data_3Q6Y # _model_server_result.job_id bcAjUnTsw1ifnGbJqzVWRg _model_server_result.datetime_utc '2025-01-10 12:09:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3q6y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":7001}' # _entry.id 3Q6Y # _exptl.entry_id 3Q6Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.278 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PENTAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.6 _cell.angle_gamma 90 _cell.entry_id 3Q6Y _cell.length_a 45.36 _cell.length_b 72.79 _cell.length_c 51.79 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3Q6Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 255 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 255 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 290 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 290 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.048 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H22 O6' _chem_comp.formula_weight 238.278 _chem_comp.id 1PE _chem_comp.mon_nstd_flag . _chem_comp.name 'PENTAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PEG400 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OH2 C12 1PE sing 1 n n OH2 HO2 1PE sing 2 n n C12 C22 1PE sing 3 n n C12 H121 1PE sing 4 n n C12 H122 1PE sing 5 n n C22 OH3 1PE sing 6 n n C22 H221 1PE sing 7 n n C22 H222 1PE sing 8 n n OH3 C23 1PE sing 9 n n C13 C23 1PE sing 10 n n C13 OH4 1PE sing 11 n n C13 H131 1PE sing 12 n n C13 H132 1PE sing 13 n n C23 H231 1PE sing 14 n n C23 H232 1PE sing 15 n n OH4 C24 1PE sing 16 n n C14 C24 1PE sing 17 n n C14 OH5 1PE sing 18 n n C14 H141 1PE sing 19 n n C14 H142 1PE sing 20 n n C24 H241 1PE sing 21 n n C24 H242 1PE sing 22 n n OH5 C25 1PE sing 23 n n C15 C25 1PE sing 24 n n C15 OH6 1PE sing 25 n n C15 H151 1PE sing 26 n n C15 H152 1PE sing 27 n n C25 H251 1PE sing 28 n n C25 H252 1PE sing 29 n n OH6 C26 1PE sing 30 n n C16 C26 1PE sing 31 n n C16 OH7 1PE sing 32 n n C16 H161 1PE sing 33 n n C16 H162 1PE sing 34 n n C26 H261 1PE sing 35 n n C26 H262 1PE sing 36 n n OH7 HO7 1PE sing 37 n n # _atom_sites.entry_id 3Q6Y _atom_sites.fract_transf_matrix[1][1] 0.022046 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007419 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013738 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020373 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS A 1 4001 4001 DMS DMS . C 3 S47 A 1 5001 5001 S47 S47 . D 4 GOL A 1 6001 6001 GOL GOL . E 4 GOL A 1 6003 6003 GOL GOL . F 5 1PE A 1 7001 7001 1PE 1PE . G 6 HOH A 1 8001 8001 HOH HOH . G 6 HOH A 2 8002 8002 HOH HOH . G 6 HOH A 3 8003 8003 HOH HOH . G 6 HOH A 4 8004 8004 HOH HOH . G 6 HOH A 5 8005 8005 HOH HOH . G 6 HOH A 6 8006 8006 HOH HOH . G 6 HOH A 7 8007 8007 HOH HOH . G 6 HOH A 8 8008 8008 HOH HOH . G 6 HOH A 9 8009 8009 HOH HOH . G 6 HOH A 10 8010 8010 