data_3Q70 # _model_server_result.job_id WmQ4_Pe-tiUokjwrGjNlSw _model_server_result.datetime_utc '2024-12-03 11:09:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3q70 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":4001}' # _entry.id 3Q70 # _exptl.entry_id 3Q70 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4R)-2-METHYLPENTANE-2,4-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3Q70 _cell.length_a 49.28 _cell.length_b 65.46 _cell.length_c 98.45 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3Q70 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 47 A CYS 47 1_555 A SG CYS 59 A CYS 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? disulf ? disulf2 A SG CYS 256 A CYS 256 1_555 A SG CYS 294 A CYS 294 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc1 A OD2 ASP 57 A ASP 57 1_555 C ZN ZN . A ZN 3000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? metalc ? metalc2 C ZN ZN . A ZN 3000 1_555 F O HOH . A HOH 6195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.934 ? metalc ? metalc3 C ZN ZN . A ZN 3000 1_555 F O HOH . A HOH 6204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? metalc ? metalc4 D ZN ZN . A ZN 3001 1_555 F O HOH . A HOH 6196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc5 D ZN ZN . A ZN 3001 1_555 F O HOH . A HOH 6199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc6 D ZN ZN . A ZN 3001 1_555 F O HOH . A HOH 6200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc7 D ZN ZN . A ZN 3001 1_555 F O HOH . A HOH 6201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc8 D ZN ZN . A ZN 3001 1_555 F O HOH . A HOH 6202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MRD _chem_comp.mon_nstd_flag . _chem_comp.name (4R)-2-METHYLPENTANE-2,4-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MRD sing 218 n n C1 H1C1 MRD sing 219 n n C1 H1C2 MRD sing 220 n n C1 H1C3 MRD sing 221 n n C2 O2 MRD sing 222 n n C2 CM MRD sing 223 n n C2 C3 MRD sing 224 n n O2 H2 MRD sing 225 n n CM HMC1 MRD sing 226 n n CM HMC2 MRD sing 227 n n CM HMC3 MRD sing 228 n n C3 C4 MRD sing 229 n n C3 H3C1 MRD sing 230 n n C3 H3C2 MRD sing 231 n n C4 O4 MRD sing 232 n n C4 C5 MRD sing 233 n n C4 H4 MRD sing 234 n n O4 HA MRD sing 235 n n C5 H5C1 MRD sing 236 n n C5 H5C2 MRD sing 237 n n C5 H5C3 MRD sing 238 n n # _atom_sites.entry_id 3Q70 _atom_sites.fract_transf_matrix[1][1] 0.020292 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015277 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010157 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RIT A 1 2001 2001 RIT RIT . C 3 ZN A 1 3000 3000 