data_3Q7E # _model_server_result.job_id heN6AXSXkY_SUCNVpkLZZg _model_server_result.datetime_utc '2024-12-02 16:45:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3q7e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3Q7E # _exptl.entry_id 3Q7E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3Q7E _cell.length_a 87.307 _cell.length_b 87.307 _cell.length_c 143.29 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3Q7E _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 87.307 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 250 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 254 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 250 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 254 _struct_conn.ptnr2_symmetry 6_554 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.056 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 277 n n N HN1 SAH sing 278 n n N HN2 SAH sing 279 n n CA CB SAH sing 280 n n CA C SAH sing 281 n n CA HA SAH sing 282 n n CB CG SAH sing 283 n n CB HB1 SAH sing 284 n n CB HB2 SAH sing 285 n n CG SD SAH sing 286 n n CG HG1 SAH sing 287 n n CG HG2 SAH sing 288 n n SD C5' SAH sing 289 n n C O SAH doub 290 n n C OXT SAH sing 291 n n OXT HXT SAH sing 292 n n C5' C4' SAH sing 293 n n C5' "H5'1" SAH sing 294 n n C5' "H5'2" SAH sing 295 n n C4' O4' SAH sing 296 n n C4' C3' SAH sing 297 n n C4' H4' SAH sing 298 n n O4' C1' SAH sing 299 n n C3' O3' SAH sing 300 n n C3' C2' SAH sing 301 n n C3' H3' SAH sing 302 n n O3' HO3' SAH sing 303 n n C2' O2' SAH sing 304 n n C2' C1' SAH sing 305 n n C2' H2' SAH sing 306 n n O2' HO2' SAH sing 307 n n C1' N9 SAH sing 308 n n C1' H1' SAH sing 309 n n N9 C8 SAH sing 310 n y N9 C4 SAH sing 311 n y C8 N7 SAH doub 312 n y C8 H8 SAH sing 313 n n N7 C5 SAH sing 314 n y C5 C6 SAH sing 315 n y C5 C4 SAH doub 316 n y C6 N6 SAH sing 317 n n C6 N1 SAH doub 318 n y N6 HN61 SAH sing 319 n n N6 HN62 SAH sing 320 n n N1 C2 SAH sing 321 n y C2 N3 SAH doub 322 n y C2 H2 SAH sing 323 n n N3 C4 SAH sing 324 n y # _atom_sites.entry_id 3Q7E _atom_sites.fract_transf_matrix[1][1] 0.011454 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011454 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006979 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAH A 1 1 1 SAH SAH . C 3 MG A 1 354 1 MG MG . D 4 HOH A 1 2 2 HOH WAT . D 4 HOH A 2 3 3 HOH WAT . D 4 HOH A 3 4 4 HOH WAT . D 4 HOH A 4 355 1 HOH WAT . D 4 HOH A 5 356 5 HOH WAT . D 4 HOH A 6 357 6 HOH WAT . D 4 HOH A 7 358 7 HOH WAT . D 4 HOH A 8 359 8 HOH WAT . D 4 HOH A 9 360 9 HOH WAT . D 4 HOH A 10 361 10 HOH WAT . D 4 HOH A 11 362 11 HOH WAT . D 4 HOH A 12 363 12 HOH WAT . D 4 HOH