data_3Q82
#
_model_server_result.job_id            2kCJeWHZH1-aXYPzNaS-6Q 
_model_server_result.datetime_utc      '2024-11-22 13:00:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3q82 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":255}' 
#
_entry.id    3Q82 
#
_exptl.entry_id    3Q82 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          108.98 
_cell.angle_gamma         90 
_cell.entry_id            3Q82 
_cell.length_a            46.801 
_cell.length_b            108.087 
_cell.length_c            56.451 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3Q82 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,J 1 1 
B,F,G,H,I,K 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A OG SER 58 A SER 59 1_555 C C1 MER . A MER 254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.472 ? 
covale ? covale2 B OG SER 58 B SER 59 1_555 F C1 MER . B MER 254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 116 n n 
C1 C2 GOL sing 117 n n 
C1 H11 GOL sing 118 n n 
C1 H12 GOL sing 119 n n 
O1 HO1 GOL sing 120 n n 
C2 O2 GOL sing 121 n n 
C2 C3 GOL sing 122 n n 
C2 H2 GOL sing 123 n n 
O2 HO2 GOL sing 124 n n 
C3 O3 GOL sing 125 n n 
C3 H31 GOL sing 126 n n 
C3 H32 GOL sing 127 n n 
O3 HO3 GOL sing 128 n n 
#
_atom_sites.entry_id                     3Q82 
_atom_sites.fract_transf_matrix[1][1]    0.021367 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.007349 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009252 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018733 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MER A 1 254 254 MER MER . 
D 3 GOL A 1 1 1 GOL GOL . 
E 3 GOL A 1 255 2 GOL GOL . 
F 2 MER B 1 254 254 MER MER . 
G 3 GOL B 1 255 3 GOL GOL . 
H 3 GOL B 1 256 4 GOL GOL . 
I 3 GOL B 1 257 5 GOL GOL . 
J 4 HOH A 1 256 3 HOH HOH . 
J 4 HOH A 2 257 4 HOH HOH . 
J 4 HOH A 3 258 6 HOH HOH . 
J 4 HOH A 4 259 7 HOH HOH . 
J 4 HOH A 5 260 12 HOH HOH . 
J 4 HOH A 6 261 14 HOH HOH . 
J 4 HOH A 7 262 20 HOH HOH . 
J 4 HOH A 8 263 21 HOH HOH . 
J 4 HOH A 9 264 23 HOH HOH . 
J 4 HOH A 10 265 24 HOH HOH . 
J 4 HOH A 11 266 26 HOH HOH . 
J 4 HOH A 12 267 27 HOH HOH . 
J 4 HOH A 13 268 29 HOH HOH . 
J 4 HOH A 14 269 30 HOH HOH . 
J 4 HOH A 15 270 31 HOH HOH . 
J 4 HOH A 16 271 32 HOH HOH . 
J 4 HOH A 17 272 33 HOH HOH . 
J 4 HOH A 18 273 35 HOH HOH . 
J 4 HOH A 19 274 38 HOH HOH . 
J 4 HOH A 20 275 39 HOH HOH . 
J 4 HOH A 21 276 40 HOH HOH . 
J 4 HOH A 22 277 42 HOH HOH . 
J 4 HOH A 23 278 43 HOH HOH . 
J 4 HOH A 24 279 46 HOH HOH . 
J 4 HOH A 25 280 47 HOH HOH . 
J 4 HOH A 26 281 48 HOH HOH . 
J 4 HOH A 27 282 49 HOH HOH . 
J 4 HOH A 28 283 50 HOH HOH . 
J 4 HOH A 29 284 51 HOH HOH . 
J 4 HOH A 30 285 53 HOH HOH . 
J 4 HOH A 31 286 56 HOH HOH . 
J 4 HOH A 32 287 57 HOH HOH . 
J 4 HOH A 33 288 58 HOH HOH . 
J 4 HOH A 34 289 61 HOH HOH . 
J 4 HOH A 35 290 62 HOH HOH . 
J 4 HOH A 36 291 63 HOH HOH . 
J 4 HOH A 37 292 68 HOH HOH . 
J 4 HOH A 38 293 69 HOH HOH . 
J 4 HOH A 39 294 71 HOH HOH . 
J 4 HOH A 40 295 72 HOH HOH . 
J 4 HOH A 41 296 75 HOH HOH . 
J 4 HOH A 42 297 77 HOH HOH . 
J 4 HOH A 43 298 78 HOH HOH . 
J 4 HOH A 44 299 79 HOH HOH . 
J 4 HOH A 45 300 80 HOH HOH . 
J 4 HOH A 46 301 81 HOH HOH . 
J 4 HOH A 47 302 83 HOH HOH . 
J 4 HOH A 48 303 85 HOH HOH . 
J 4 HOH A 49 304 86 HOH HOH . 
J 4 HOH A 50 305 87 HOH HOH . 
J 4 HOH A 51 306 88 HOH HOH . 
J 4 HOH A 52 307 89 HOH HOH . 
J 4 HOH A 53 308 92 HOH HOH . 
J 4 HOH A 54 309 93 HOH HOH . 
J 4 HOH A 55 310 95 HOH HOH . 