HOH HOH . G 6 HOH A 11 8011 8011 HOH HOH . G 6 HOH A 12 8012 8012 HOH HOH . G 6 HOH A 13 8013 8013 HOH HOH . G 6 HOH A 14 8014 8014 HOH HOH . G 6 HOH A 15 8015 8015 HOH HOH . G 6 HOH A 16 8016 8016 HOH HOH . G 6 HOH A 17 8017 8017 HOH HOH . G 6 HOH A 18 8018 8018 HOH HOH . G 6 HOH A 19 8019 8019 HOH HOH . G 6 HOH A 20 8020 8020 HOH HOH . G 6 HOH A 21 8021 8021 HOH HOH . G 6 HOH A 22 8022 8022 HOH HOH . G 6 HOH A 23 8023 8023 HOH HOH . G 6 HOH A 24 8024 8024 HOH HOH . G 6 HOH A 25 8025 8025 HOH HOH . G 6 HOH A 26 8026 8026 HOH HOH . G 6 HOH A 27 8027 8027 HOH HOH . G 6 HOH A 28 8028 8028 HOH HOH . G 6 HOH A 29 8029 8029 HOH HOH . G 6 HOH A 30 8030 8030 HOH HOH . G 6 HOH A 31 8031 8031 HOH HOH . G 6 HOH A 32 8032 8032 HOH HOH . G 6 HOH A 33 8033 8033 HOH HOH . G 6 HOH A 34 8034 8034 HOH HOH . G 6 HOH A 35 8035 8035 HOH HOH . G 6 HOH A 36 8036 8036 HOH HOH . G 6 HOH A 37 8037 8037 HOH HOH . G 6 HOH A 38 8038 8038 HOH HOH . G 6 HOH A 39 8039 8039 HOH HOH . G 6 HOH A 40 8040 8040 HOH HOH . G 6 HOH A 41 8041 8041 HOH HOH . G 6 HOH A 42 8042 8042 HOH HOH . G 6 HOH A 43 8043 8043 HOH HOH . G 6 HOH A 44 8044 8044 HOH HOH . G 6 HOH A 45 8045 8045 HOH HOH . G 6 HOH A 46 8046 8046 HOH HOH . G 6 HOH A 47 8047 8047 HOH HOH . G 6 HOH A 48 8048 8048 HOH HOH . G 6 HOH A 49 8049 8049 HOH HOH . G 6 HOH A 50 8050 8050 HOH HOH . G 6 HOH A 51 8051 8051 HOH HOH . G 6 HOH A 52 8052 8052 HOH HOH . G 6 HOH A 53 8053 8053 HOH HOH . G 6 HOH A 54 8054 8054 HOH HOH . G 6 HOH A 55 8055 8055 HOH HOH . G 6 HOH A 56 8056 8056 HOH HOH . G 6 HOH A 57 8057 8057 HOH HOH . G 6 HOH A 58 8058 8058 HOH HOH . G 6 HOH A 59 8059 8059 HOH HOH . G 6 HOH A 60 8060 8060 HOH HOH . G 6 HOH A 61 8061 8061 HOH HOH . G 6 HOH A 62 8062 8062 HOH HOH . G 6 HOH A 63 8063 8063 HOH HOH . G 6 HOH A 64 8064 8064 HOH HOH . G 6 HOH A 65 8065 8065 HOH HOH . G 6 HOH A 66 8066 8066 HOH HOH . G 6 HOH A 67 8067 8067 HOH HOH . G 6 HOH A 68 8068 8068 HOH HOH . G 6 HOH A 69 8069 8069 HOH HOH . G 6 HOH A 70 8070 8070 HOH HOH . G 6 HOH A 71 8071 8071 HOH HOH . G 6 HOH A 72 8072 8072 HOH HOH . G 6 HOH A 73 8073 8073 HOH HOH . G 6 HOH A 74 8074 8074 HOH HOH . G 6 HOH A 75 8075 8075 HOH HOH . G 6 HOH A 76 8076 8076 HOH HOH . G 6 HOH A 77 8077 8077 HOH HOH . G 6 HOH A 78 8078 8078 HOH HOH . G 6 HOH A 79 8079 8079 HOH HOH . G 6 HOH A 80 8080 8080 HOH HOH . G 6 HOH A 81 8081 8081 HOH HOH . G 6 HOH A 82 8082 8082 HOH HOH . G 6 HOH A 83 8083 8083 HOH HOH . G 6 HOH A 84 8084 8084 HOH HOH . G 6 HOH A 85 8085 8085 HOH HOH . G 6 HOH A 86 8086 8086 HOH HOH . G 6 HOH A 87 8087 8087 HOH HOH . G 6 HOH A 88 8088 8088 HOH HOH . G 6 HOH A 89 8089 8089 HOH HOH . G 6 HOH A 90 8090 8090 HOH HOH . G 6 HOH A 91 8091 8091 HOH HOH . G 6 HOH A 92 8092 8092 HOH HOH . G 6 HOH A 93 8093 8093 HOH HOH . G 6 HOH A 94 8094 8094 HOH HOH . G 6 HOH A 95 8095 8095 HOH HOH . G 6 HOH A 96 8096 8096 