A 13 364 13 HOH WAT . D 4 HOH A 14 365 14 HOH WAT . D 4 HOH A 15 366 15 HOH WAT . D 4 HOH A 16 367 16 HOH WAT . D 4 HOH A 17 368 17 HOH WAT . D 4 HOH A 18 369 18 HOH WAT . D 4 HOH A 19 370 19 HOH WAT . D 4 HOH A 20 371 20 HOH WAT . D 4 HOH A 21 372 21 HOH WAT . D 4 HOH A 22 373 22 HOH WAT . D 4 HOH A 23 374 23 HOH WAT . D 4 HOH A 24 375 24 HOH WAT . D 4 HOH A 25 376 25 HOH WAT . D 4 HOH A 26 377 26 HOH WAT . D 4 HOH A 27 378 27 HOH WAT . D 4 HOH A 28 379 28 HOH WAT . D 4 HOH A 29 380 29 HOH WAT . D 4 HOH A 30 381 30 HOH WAT . D 4 HOH A 31 382 31 HOH WAT . D 4 HOH A 32 383 32 HOH WAT . D 4 HOH A 33 384 33 HOH WAT . D 4 HOH A 34 385 34 HOH WAT . D 4 HOH A 35 386 35 HOH WAT . D 4 HOH A 36 387 36 HOH WAT . D 4 HOH A 37 388 37 HOH WAT . D 4 HOH A 38 389 38 HOH WAT . D 4 HOH A 39 390 39 HOH WAT . D 4 HOH A 40 391 40 HOH WAT . D 4 HOH A 41 392 41 HOH WAT . D 4 HOH A 42 393 42 HOH WAT . D 4 HOH A 43 394 43 HOH WAT . D 4 HOH A 44 395 44 HOH WAT . D 4 HOH A 45 396 45 HOH WAT . D 4 HOH A 46 397 46 HOH WAT . D 4 HOH A 47 398 47 HOH WAT . D 4 HOH A 48 399 48 HOH WAT . D 4 HOH A 49 400 49 HOH WAT . D 4 HOH A 50 401 50 HOH WAT . D 4 HOH A 51 402 51 HOH WAT . D 4 HOH A 52 403 52 HOH WAT . D 4 HOH A 53 404 53 HOH WAT . D 4 HOH A 54 405 54 HOH WAT . D 4 HOH A 55 406 55 HOH WAT . D 4 HOH A 56 407 56 HOH WAT . D 4 HOH A 57 408 57 HOH WAT . D 4 HOH A 58 409 58 HOH WAT . D 4 HOH A 59 410 59 HOH WAT . D 4 HOH A 60 411 60 HOH WAT . D 4 HOH A 61 412 61 HOH WAT . D 4 HOH A 62 413 62 HOH WAT . D 4 HOH A 63 414 63 HOH WAT . D 4 HOH A 64 415 64 HOH WAT . D 4 HOH A 65 416 65 HOH WAT . D 4 HOH A 66 417 66 HOH WAT . D 4 HOH A 67 418 67 HOH WAT . D 4 HOH A 68 419 68 HOH WAT . D 4 HOH A 69 420 69 HOH WAT . D 4 HOH A 70 421 71 HOH WAT . D 4 HOH A 71 422 72 HOH WAT . D 4 HOH A 72 423 73 HOH WAT . D 4 HOH A 73 424 74 HOH WAT . D 4 HOH A 74 425 75 HOH WAT . D 4 HOH A 75 426 76 HOH WAT . D 4 HOH A 76 427 77 HOH WAT . D 4 HOH A 77 428 78 HOH WAT . D 4 HOH A 78 429 80 HOH WAT . D 4 HOH A 79 430 82 HOH WAT . D 4 HOH A 80 431 83 HOH WAT . D 4 HOH A 81 432 84 HOH WAT . D 4 HOH A 82 433 85 HOH HOH . D 4 HOH A 83 434 86 HOH HOH . D 4 HOH A 84 435 87 HOH HOH . D 4 HOH A 85 436 88 HOH HOH . D 4 HOH A 86 437 89 HOH HOH . D 4 HOH A 87 438 90 HOH HOH . D 4 HOH A 88 439 92 HOH HOH . D 4 HOH A 89 440 93 HOH HOH . D 4 HOH A 90 441 94 HOH HOH . D 4 HOH A 91 442 95 HOH HOH . D 4 HOH A 92 443 96 HOH HOH . D 4 HOH A 93 444 97 HOH HOH . D 4 HOH A 94 445 98 HOH HOH . D 4 HOH A 95 446 99 HOH HOH . D 4 HOH A 96 447 100 HOH HOH . D 4 HOH A 97 448 102 HOH HOH . D 4 HOH A 98 449 103 HOH HOH . D 4 HOH A 99 450 104 HOH HOH . D 4 HOH A 100 451 105 HOH HOH . D 4 HOH A 