ZN ZN . D 3 ZN A 1 3001 3001 ZN ZN . E 4 MRD A 1 4001 4001 MRD MRD . F 5 HOH A 1 6001 6001 HOH HOH . F 5 HOH A 2 6002 6002 HOH HOH . F 5 HOH A 3 6003 6003 HOH HOH . F 5 HOH A 4 6004 6004 HOH HOH . F 5 HOH A 5 6005 6005 HOH HOH . F 5 HOH A 6 6006 6006 HOH HOH . F 5 HOH A 7 6007 6007 HOH HOH . F 5 HOH A 8 6008 6008 HOH HOH . F 5 HOH A 9 6009 6009 HOH HOH . F 5 HOH A 10 6010 6010 HOH HOH . F 5 HOH A 11 6011 6011 HOH HOH . F 5 HOH A 12 6012 6012 HOH HOH . F 5 HOH A 13 6013 6013 HOH HOH . F 5 HOH A 14 6014 6014 HOH HOH . F 5 HOH A 15 6015 6015 HOH HOH . F 5 HOH A 16 6016 6016 HOH HOH . F 5 HOH A 17 6017 6017 HOH HOH . F 5 HOH A 18 6018 6018 HOH HOH . F 5 HOH A 19 6019 6019 HOH HOH . F 5 HOH A 20 6020 6020 HOH HOH . F 5 HOH A 21 6021 6021 HOH HOH . F 5 HOH A 22 6022 6022 HOH HOH . F 5 HOH A 23 6023 6023 HOH HOH . F 5 HOH A 24 6024 6024 HOH HOH . F 5 HOH A 25 6025 6025 HOH HOH . F 5 HOH A 26 6026 6026 HOH HOH . F 5 HOH A 27 6027 6027 HOH HOH . F 5 HOH A 28 6028 6028 HOH HOH . F 5 HOH A 29 6029 6029 HOH HOH . F 5 HOH A 30 6030 6030 HOH HOH . F 5 HOH A 31 6031 6031 HOH HOH . F 5 HOH A 32 6032 6032 HOH HOH . F 5 HOH A 33 6033 6033 HOH HOH . F 5 HOH A 34 6034 6034 HOH HOH . F 5 HOH A 35 6035 6035 HOH HOH . F 5 HOH A 36 6036 6036 HOH HOH . F 5 HOH A 37 6037 6037 HOH HOH . F 5 HOH A 38 6038 6038 HOH HOH . F 5 HOH A 39 6039 6039 HOH HOH . F 5 HOH A 40 6040 6040 HOH HOH . F 5 HOH A 41 6041 6041 HOH HOH . F 5 HOH A 42 6042 6042 HOH HOH . F 5 HOH A 43 6043 6043 HOH HOH . F 5 HOH A 44 6044 6044 HOH HOH . F 5 HOH A 45 6045 6045 HOH HOH . F 5 HOH A 46 6046 6046 HOH HOH . F 5 HOH A 47 6047 6047 HOH HOH . F 5 HOH A 48 6048 6048 HOH HOH . F 5 HOH A 49 6049 6049 HOH HOH . F 5 HOH A 50 6050 6050 HOH HOH . F 5 HOH A 51 6051 6051 HOH HOH . F 5 HOH A 52 6052 6052 HOH HOH . F 5 HOH A 53 6053 6053 HOH HOH . F 5 HOH A 54 6054 6054 HOH HOH . F 5 HOH A 55 6055 6055 HOH HOH . F 5 HOH A 56 6056 6056 HOH HOH . F 5 HOH A 57 6057 6057 HOH HOH . F 5 HOH A 58 6058 6058 HOH HOH . F 5 HOH A 59 6059 6059 HOH HOH . F 5 HOH A 60 6060 6060 HOH HOH . F 5 HOH A 61 6061 6061 HOH HOH . F 5 HOH A 62 6062 6062 HOH HOH . F 5 HOH A 63 6063 6063 HOH HOH . F 5 HOH A 64 6064 6064 HOH HOH . F 5 HOH A 65 6065 6065 HOH HOH . F 5 HOH A 66 6066 6066 HOH HOH . F 5 HOH A 67 6067 6067 HOH HOH . F 5 HOH A 68 6068 6068 HOH HOH . F 5 HOH A 69 6069 6069 HOH HOH . F 5 HOH A 70 6070 6070 HOH HOH . F 5 HOH A 71 6071 6071 HOH HOH . F 5 HOH A 72 6072 6072 HOH HOH . F 5 HOH A 73 6073 6073 HOH HOH . F 5 HOH A 74 6074 6074 HOH HOH . F 5 HOH A 75 6075 6075 HOH HOH . F 5 HOH A 76 6076 6076 HOH HOH . F 5 HOH A 77 6077 6077 HOH HOH . F 5 HOH A 78 6078 6078 HOH HOH . F 5 HOH A 79 6079 6079 HOH HOH . F 5 HOH A 80 6080 6080 HOH HOH . F 5 HOH A 81 6081 6081 HOH HOH . F 5 HOH A 82 6082 6082 HOH HOH . F 5 HOH A 83 6083 6083 HOH HOH . F 5 HOH A 84 6084 6084 HOH HOH . F 5 HOH A 85 6085 6085 HOH HOH . F 5 HOH A 86 6086 6086 HOH HOH . F 5 HOH A 87 6087 6087 HOH HOH . F 5 HOH A 88 6088 6088 HOH HOH . F 5 HOH A 89 6089 6089 HOH HOH . F 5 HOH A 90 6090 6090 HOH HOH . F 5 HOH A 91 6091 6091 HOH HOH . F 5 HOH A 92 6092 6092 HOH HOH . F 5 HOH A 93 6093 6093 HOH HOH . F 5 HOH A 94 6094 6094 HOH HOH . F 5 HOH A 95 6095 6095 HOH HOH . F 5 HOH A 96 6096 6096 HOH HOH . F 5 HOH A 97 6097 6097 HOH HOH . F 5 HOH A 98 6098 6098 HOH HOH . F 5 HOH A 99 6099 6099 HOH HOH . F 5 HOH A 100 6100 6100 HOH HOH . F 5 HOH A 101 6101 6101 HOH HOH . F 5 HOH A 102 6102 6102 HOH HOH . F 5 HOH A 103 6103 6103 HOH HOH . F 5 HOH A 104 6104 6104 HOH HOH . F 5 HOH A 105 6105 6105 HOH HOH . F 5 HOH A 106 6106 6106 HOH HOH . F 5 HOH A 107 6107 6107 HOH HOH . F 5 HOH A 108 6108 6108 HOH HOH . F 5 HOH A 109 6109 6109 HOH HOH . F 5 HOH A 110 6110 6110 HOH HOH . F 5 HOH A 111 6111 6111 HOH HOH . F 5 HOH A 112 6112 6112 HOH HOH . F 5 HOH A 113 6113 6113 HOH HOH . F 5 HOH A 114 6114 6114 HOH HOH . F 5 HOH A 115 6115 6115 HOH HOH . F 5 HOH A 116 6116 6116 HOH HOH . F 5 HOH A 117 6117 6117 HOH HOH . F 5 HOH A 118 6118 6118 HOH HOH . F 5 HOH A 119 6119 6119 HOH HOH . F 5 HOH A 120 6120 6120 HOH HOH . F 5 HOH A 121 6121 6121 HOH HOH . F 5 HOH A 122 6122 6122 HOH HOH . F 5 HOH A 123 6123 6123 HOH HOH . F 5 HOH A 124 6124 6124 HOH HOH . F 5 HOH A 125 6125 6125 HOH HOH . F 5 HOH A 126 6126 6126 HOH HOH . F 5 HOH A 127 6127 6127 HOH HOH . F 5 HOH A 128 6128 6128 HOH HOH . F 5 HOH A 129 6129 6129 HOH HOH . F 5 HOH A 130 6130 6130 HOH HOH . F 5 HOH A 131 6131 6131 HOH HOH . F 5 HOH A 132 6132 6132 HOH HOH . F 5 HOH A 133 6133 6133 HOH HOH . F 5 HOH A 134 6134 6134 HOH HOH . F 5 HOH A 135 6135 6135 HOH HOH . F 5 HOH A 136 6136 6136 HOH HOH . F 5 HOH A 137 6137 6137 HOH HOH . F 5 HOH A 138 6138 6138 HOH HOH . F 5 HOH A 139 6139 6139 HOH HOH . F 5 HOH A 140 6140 6140 HOH HOH . F 5 HOH A 141 6141 6141 HOH HOH . F 5 HOH A 142 6142 6142 HOH HOH . F 5 HOH A 143 6143 6143 HOH HOH . F 5 HOH A 144 6144 6144 HOH HOH . F 5 HOH A 145 6145 6145 HOH HOH . F 5 HOH A 146 6146 6146 HOH HOH . F 5 HOH A 147 6147 6147 HOH HOH . F 5 HOH A 148 6148 6148 HOH HOH . F 5 HOH A 149 6149 6149 HOH HOH . F 5 HOH A 150 6150 6150 HOH HOH . F 5 HOH A 151 6151 6151 HOH HOH . F 5 HOH A 152 6152 6152 HOH HOH . F 5 HOH A 153 6153 6153 HOH HOH . F 5 HOH A 154 6154 6154 HOH HOH . F 5 HOH A 155 6155 6155 HOH HOH . F 5 HOH A 156 6156 6156 HOH HOH . F 5 HOH A 157 6157 6157 HOH HOH . F 5 HOH A 158 6158 6158 HOH HOH . F 5 HOH A 159 6159 6159 HOH HOH . F 5 HOH A 160 6160 6160 HOH HOH . F 5 HOH A 161 6161 6161 HOH HOH . F 5 HOH A 162 6162 6162 HOH HOH . F 5 HOH A 163 6163 6163 HOH HOH . F 5 HOH A 164 6164 6164 HOH HOH . F 5 HOH A 165 6165 6165 HOH HOH . F 5 HOH A 166 6166 6166 HOH HOH . F 5 HOH A 167 6167 6167 HOH HOH . F 5 HOH A 168 6168 6168 HOH HOH . F 5 HOH A 169 6169 6169 HOH HOH . F 5 HOH A 170 6170 6170 HOH HOH . F 5 HOH A 171 6171 6171 HOH HOH . F 5 HOH A 172 6172 6172 HOH HOH . F 5 HOH A 173 6173 6173 HOH HOH . F 5 HOH A 174 6174 6174 HOH HOH . F 5 HOH A 175 6175 6175 HOH HOH . F 5 HOH A 176 6176 6176 HOH HOH . F 5 HOH A 177 6177 6177 HOH HOH . F 5 HOH A 178 6178 6178 HOH HOH . F 5 HOH A 179 6179 6179 HOH HOH . F 5 HOH A 180 6180 6180 HOH HOH . F 5 HOH A 181 6181 6181 HOH HOH . F 5 HOH A 182 6182 6182 HOH HOH . F 5 HOH A 183 6183 6183 HOH HOH . F 5 HOH A 184 6184 6184 HOH HOH . F 5 HOH A 185 6185 6185 HOH HOH . F 5 HOH A 186 6186 6186 HOH HOH . F 5 HOH A 187 6187 6187 HOH HOH . F 5 HOH A 188 6188 6188 HOH HOH . F 5 HOH A 189 6189 6189 HOH HOH . F 5 HOH A 190 6190 6190 HOH HOH . F 5 HOH A 191 6191 6191 HOH HOH . F 5 HOH A 192 6192 6192 HOH HOH . F 5 HOH A 193 6193 6193 HOH HOH . F 5 HOH A 194 6194 6194 HOH HOH . F 5 HOH A 195 6195 6195 HOH HOH . F 5 HOH A 196 6196 6196 HOH HOH . F 5 HOH A 197 6197 6197 HOH HOH . F 5 HOH A 198 6198 6198 HOH HOH . F 5 HOH A 199 6199 6199 HOH HOH . F 5 HOH A 200 6200 6200 HOH HOH . F 5 HOH A 201 6201 6201 HOH HOH . F 5 HOH A 202 6202 6202 HOH HOH . F 5 HOH A 203 6203 6203 HOH HOH . F 5 HOH A 204 6204 6204 HOH HOH . F 5 HOH A 205 6205 6205 HOH HOH . F 5 HOH A 206 6206 6206 HOH HOH . F 5 HOH A 207 6207 6207 HOH HOH . F 5 HOH A 208 6208 6208 HOH HOH . F 5 HOH A 209 6209 6209 HOH HOH . F 5 HOH A 210 6210 6210 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MRD . . . E 4 -3.433 1.31 16.006 1 14.76 ? C1 MRD 4001 A 1 HETATM 2 C C2 MRD . . . E 4 -1.953 1.175 15.676 1 16.16 ? C2 MRD 4001 A 1 HETATM 3 O O2 MRD . . . E 4 -1.811 0.174 14.655 1 10.51 ? O2 MRD 4001 A 1 HETATM 4 C CM MRD . . . E 4 -1.393 2.44 15.092 1 24.14 ? CM MRD 4001 A 1 HETATM 5 C C3 MRD . . . E 4 -1.225 0.688 16.933 1 19.93 ? C3 MRD 4001 A 1 HETATM 6 C C4 MRD . . . E 4 -1.185 1.61 18.135 1 28.69 ? C4 MRD 4001 A 1 HETATM 7 O O4 MRD . . . E 4 -0.453 2.794 17.701 1 24.43 ? O4 MRD 4001 A 1 HETATM 8 C C5 MRD . . . E 4 -0.412 1.117 19.335 1 24.91 ? C5 MRD 4001 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 8 #