J 4 HOH A 56 311 98 HOH HOH . 
J 4 HOH A 57 312 99 HOH HOH . 
J 4 HOH A 58 313 100 HOH HOH . 
J 4 HOH A 59 314 101 HOH HOH . 
J 4 HOH A 60 315 102 HOH HOH . 
J 4 HOH A 61 316 104 HOH HOH . 
J 4 HOH A 62 317 105 HOH HOH . 
J 4 HOH A 63 318 106 HOH HOH . 
J 4 HOH A 64 319 108 HOH HOH . 
J 4 HOH A 65 320 112 HOH HOH . 
J 4 HOH A 66 321 113 HOH HOH . 
J 4 HOH A 67 322 114 HOH HOH . 
J 4 HOH A 68 323 115 HOH HOH . 
J 4 HOH A 69 324 116 HOH HOH . 
J 4 HOH A 70 325 117 HOH HOH . 
J 4 HOH A 71 326 121 HOH HOH . 
J 4 HOH A 72 327 122 HOH HOH . 
J 4 HOH A 73 328 123 HOH HOH . 
J 4 HOH A 74 329 124 HOH HOH . 
J 4 HOH A 75 330 125 HOH HOH . 
J 4 HOH A 76 331 126 HOH HOH . 
J 4 HOH A 77 332 127 HOH HOH . 
K 4 HOH B 1 1 1 HOH HOH . 
K 4 HOH B 2 258 2 HOH HOH . 
K 4 HOH B 3 259 5 HOH HOH . 
K 4 HOH B 4 260 8 HOH HOH . 
K 4 HOH B 5 261 9 HOH HOH . 
K 4 HOH B 6 262 10 HOH HOH . 
K 4 HOH B 7 263 11 HOH HOH . 
K 4 HOH B 8 264 13 HOH HOH . 
K 4 HOH B 9 265 15 HOH HOH . 
K 4 HOH B 10 266 16 HOH HOH . 
K 4 HOH B 11 267 17 HOH HOH . 
K 4 HOH B 12 268 18 HOH HOH . 
K 4 HOH B 13 269 19 HOH HOH . 
K 4 HOH B 14 270 22 HOH HOH . 
K 4 HOH B 15 271 25 HOH HOH . 
K 4 HOH B 16 272 28 HOH HOH . 
K 4 HOH B 17 273 34 HOH HOH . 
K 4 HOH B 18 274 36 HOH HOH . 
K 4 HOH B 19 275 37 HOH HOH . 
K 4 HOH B 20 276 41 HOH HOH . 
K 4 HOH B 21 277 44 HOH HOH . 
K 4 HOH B 22 278 45 HOH HOH . 
K 4 HOH B 23 279 52 HOH HOH . 
K 4 HOH B 24 280 54 HOH HOH . 
K 4 HOH B 25 281 55 HOH HOH . 
K 4 HOH B 26 282 59 HOH HOH . 
K 4 HOH B 27 283 60 HOH HOH . 
K 4 HOH B 28 284 64 HOH HOH . 
K 4 HOH B 29 285 65 HOH HOH . 
K 4 HOH B 30 286 66 HOH HOH . 
K 4 HOH B 31 287 67 HOH HOH . 
K 4 HOH B 32 288 70 HOH HOH . 
K 4 HOH B 33 289 73 HOH HOH . 
K 4 HOH B 34 290 74 HOH HOH . 
K 4 HOH B 35 291 76 HOH HOH . 
K 4 HOH B 36 292 82 HOH HOH . 
K 4 HOH B 37 293 84 HOH HOH . 
K 4 HOH B 38 294 90 HOH HOH . 
K 4 HOH B 39 295 91 HOH HOH . 
K 4 HOH B 40 296 94 HOH HOH . 
K 4 HOH B 41 297 96 HOH HOH . 
K 4 HOH B 42 298 97 HOH HOH . 
K 4 HOH B 43 299 103 HOH HOH . 
K 4 HOH B 44 300 107 HOH HOH . 
K 4 HOH B 45 301 109 HOH HOH . 
K 4 HOH B 46 302 110 HOH HOH . 
K 4 HOH B 47 303 111 HOH HOH . 
K 4 HOH B 48 304 118 HOH HOH . 
K 4 HOH B 49 305 119 HOH HOH . 
K 4 HOH B 50 306 120 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . E 3 4.95 -5.769 6.807 1 68.41 ? C1 GOL 255 A 1 
HETATM 2 O O1 GOL . . . E 3 5.153 -4.676 7.68 1 66.15 ? O1 GOL 255 A 1 
HETATM 3 C C2 GOL . . . E 3 5.465 -5.412 5.412 1 69.05 ? C2 GOL 255 A 1 
HETATM 4 O O2 GOL . . . E 3 6.598 -4.573 5.492 1 68.93 ? O2 GOL 255 A 1 
HETATM 5 C C3 GOL . . . E 3 5.879 -6.675 4.677 1 69.58 ? C3 GOL 255 A 1 
HETATM 6 O O3 GOL . . . E 3 6.389 -6.336 3.409 1 69.52 ? O3 GOL 255 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           476 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#