HOH A 77 8077 8077 HOH HOH . 
G 6 HOH A 78 8078 8078 HOH HOH . 
G 6 HOH A 79 8079 8079 HOH HOH . 
G 6 HOH A 80 8080 8080 HOH HOH . 
G 6 HOH A 81 8081 8081 HOH HOH . 
G 6 HOH A 82 8082 8082 HOH HOH . 
G 6 HOH A 83 8083 8083 HOH HOH . 
G 6 HOH A 84 8084 8084 HOH HOH . 
G 6 HOH A 85 8085 8085 HOH HOH . 
G 6 HOH A 86 8086 8086 HOH HOH . 
G 6 HOH A 87 8087 8087 HOH HOH . 
G 6 HOH A 88 8088 8088 HOH HOH . 
G 6 HOH A 89 8089 8089 HOH HOH . 
G 6 HOH A 90 8090 8090 HOH HOH . 
G 6 HOH A 91 8091 8091 HOH HOH . 
G 6 HOH A 92 8092 8092 HOH HOH . 
G 6 HOH A 93 8093 8093 HOH HOH . 
G 6 HOH A 94 8094 8094 HOH HOH . 
G 6 HOH A 95 8095 8095 HOH HOH . 
G 6 HOH A 96 8096 8096 HOH HOH . 
G 6 HOH A 97 8097 8097 HOH HOH . 
G 6 HOH A 98 8098 8098 HOH HOH . 
G 6 HOH A 99 8099 8099 HOH HOH . 
G 6 HOH A 100 8100 8100 HOH HOH . 
G 6 HOH A 101 8101 8101 HOH HOH . 
G 6 HOH A 102 8102 8102 HOH HOH . 
G 6 HOH A 103 8103 8103 HOH HOH . 
G 6 HOH A 104 8104 8104 HOH HOH . 
G 6 HOH A 105 8105 8105 HOH HOH . 
G 6 HOH A 106 8106 8106 HOH HOH . 
G 6 HOH A 107 8107 8107 HOH HOH . 
G 6 HOH A 108 8108 8108 HOH HOH . 
G 6 HOH A 109 8109 8109 HOH HOH . 
G 6 HOH A 110 8110 8110 HOH HOH . 
G 6 HOH A 111 8111 8111 HOH HOH . 
G 6 HOH A 112 8112 8112 HOH HOH . 
G 6 HOH A 113 8113 8113 HOH HOH . 
G 6 HOH A 114 8114 8114 HOH HOH . 
G 6 HOH A 115 8115 8115 HOH HOH . 
G 6 HOH A 116 8116 8116 HOH HOH . 
G 6 HOH A 117 8117 8117 HOH HOH . 
G 6 HOH A 118 8118 8118 HOH HOH . 
G 6 HOH A 119 8119 8119 HOH HOH . 
G 6 HOH A 120 8120 8120 HOH HOH . 
G 6 HOH A 121 8121 8121 HOH HOH . 
G 6 HOH A 122 8122 8122 HOH HOH . 
G 6 HOH A 123 8123 8123 HOH HOH . 
G 6 HOH A 124 8124 8124 HOH HOH . 
G 6 HOH A 125 8125 8125 HOH HOH . 
G 6 HOH A 126 8126 8126 HOH HOH . 
G 6 HOH A 127 8127 8127 HOH HOH . 
G 6 HOH A 128 8128 8128 HOH HOH . 
G 6 HOH A 129 8129 8129 HOH HOH . 
G 6 HOH A 130 8130 8130 HOH HOH . 
G 6 HOH A 131 8131 8131 HOH HOH . 
G 6 HOH A 132 8132 8132 HOH HOH . 
G 6 HOH A 133 8133 8133 HOH HOH . 
G 6 HOH A 134 8134 8134 HOH HOH . 
G 6 HOH A 135 8135 8135 HOH HOH . 
G 6 HOH A 136 8136 8136 HOH HOH . 
G 6 HOH A 137 8137 8137 HOH HOH . 
G 6 HOH A 138 8138 8138 HOH HOH . 
G 6 HOH A 139 8139 8139 HOH HOH . 
G 6 HOH A 140 8140 8140 HOH HOH . 
G 6 HOH A 141 8141 8141 HOH HOH . 
G 6 HOH A 142 8142 8142 HOH HOH . 
G 6 HOH A 143 8143 8143 HOH HOH . 
G 6 HOH A 144 8145 8145 HOH HOH . 
G 6 HOH A 145 8146 8146 HOH HOH . 
G 6 HOH A 146 8147 8147 HOH HOH . 
G 6 HOH A 147 8148 8148 HOH HOH . 
G 6 HOH A 148 8149 8149 HOH HOH . 
G 6 HOH A 149 8151 8151 HOH HOH . 
G 6 HOH A 150 8152 8152 HOH HOH . 
G 6 HOH A 151 8153 8153 HOH HOH . 
G 6 HOH A 152 8154 8154 HOH HOH . 
G 6 HOH A 153 8155 8155 HOH HOH . 
G 6 HOH A 154 8156 8156 HOH HOH . 
