data_3Q82 # _model_server_result.job_id O5BLsPIbP-QBF7b7f75fXg _model_server_result.datetime_utc '2024-10-14 11:30:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3q82 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":254}' # _entry.id 3Q82 # _exptl.entry_id 3Q82 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 385.478 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(4R,5S)-3-{[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-5-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-4-methyl-4,5-dihydro-1H-pyrrole-2-carboxylic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.98 _cell.angle_gamma 90 _cell.entry_id 3Q82 _cell.length_a 46.801 _cell.length_b 108.087 _cell.length_c 56.451 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3Q82 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,J 1 1 B,F,G,H,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B OG SER 58 B SER 59 1_555 F C1 MER . B MER 254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale2 A OG SER 58 A SER 59 1_555 C C1 MER . A MER 254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.472 ? # _chem_comp.formula 'C17 H27 N3 O5 S' _chem_comp.formula_weight 385.478 _chem_comp.id MER _chem_comp.mon_nstd_flag . _chem_comp.name '(4R,5S)-3-{[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-5-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-4-methyl-4,5-dihydro-1H-pyrrole-2-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Meropenem, bound form' # _atom_sites.entry_id 3Q82 _atom_sites.fract_transf_matrix[1][1] 0.021367 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007349 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009252 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018733 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MER A 1 254 254 MER MER . D 3 GOL A 1 1 1 GOL GOL . E 3 GOL A 1 255 2 GOL GOL . F 2 MER B 1 254 254 MER MER . G 3 GOL B 1 255 3 GOL GOL . H 3 GOL B 1 256 4 GOL GOL . I 3 GOL B 1 257 5 GOL GOL . J 4 HOH A 1 256 3 HOH HOH . J 4 HOH A 2 257 4 HOH HOH . J 4 HOH A 3 258 6 HOH HOH . J 4 HOH A 4 259 7 HOH HOH . J 4 HOH A 5 260 12 HOH HOH . J 4 HOH A 6 261 14 HOH HOH . J 4 HOH A 7 262 20 HOH HOH . J 4 HOH A 8 263 21 HOH HOH . J 4 HOH A 9 264 23 HOH HOH . J 4 HOH A 10 265 24 HOH HOH . J 4 HOH A 11 266 26 HOH HOH . J 4 HOH A 12 267 27 HOH HOH . J 4 HOH A 13 268 29 HOH HOH . J 4 HOH A 14 269 30 HOH HOH . J 4 HOH A 15 270 31 HOH HOH . J 4 HOH A 16 271 32 HOH HOH . J 4 HOH A 17 272 33 HOH HOH . J 4 HOH A 18 273 35 HOH HOH . J 4 HOH A 19 274 38 HOH HOH . J 4 HOH A 20 275 39 HOH HOH . J 4 HOH A 21 276 40 HOH HOH . J 4 HOH A 22 277 42 HOH HOH . J 4 HOH A 23 278 43 HOH