HOH HOH . G 6 HOH A 97 8097 8097 HOH HOH . G 6 HOH A 98 8098 8098 HOH HOH . G 6 HOH A 99 8099 8099 HOH HOH . G 6 HOH A 100 8100 8100 HOH HOH . G 6 HOH A 101 8101 8101 HOH HOH . G 6 HOH A 102 8102 8102 HOH HOH . G 6 HOH A 103 8103 8103 HOH HOH . G 6 HOH A 104 8104 8104 HOH HOH . G 6 HOH A 105 8105 8105 HOH HOH . G 6 HOH A 106 8106 8106 HOH HOH . G 6 HOH A 107 8107 8107 HOH HOH . G 6 HOH A 108 8108 8108 HOH HOH . G 6 HOH A 109 8109 8109 HOH HOH . G 6 HOH A 110 8110 8110 HOH HOH . G 6 HOH A 111 8111 8111 HOH HOH . G 6 HOH A 112 8112 8112 HOH HOH . G 6 HOH A 113 8113 8113 HOH HOH . G 6 HOH A 114 8114 8114 HOH HOH . G 6 HOH A 115 8115 8115 HOH HOH . G 6 HOH A 116 8116 8116 HOH HOH . G 6 HOH A 117 8117 8117 HOH HOH . G 6 HOH A 118 8118 8118 HOH HOH . G 6 HOH A 119 8119 8119 HOH HOH . G 6 HOH A 120 8120 8120 HOH HOH . G 6 HOH A 121 8121 8121 HOH HOH . G 6 HOH A 122 8122 8122 HOH HOH . G 6 HOH A 123 8123 8123 HOH HOH . G 6 HOH A 124 8124 8124 HOH HOH . G 6 HOH A 125 8125 8125 HOH HOH . G 6 HOH A 126 8126 8126 HOH HOH . G 6 HOH A 127 8127 8127 HOH HOH . G 6 HOH A 128 8128 8128 HOH HOH . G 6 HOH A 129 8129 8129 HOH HOH . G 6 HOH A 130 8130 8130 HOH HOH . G 6 HOH A 131 8131 8131 HOH HOH . G 6 HOH A 132 8132 8132 HOH HOH . G 6 HOH A 133 8133 8133 HOH HOH . G 6 HOH A 134 8134 8134 HOH HOH . G 6 HOH A 135 8135 8135 HOH HOH . G 6 HOH A 136 8136 8136 HOH HOH . G 6 HOH A 137 8137 8137 HOH HOH . G 6 HOH A 138 8138 8138 HOH HOH . G 6 HOH A 139 8139 8139 HOH HOH . G 6 HOH A 140 8140 8140 HOH HOH . G 6 HOH A 141 8141 8141 HOH HOH . G 6 HOH A 142 8142 8142 HOH HOH . G 6 HOH A 143 8143 8143 HOH HOH . G 6 HOH A 144 8145 8145 HOH HOH . G 6 HOH A 145 8146 8146 HOH HOH . G 6 HOH A 146 8147 8147 HOH HOH . G 6 HOH A 147 8148 8148 HOH HOH . G 6 HOH A 148 8149 8149 HOH HOH . G 6 HOH A 149 8151 8151 HOH HOH . G 6 HOH A 150 8152 8152 HOH HOH . G 6 HOH A 151 8153 8153 HOH HOH . G 6 HOH A 152 8154 8154 HOH HOH . G 6 HOH A 153 8155 8155 HOH HOH . G 6 HOH A 154 8156 8156 HOH HOH . G 6 HOH A 155 8157 8157 HOH HOH . G 6 HOH A 156 8159 8159 HOH HOH . G 6 HOH A 157 8160 8160 HOH HOH . G 6 HOH A 158 8161 8161 HOH HOH . G 6 HOH A 159 8163 8163 HOH HOH . G 6 HOH A 160 8164 8164 HOH HOH . G 6 HOH A 161 8166 8166 HOH HOH . G 6 HOH A 162 8168 8168 HOH HOH . G 6 HOH A 163 8169 8169 HOH HOH . G 6 HOH A 164 8170 8170 HOH HOH . G 6 HOH A 165 8171 8171 HOH HOH . G 6 HOH A 166 8172 8172 HOH HOH . G 6 HOH A 167 8173 8173 HOH HOH . G 6 HOH A 168 8174 8174 HOH HOH . G 6 HOH A 169 8175 8175 HOH HOH . G 6 HOH A 170 8176 8176 HOH HOH . G 6 HOH A 171 8177 8177 HOH HOH . G 6 HOH A 172 8178 8178 HOH HOH . G 6 HOH A 173 8179 8179 HOH HOH . G 6 HOH A 174 8180 8180 HOH HOH . G 6 HOH A 175 8181 8181 HOH HOH . G 6 HOH A 176 8183 8183 HOH HOH . G 6 HOH A 177 8184 8184 HOH HOH . G 6 HOH A 178 8185 8185 HOH HOH . G 6 HOH A 179 8187 8187 HOH HOH . G 6 HOH A 