G 6 HOH A 155 8157 8157 HOH HOH . 
G 6 HOH A 156 8159 8159 HOH HOH . 
G 6 HOH A 157 8160 8160 HOH HOH . 
G 6 HOH A 158 8161 8161 HOH HOH . 
G 6 HOH A 159 8163 8163 HOH HOH . 
G 6 HOH A 160 8164 8164 HOH HOH . 
G 6 HOH A 161 8166 8166 HOH HOH . 
G 6 HOH A 162 8168 8168 HOH HOH . 
G 6 HOH A 163 8169 8169 HOH HOH . 
G 6 HOH A 164 8170 8170 HOH HOH . 
G 6 HOH A 165 8171 8171 HOH HOH . 
G 6 HOH A 166 8172 8172 HOH HOH . 
G 6 HOH A 167 8173 8173 HOH HOH . 
G 6 HOH A 168 8174 8174 HOH HOH . 
G 6 HOH A 169 8175 8175 HOH HOH . 
G 6 HOH A 170 8176 8176 HOH HOH . 
G 6 HOH A 171 8177 8177 HOH HOH . 
G 6 HOH A 172 8178 8178 HOH HOH . 
G 6 HOH A 173 8179 8179 HOH HOH . 
G 6 HOH A 174 8180 8180 HOH HOH . 
G 6 HOH A 175 8181 8181 HOH HOH . 
G 6 HOH A 176 8183 8183 HOH HOH . 
G 6 HOH A 177 8184 8184 HOH HOH . 
G 6 HOH A 178 8185 8185 HOH HOH . 
G 6 HOH A 179 8187 8187 HOH HOH . 
G 6 HOH A 180 8188 8188 HOH HOH . 
G 6 HOH A 181 8189 8189 HOH HOH . 
G 6 HOH A 182 8190 8190 HOH HOH . 
G 6 HOH A 183 8192 8192 HOH HOH . 
G 6 HOH A 184 8193 8193 HOH HOH . 
G 6 HOH A 185 8194 8194 HOH HOH . 
G 6 HOH A 186 8195 8195 HOH HOH . 
G 6 HOH A 187 8196 8196 HOH HOH . 
G 6 HOH A 188 8197 8197 HOH HOH . 
G 6 HOH A 189 8200 8200 HOH HOH . 
G 6 HOH A 190 8201 8201 HOH HOH . 
G 6 HOH A 191 8202 8202 HOH HOH . 
G 6 HOH A 192 8203 8203 HOH HOH . 
G 6 HOH A 193 8204 8204 HOH HOH . 
G 6 HOH A 194 8206 8206 HOH HOH . 
G 6 HOH A 195 8207 8207 HOH HOH . 
G 6 HOH A 196 8208 8208 HOH HOH . 
G 6 HOH A 197 8209 8209 HOH HOH . 
G 6 HOH A 198 8210 8210 HOH HOH . 
G 6 HOH A 199 8211 8211 HOH HOH . 
G 6 HOH A 200 8213 8213 HOH HOH . 
G 6 HOH A 201 8214 8214 HOH HOH . 
G 6 HOH A 202 8215 8215 HOH HOH . 
G 6 HOH A 203 8216 8216 HOH HOH . 
G 6 HOH A 204 8217 8217 HOH HOH . 
G 6 HOH A 205 8218 8218 HOH HOH . 
G 6 HOH A 206 8219 8219 HOH HOH . 
G 6 HOH A 207 8220 8220 HOH HOH . 
G 6 HOH A 208 8221 8221 HOH HOH . 
G 6 HOH A 209 8225 8225 HOH HOH . 
G 6 HOH A 210 8226 8226 HOH HOH . 
G 6 HOH A 211 8227 8227 HOH HOH . 
G 6 HOH A 212 8228 8228 HOH HOH . 
G 6 HOH A 213 8229 8229 HOH HOH . 
G 6 HOH A 214 8232 8232 HOH HOH . 
G 6 HOH A 215 8235 8235 HOH HOH . 
G 6 HOH A 216 8237 8237 HOH HOH . 
G 6 HOH A 217 8239 8239 HOH HOH . 
G 6 HOH A 218 8240 8240 HOH HOH . 
G 6 HOH A 219 8241 8241 HOH HOH . 
G 6 HOH A 220 8242 8242 HOH HOH . 
G 6 HOH A 221 8243 8243 HOH HOH . 
G 6 HOH A 222 8244 8244 HOH HOH . 
G 6 HOH A 223 8245 8245 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S DMS . . . B 2 -4.051 2.887 6.408 1 20.55 ? S DMS 4001 A 1 
HETATM 2 O O DMS . . . B 2 -3.201 3.434 4.959 1 13.42 ? O DMS 4001 A 1 
HETATM 3 C C1 DMS . . . B 2 -3.68 1.136 6.657 1 20.16 ? C1 DMS 4001 A 1 
HETATM 4 C C2 DMS . . . B 2 -3.163 3.516 7.854 1 24.85 ? C2 DMS 4001 A 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           325 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#