101 452 106 HOH HOH . D 4 HOH A 102 453 107 HOH HOH . D 4 HOH A 103 454 108 HOH HOH . D 4 HOH A 104 455 109 HOH HOH . D 4 HOH A 105 456 110 HOH HOH . D 4 HOH A 106 457 111 HOH HOH . D 4 HOH A 107 458 112 HOH HOH . D 4 HOH A 108 459 113 HOH HOH . D 4 HOH A 109 460 114 HOH HOH . D 4 HOH A 110 461 115 HOH HOH . D 4 HOH A 111 462 116 HOH HOH . D 4 HOH A 112 463 117 HOH HOH . D 4 HOH A 113 464 118 HOH HOH . D 4 HOH A 114 465 119 HOH HOH . D 4 HOH A 115 466 120 HOH HOH . D 4 HOH A 116 467 121 HOH HOH . D 4 HOH A 117 468 123 HOH HOH . D 4 HOH A 118 469 124 HOH HOH . D 4 HOH A 119 470 125 HOH HOH . D 4 HOH A 120 471 126 HOH HOH . D 4 HOH A 121 472 127 HOH HOH . D 4 HOH A 122 473 128 HOH HOH . D 4 HOH A 123 474 129 HOH HOH . D 4 HOH A 124 475 130 HOH HOH . D 4 HOH A 125 476 131 HOH HOH . D 4 HOH A 126 477 132 HOH HOH . D 4 HOH A 127 478 133 HOH HOH . D 4 HOH A 128 479 134 HOH HOH . D 4 HOH A 129 480 135 HOH HOH . D 4 HOH A 130 481 136 HOH HOH . D 4 HOH A 131 482 138 HOH HOH . D 4 HOH A 132 483 139 HOH HOH . D 4 HOH A 133 484 140 HOH HOH . D 4 HOH A 134 485 141 HOH HOH . D 4 HOH A 135 486 142 HOH HOH . D 4 HOH A 136 487 143 HOH HOH . D 4 HOH A 137 488 144 HOH HOH . D 4 HOH A 138 489 145 HOH HOH . D 4 HOH A 139 490 146 HOH HOH . D 4 HOH A 140 491 147 HOH HOH . D 4 HOH A 141 492 148 HOH HOH . D 4 HOH A 142 493 149 HOH HOH . D 4 HOH A 143 494 150 HOH HOH . D 4 HOH A 144 495 151 HOH HOH . D 4 HOH A 145 496 152 HOH HOH . D 4 HOH A 146 497 153 HOH HOH . D 4 HOH A 147 498 154 HOH HOH . D 4 HOH A 148 499 155 HOH HOH . D 4 HOH A 149 500 157 HOH HOH . D 4 HOH A 150 501 158 HOH HOH . D 4 HOH A 151 502 159 HOH HOH . D 4 HOH A 152 503 160 HOH HOH . D 4 HOH A 153 504 161 HOH HOH . D 4 HOH A 154 505 163 HOH HOH . D 4 HOH A 155 506 164 HOH HOH . D 4 HOH A 156 507 165 HOH HOH . D 4 HOH A 157 508 166 HOH HOH . D 4 HOH A 158 509 167 HOH HOH . D 4 HOH A 159 510 168 HOH HOH . D 4 HOH A 160 511 169 HOH HOH . D 4 HOH A 161 512 170 HOH HOH . D 4 HOH A 162 513 171 HOH HOH . D 4 HOH A 163 514 172 HOH HOH . D 4 HOH A 164 515 173 HOH HOH . D 4 HOH A 165 516 174 HOH HOH . D 4 HOH A 166 517 175 HOH HOH . D 4 HOH A 167 518 176 HOH HOH . D 4 HOH A 168 519 177 HOH HOH . D 4 HOH A 169 520 178 HOH HOH . D 4 HOH A 170 521 179 HOH HOH . D 4 HOH A 171 522 180 HOH HOH . D 4 HOH A 172 523 181 HOH HOH . D 4 HOH A 173 524 182 HOH HOH . D 4 HOH A 174 525 185 HOH HOH . D 4 HOH A 175 526 186 HOH HOH . D 4 HOH A 176 527 187 HOH HOH . D 4 HOH A 177 528 188 HOH HOH . D 4 HOH A 178 529 190 HOH HOH . D 4 HOH A 179 530 192 HOH HOH . D 4 HOH A 180 531 193 HOH HOH . D 4 HOH A 181 532 194 HOH HOH . D 4 HOH A 182 533 198 HOH HOH . D 4 HOH A 183 534 199 HOH HOH . D 4 