180 8188 8188 HOH HOH . G 6 HOH A 181 8189 8189 HOH HOH . G 6 HOH A 182 8190 8190 HOH HOH . G 6 HOH A 183 8192 8192 HOH HOH . G 6 HOH A 184 8193 8193 HOH HOH . G 6 HOH A 185 8194 8194 HOH HOH . G 6 HOH A 186 8195 8195 HOH HOH . G 6 HOH A 187 8196 8196 HOH HOH . G 6 HOH A 188 8197 8197 HOH HOH . G 6 HOH A 189 8200 8200 HOH HOH . G 6 HOH A 190 8201 8201 HOH HOH . G 6 HOH A 191 8202 8202 HOH HOH . G 6 HOH A 192 8203 8203 HOH HOH . G 6 HOH A 193 8204 8204 HOH HOH . G 6 HOH A 194 8206 8206 HOH HOH . G 6 HOH A 195 8207 8207 HOH HOH . G 6 HOH A 196 8208 8208 HOH HOH . G 6 HOH A 197 8209 8209 HOH HOH . G 6 HOH A 198 8210 8210 HOH HOH . G 6 HOH A 199 8211 8211 HOH HOH . G 6 HOH A 200 8213 8213 HOH HOH . G 6 HOH A 201 8214 8214 HOH HOH . G 6 HOH A 202 8215 8215 HOH HOH . G 6 HOH A 203 8216 8216 HOH HOH . G 6 HOH A 204 8217 8217 HOH HOH . G 6 HOH A 205 8218 8218 HOH HOH . G 6 HOH A 206 8219 8219 HOH HOH . G 6 HOH A 207 8220 8220 HOH HOH . G 6 HOH A 208 8221 8221 HOH HOH . G 6 HOH A 209 8225 8225 HOH HOH . G 6 HOH A 210 8226 8226 HOH HOH . G 6 HOH A 211 8227 8227 HOH HOH . G 6 HOH A 212 8228 8228 HOH HOH . G 6 HOH A 213 8229 8229 HOH HOH . G 6 HOH A 214 8232 8232 HOH HOH . G 6 HOH A 215 8235 8235 HOH HOH . G 6 HOH A 216 8237 8237 HOH HOH . G 6 HOH A 217 8239 8239 HOH HOH . G 6 HOH A 218 8240 8240 HOH HOH . G 6 HOH A 219 8241 8241 HOH HOH . G 6 HOH A 220 8242 8242 HOH HOH . G 6 HOH A 221 8243 8243 HOH HOH . G 6 HOH A 222 8244 8244 HOH HOH . G 6 HOH A 223 8245 8245 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OH2 1PE . . . F 5 -11.436 7.552 3.855 1 51.03 ? OH2 1PE 7001 A 1 HETATM 2 C C12 1PE . . . F 5 -11.415 6.602 2.853 1 42.76 ? C12 1PE 7001 A 1 HETATM 3 C C22 1PE . . . F 5 -12.727 6.101 2.354 1 40.36 ? C22 1PE 7001 A 1 HETATM 4 O OH3 1PE . . . F 5 -12.711 5.177 1.332 1 43.45 ? OH3 1PE 7001 A 1 HETATM 5 C C13 1PE . . . F 5 -13.776 3.379 0.04 1 31.2 ? C13 1PE 7001 A 1 HETATM 6 C C23 1PE . . . F 5 -13.689 4.207 1.277 1 37.66 ? C23 1PE 7001 A 1 HETATM 7 O OH4 1PE . . . F 5 -13.562 2.024 0.179 1 39.24 ? OH4 1PE 7001 A 1 HETATM 8 C C14 1PE . . . F 5 -11.75 0.474 -0.392 1 29.45 ? C14 1PE 7001 A 1 HETATM 9 C C24 1PE . . . F 5 -12.893 1.338 -0.811 1 31.59 ? C24 1PE 7001 A 1 HETATM 10 O OH5 1PE . . . F 5 -10.637 1.116 0.108 1 38.13 ? OH5 1PE 7001 A 1 HETATM 11 C C15 1PE . . . F 5 -8.25 1.263 0.617 1 24.46 ? C15 1PE 7001 A 1 HETATM 12 C C25 1PE . . . F 5 -9.432 0.457 0.197 1 32.89 ? C25 1PE 7001 A 1 HETATM 13 O OH6 1PE . . . F 5 -8.365 1.965 1.795 1 34.47 ? OH6 1PE 7001 A 1 HETATM 14 C C16 1PE . . . F 5 -7.737 3.832 3.25 1 34.83 ? C16 1PE 7001 A 1 HETATM 15 C C26 1PE . . . F 5 -7.407 2.892 2.14 1 30.59 ? C26 1PE 7001 A 1 HETATM 16 O OH7 1PE . . . F 5 -8.659 4.827 2.99 1 43.51 ? OH7 1PE 7001 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 242 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 16 #