HOH . J 4 HOH A 24 279 46 HOH HOH . J 4 HOH A 25 280 47 HOH HOH . J 4 HOH A 26 281 48 HOH HOH . J 4 HOH A 27 282 49 HOH HOH . J 4 HOH A 28 283 50 HOH HOH . J 4 HOH A 29 284 51 HOH HOH . J 4 HOH A 30 285 53 HOH HOH . J 4 HOH A 31 286 56 HOH HOH . J 4 HOH A 32 287 57 HOH HOH . J 4 HOH A 33 288 58 HOH HOH . J 4 HOH A 34 289 61 HOH HOH . J 4 HOH A 35 290 62 HOH HOH . J 4 HOH A 36 291 63 HOH HOH . J 4 HOH A 37 292 68 HOH HOH . J 4 HOH A 38 293 69 HOH HOH . J 4 HOH A 39 294 71 HOH HOH . J 4 HOH A 40 295 72 HOH HOH . J 4 HOH A 41 296 75 HOH HOH . J 4 HOH A 42 297 77 HOH HOH . J 4 HOH A 43 298 78 HOH HOH . J 4 HOH A 44 299 79 HOH HOH . J 4 HOH A 45 300 80 HOH HOH . J 4 HOH A 46 301 81 HOH HOH . J 4 HOH A 47 302 83 HOH HOH . J 4 HOH A 48 303 85 HOH HOH . J 4 HOH A 49 304 86 HOH HOH . J 4 HOH A 50 305 87 HOH HOH . J 4 HOH A 51 306 88 HOH HOH . J 4 HOH A 52 307 89 HOH HOH . J 4 HOH A 53 308 92 HOH HOH . J 4 HOH A 54 309 93 HOH HOH . J 4 HOH A 55 310 95 HOH HOH . J 4 HOH A 56 311 98 HOH HOH . J 4 HOH A 57 312 99 HOH HOH . J 4 HOH A 58 313 100 HOH HOH . J 4 HOH A 59 314 101 HOH HOH . J 4 HOH A 60 315 102 HOH HOH . J 4 HOH A 61 316 104 HOH HOH . J 4 HOH A 62 317 105 HOH HOH . J 4 HOH A 63 318 106 HOH HOH . J 4 HOH A 64 319 108 HOH HOH . J 4 HOH A 65 320 112 HOH HOH . J 4 HOH A 66 321 113 HOH HOH . J 4 HOH A 67 322 114 HOH HOH . J 4 HOH A 68 323 115 HOH HOH . J 4 HOH A 69 324 116 HOH HOH . J 4 HOH A 70 325 117 HOH HOH . J 4 HOH A 71 326 121 HOH HOH . J 4 HOH A 72 327 122 HOH HOH . J 4 HOH A 73 328 123 HOH HOH . J 4 HOH A 74 329 124 HOH HOH . J 4 HOH A 75 330 125 HOH HOH . J 4 HOH A 76 331 126 HOH HOH . J 4 HOH A 77 332 127 HOH HOH . K 4 HOH B 1 1 1 HOH HOH . K 4 HOH B 2 258 2 HOH HOH . K 4 HOH B 3 259 5 HOH HOH . K 4 HOH B 4 260 8 HOH HOH . K 4 HOH B 5 261 9 HOH HOH . K 4 HOH B 6 262 10 HOH HOH . K 4 HOH B 7 263 11 HOH HOH . K 4 HOH B 8 264 13 HOH HOH . K 4 HOH B 9 265 15 HOH HOH . K 4 HOH B 10 266 16 HOH HOH . K 4 HOH B 11 267 17 HOH HOH . K 4 HOH B 12 268 18 HOH HOH . K 4 HOH B 13 269 19 HOH HOH . K 4 HOH B 14 270 22 HOH HOH . K 4 HOH B 15 271 25 HOH HOH . K 4 HOH B 16 272 28 HOH HOH . K 4 HOH B 17 273 34 HOH HOH . K 4 HOH B 18 274 36 HOH HOH . K 4 HOH B 19 275 37 HOH HOH . K 4 HOH B 20 276 41 HOH HOH . K 4 HOH B 21 277 44 HOH HOH . K 4 HOH B 22 278 45 HOH HOH . K 4 HOH B 23 279 52 HOH HOH . K 4 HOH B 24 280 54 HOH HOH . K 4 HOH B 25 281 55 HOH HOH . K 4 HOH B 26 282 59 HOH HOH . K 4 HOH B 27 283 60 HOH HOH . K 4 HOH B 28 284 64 HOH HOH . K 4 HOH B 29 285 65 HOH HOH . K 4 HOH B 30 286 66 HOH HOH . K 4 HOH B 31 287 67 HOH HOH . K 4 HOH B 32 288 70 HOH HOH . K 4 HOH B 33 289 73 HOH HOH . K 4 HOH B 34 290 74 HOH HOH . K 4 HOH B 35 291 76 HOH HOH . K 4 HOH B 36 292 82 HOH HOH . K 4 HOH B 37 293 84 HOH HOH . K 4 HOH B 38 294 90 HOH HOH . K 4 HOH B 39 295 91 HOH HOH . K 4 HOH B 40 296 94 HOH HOH . K 4 HOH B 41 297 96 HOH HOH . K 4 HOH B 42 298 97 HOH HOH . K 4 HOH B 43 299 103 HOH HOH . K 4 HOH B 44 300 107 HOH HOH . K 4 HOH B 45 301 109 HOH HOH . K 4 HOH B 46 302 110 HOH HOH . K 4 HOH B 47 303 111 HOH HOH . K 4 HOH B 48 304 118 HOH HOH . K 4 HOH B 49 305 119 HOH HOH . K 4 HOH B 50 306 120 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MER . . . F 2 -22.906 -19.685 -7.332 1 34.23 ? C1 MER 254 B 1 HETATM 2 C C2 MER . . . F 2 -25.821 -16.986 -6.126 1 53.93 ? C2 MER 254 B 1 HETATM 3 C C3 MER . . . F 2 -23.783 -18.809 -8.199 1 40.65 ? C3 MER 254 B 1 HETATM 4 C C4 MER . . . F 2 -23.971 -17.376 -7.621 1 45.32 ? C4 MER 254 B 1 HETATM 5 C C5 MER . . . F 2 -24.833 -17.575 -5.459 1 50.11 ? C5 MER 254 B 1 HETATM 6 O O6 MER . . . F 2 -23.395 -20.68 -6.831 1 30.23 ? O6 MER 254 B 1 HETATM 7 C C7 MER . . . F 2 -23.402 -19.045 -9.676 1 43.36 ? C7 MER 254 B 1 HETATM 8 O O8 MER . . . F 2 -22.15 -19.738 -9.868 1 45.62 ? O8 MER 254 B 1 HETATM 9 C C9 MER . . . F 2 -23.546 -17.877 -10.621 1 44.23 ? C9 MER 254 B 1 HETATM 10 N N10 MER . . . F 2 -23.815 -17.616 -6.19 1 46.58 ? N10 MER 254 B 1 HETATM 11 C C11 MER . . . F 2 -24.8 -18.157 -4.101 1 50.2 ? C11 MER 254 B 1 HETATM 12 O O12 MER . . . F 2 -25.555 -19.127 -3.806 1 46.92 ? O12 MER 254 B 1 HETATM 13 O O13 MER . . . F 2 -23.989 -17.669 -3.262 1 47.53 ? O13 MER 254 B 1 HETATM 14 S S14 MER . . . F 2 -27.328 -16.515 -5.525 1 63.24 ? S14 MER 254 B 1 HETATM 15 C C15 MER . . . F 2 -28.03 -14.912 -5.898 1 66.15 ? C15 MER 254 B 1 HETATM 16 C C16 MER . . . F 2 -28.984 -14.432 -4.791 1 68.13 ? C16 MER 254 B 1 HETATM 17 C C17 MER . . . F 2 -28.573 -13.004 -4.403 1 70.02 ? C17 MER 254 B 1 HETATM 18 C C18 MER . . . F 2 -25.415 -16.806 -7.556 1 50.48 ? C18 MER 254 B 1 HETATM 19 N N19 MER . . . F 2 -27.517 -12.667 -5.343 1 69.33 ? N19 MER 254 B 1 HETATM 20 C C20 MER . . . F 2 -26.52 -17.448 -8.409 1 48.92 ? C20 MER 254 B 1 HETATM 21 C C21 MER . . . F 2 -26.984 -13.804 -6.068 1 67.4 ? C21 MER 254 B 1 HETATM 22 C C22 MER . . . F 2 -28.134 -12.902 -2.948 1 71.19 ? C22 MER 254 B 1 HETATM 23 N N23 MER . . . F 2 -28.187 -11.713 -2.293 1 71.85 ? N23 MER 254 B 1 HETATM 24 O O24 MER . . . F 2 -27.73 -13.915 -2.39 1 70.75 ? O24 MER 254 B 1 HETATM 25 C C25 MER . . . F 2 -27.773 -11.576 -0.894 1 71.5 ? C25 MER 254 B 1 HETATM 26 C C26 MER . . . F 2 -28.653 -10.454 -2.879 1 71.37 ? C26 MER 254 B 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 406 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 26 #