HOH A 184 535 202 HOH HOH . D 4 HOH A 185 536 203 HOH HOH . D 4 HOH A 186 537 204 HOH HOH . D 4 HOH A 187 538 205 HOH HOH . D 4 HOH A 188 539 206 HOH HOH . D 4 HOH A 189 540 207 HOH HOH . D 4 HOH A 190 541 208 HOH HOH . D 4 HOH A 191 542 209 HOH HOH . D 4 HOH A 192 543 211 HOH HOH . D 4 HOH A 193 544 212 HOH HOH . D 4 HOH A 194 545 214 HOH HOH . D 4 HOH A 195 546 215 HOH HOH . D 4 HOH A 196 547 217 HOH HOH . D 4 HOH A 197 548 218 HOH HOH . D 4 HOH A 198 549 221 HOH HOH . D 4 HOH A 199 550 222 HOH HOH . D 4 HOH A 200 551 223 HOH HOH . D 4 HOH A 201 552 225 HOH HOH . D 4 HOH A 202 553 226 HOH HOH . D 4 HOH A 203 554 227 HOH HOH . D 4 HOH A 204 555 228 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . B 2 24.502 -8.598 -6.268 1 25.82 ? N SAH 1 A 1 HETATM 2 C CA SAH . . . B 2 25.237 -7.823 -5.275 1 29.53 ? CA SAH 1 A 1 HETATM 3 C CB SAH . . . B 2 26.66 -8.335 -5.073 1 25.51 ? CB SAH 1 A 1 HETATM 4 C CG SAH . . . B 2 27.513 -8.396 -6.34 1 27.2 ? CG SAH 1 A 1 HETATM 5 S SD SAH . . . B 2 29.207 -8.937 -5.976 1 34.57 ? SD SAH 1 A 1 HETATM 6 C C SAH . . . B 2 25.305 -6.375 -5.716 1 34.74 ? C SAH 1 A 1 HETATM 7 O O SAH . . . B 2 25.178 -6.104 -6.917 1 26.51 ? O SAH 1 A 1 HETATM 8 O OXT SAH . . . B 2 25.494 -5.475 -4.883 1 30.66 ? OXT SAH 1 A 1 HETATM 9 C C5' SAH . . . B 2 28.962 -10.564 -6.716 1 30.91 ? C5' SAH 1 A 1 HETATM 10 C C4' SAH . . . B 2 28.401 -11.566 -5.713 1 34.01 ? C4' SAH 1 A 1 HETATM 11 O O4' SAH . . . B 2 28.292 -12.817 -6.361 1 35.69 ? O4' SAH 1 A 1 HETATM 12 C C3' SAH . . . B 2 29.32 -11.767 -4.522 1 28.64 ? C3' SAH 1 A 1 HETATM 13 O O3' SAH . . . B 2 28.583 -11.602 -3.337 1 30.88 ? O3' SAH 1 A 1 HETATM 14 C C2' SAH . . . B 2 29.795 -13.198 -4.616 1 29.97 ? C2' SAH 1 A 1 HETATM 15 O O2' SAH . . . B 2 29.711 -13.827 -3.373 1 34.37 ? O2' SAH 1 A 1 HETATM 16 C C1' SAH . . . B 2 28.779 -13.839 -5.531 1 34.33 ? C1' SAH 1 A 1 HETATM 17 N N9 SAH . . . B 2 29.307 -14.933 -6.361 1 37.51 ? N9 SAH 1 A 1 HETATM 18 C C8 SAH . . . B 2 30.468 -14.986 -7.08 1 40.76 ? C8 SAH 1 A 1 HETATM 19 N N7 SAH . . . B 2 30.523 -16.19 -7.696 1 40.45 ? N7 SAH 1 A 1 HETATM 20 C C5 SAH . . . B 2 29.41 -16.891 -7.377 1 40.46 ? C5 SAH 1 A 1 HETATM 21 C C6 SAH . . . B 2 28.945 -18.153 -7.723 1 40.81 ? C6 SAH 1 A 1 HETATM 22 N N6 SAH . . . B 2 29.653 -18.945 -8.522 1 35.25 ? N6 SAH 1 A 1 HETATM 23 N N1 SAH . . . B 2 27.742 -18.592 -7.224 1 38.18 ? N1 SAH 1 A 1 HETATM 24 C C2 SAH . . . B 2 27.008 -17.795 -6.384 1 40.08 ? C2 SAH 1 A 1 HETATM 25 N N3 SAH . . . B 2 27.469 -16.549 -6.055 1 38.52 ? N3 SAH 1 A 1 HETATM 26 C C4 SAH . . . B 2 28.645 -16.11 -6.543 1 34.33 ? C4 SAH 1 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #