data_3Q86
#
_model_server_result.job_id            ZQicBpB8UuPI7dKcE4dIiw 
_model_server_result.datetime_utc      '2024-11-14 08:29:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3q86 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":158}' 
#
_entry.id    3Q86 
#
_exptl.entry_id    3Q86 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              523.18 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "GUANOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3Q86 
_cell.length_a            75.302 
_cell.length_b            75.302 
_cell.length_c            154.712 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3Q86 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA trimeric 3 author_and_software_defined_assembly 1 
PISA trimeric 3 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1,2,3 
B,E,F,H 2 1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_545 -y,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 37.651 -65.213445 0 
3 'crystal symmetry operation' 3_655 -x+y+1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 75.302 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 C O2B GTP . A GTP 158 1_555 D MG MG . A MG 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.86 ? 
metalc ? metalc2 C O1A GTP . A GTP 158 1_555 D MG MG . A MG 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? 
metalc ? metalc3 C O5' GTP . A GTP 158 1_555 D MG MG . A MG 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.928 ? 
metalc ? metalc4 E O2A GTP . B GTP 158 1_555 F MG MG . B MG 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.842 ? 
metalc ? metalc5 E O2G GTP . B GTP 158 1_555 F MG MG . B MG 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? 
metalc ? metalc6 E O1B GTP . B GTP 158 1_555 F MG MG . B MG 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.688 ? 
metalc ? metalc7 F MG MG . B MG 159 1_555 H O HOH . B HOH 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? 
metalc ? metalc8 F MG MG . B MG 159 1_555 H O HOH . B HOH 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? 
#
_chem_comp.formula           'C10 H16 N5 O14 P3' 
_chem_comp.formula_weight    523.18 
_chem_comp.id                GTP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "GUANOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GTP doub 116 n n 
PG O2G GTP sing 117 n n 
PG O3G GTP sing 118 n n 
PG O3B GTP sing 119 n n 
O2G HOG2 GTP sing 120 n n 
O3G HOG3 GTP sing 121 n n 
O3B PB GTP sing 122 n n 
PB O1B GTP doub 123 n n 
PB O2B GTP sing 124 n n 
PB O3A GTP sing 125 n n 
O2B HOB2 GTP sing 126 n n 
O3A PA GTP sing 127 n n 
PA O1A GTP doub 128 n n 
PA O2A GTP sing 129 n n 
PA O5' GTP sing 130 n n 
O2A HOA2 GTP sing 131 n n 
O5' C5' GTP sing 132 n n 
C5' C4' GTP sing 133 n n 
C5' H5' GTP sing 134 n n 
C5' "H5''" GTP sing 135 n n 
C4' O4' GTP sing 136 n n 
C4' C3' GTP sing 137 n n 
C4' H4' GTP sing 138 n n 
O4' C1' GTP sing 139 n n 
C3' O3' GTP sing 140 n n 
C3' C2' GTP sing 141 n n 
C3' H3' GTP sing 142 n n 
O3' HO3' GTP sing 143 n n 
C2' O2' GTP sing 144 n n 
C2' C1' GTP sing 145 n n 
C2' H2' GTP sing 146 n n 
O2' HO2' GTP sing 147 n n 
C1' N9 GTP sing 148 n n 
C1' H1' GTP sing 149 n n 
N9 C8 GTP sing 150 n y 
N9 C4 GTP sing 151 n y 
C8 N7 GTP doub 152 n y 
C8 H8 GTP sing 153 n n 
N7 C5 GTP sing 154 n y 
C5 C6 GTP sing 155 n n 
C5 C4 GTP doub 156 n y 
C6 O6 GTP doub 157 n n 
C6 N1 GTP sing 158 n n 
N1 C2 GTP sing 159 n n 
N1 HN1 GTP sing 160 n n 
C2 N2 GTP sing 161 n n 
C2 N3 GTP doub 162 n n 
N2 HN21 GTP sing 163 n n 
N2 HN22 GTP sing 164 n n 
N3 C4 GTP sing 165 n n 
#
_atom_sites.entry_id                     3Q86 
_atom_sites.fract_transf_matrix[1][1]    0.01328 
_atom_sites.fract_transf_matrix[1][2]    0.007667 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015334 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006464 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GTP A 1 158 2 GTP GTP . 
D 3 MG A 1 159 2 MG MG . 
E 2 GTP B 1 158 1 GTP GTP . 
F 3 MG B 1 159 1 MG MG . 
G 4 HOH A 1 160 3 HOH HOH . 
G 4 HOH A 2 161 5 HOH HOH . 
G 4 HOH A 3 162 8 HOH HOH . 
G 4 HOH A 4 163 9 HOH HOH . 
G 4 HOH A 5 164 11 HOH HOH . 
G 4 HOH A 6 165 13 HOH HOH . 
G 4 HOH A 7 166 16 HOH HOH . 
G 4 HOH A 8 167 17 HOH HOH . 
G 4 HOH A 9 168 19 HOH HOH . 
G 4 HOH A 10 169 20 HOH HOH . 
G 4 HOH A 11 170 23 HOH HOH . 
G 4 HOH A 12 171 26 HOH HOH . 
G 4 HOH A 13 172 28 HOH HOH . 
G 4 HOH A 14 173 29 HOH HOH . 
G 4 HOH A 15 174 30 HOH HOH . 
G 4 HOH A 16 175 31 HOH HOH . 
G 4 HOH A 17 176 32 HOH HOH . 
G 4 HOH A 18 177 35 HOH HOH . 
G 4 HOH A 19 178 36 HOH HOH . 
G 4 HOH A 20 179 37 HOH HOH . 
G 4 HOH A 21 180 38 HOH HOH . 
G 4 HOH A 22 181 39 HOH HOH . 
G 4 HOH A 23 182 42 HOH HOH . 
G 4 HOH A 24 183 45 HOH HOH . 
G 4 HOH A 25 184 54 HOH HOH . 
G 4 HOH A 26 185 59 HOH HOH . 
G 4 HOH A 27 186 60 HOH HOH . 
G 4 HOH A 28 187 63 HOH HOH . 
G 4 HOH A 29 188 64 HOH HOH . 
G 4 HOH A 30 189 65 HOH HOH . 
G 4 HOH A 31 190 67 HOH HOH . 
G 4 HOH A 32 191 68 HOH HOH . 
G 4 HOH A 33 192 77 HOH HOH . 
G 4 HOH A 34 193 79 HOH HOH . 
G 4 HOH A 35 194 80 HOH HOH . 
G 4 HOH A 36 195 81 HOH HOH . 
G 4 HOH A 37 196 82 HOH HOH . 
G 4 HOH A 38 197 83 HOH HOH . 
G 4 HOH A 39 198 84 HOH HOH . 
G 4 HOH A 40 199 87 HOH HOH . 
G 4 HOH A 41 200 88 HOH HOH . 
G 4 HOH A 42 201 90 HOH HOH . 
G 4 HOH A 43 202 93 HOH HOH . 
G 4 HOH A 44 203 94 HOH HOH . 
G 4 HOH A 45 204 95 HOH HOH . 
G 4 HOH A 46 205 97 HOH HOH . 
G 4 HOH A 47 206 103 HOH HOH . 
G 4 HOH A 48 207 104 HOH HOH . 
G 4 HOH A 49 208 105 HOH HOH . 
G 4 HOH A 50 209 106 HOH HOH . 
G 4 HOH A 51 210 107 HOH HOH . 
G 4 HOH A 52 211 109 HOH HOH . 
G 4 HOH A 53 212 113 HOH HOH . 
G 4 HOH A 54 213 114 HOH HOH . 
G 4 HOH A 55 214 115 HOH HOH . 
G 4 HOH A 56 215 116 HOH HOH . 
G 4 HOH A 57 216 117 HOH HOH . 
G 4 HOH A 58 217 118 HOH HOH . 
G 4 HOH A 59 218 119 HOH HOH . 
G 4 HOH A 60 219 120 HOH HOH . 
G 4 HOH A 61 220 127 HOH HOH . 
G 4 HOH A 62 221 128 HOH HOH . 
G 4 HOH A 63 222 129 HOH HOH . 
G 4 HOH A 64 223 130 HOH HOH . 
G 4 HOH A 65 224 131 HOH HOH . 
G 4 HOH A 66 225 132 HOH HOH . 
G 4 HOH A 67 226 135 HOH HOH . 
G 4 HOH A 68 227 136 HOH HOH . 
G 4 HOH A 69 228 137 HOH HOH . 
G 4 HOH A 70 229 138 HOH HOH . 
H 4 HOH B 1 160 1 HOH HOH . 
H 4 HOH B 2 161 2 HOH HOH . 
H 4 HOH B 3 162 4 HOH HOH . 
H 4 HOH B 4 163 6 HOH HOH . 
H 4 HOH B 5 164 7 HOH HOH . 
H 4 HOH B 6 165 10 HOH HOH . 
H 4 HOH B 7 166 12 HOH HOH . 
H 4 HOH B 8 167 14 HOH HOH . 
H 4 HOH B 9 168 15 HOH HOH . 
H 4 HOH B 10 169 18 HOH HOH . 
H 4 HOH B 11 170 21 HOH HOH . 
H 4 HOH B 12 171 22 HOH HOH . 
H 4 HOH B 13 172 24 HOH HOH . 
H 4 HOH B 14 173 25 HOH HOH . 
H 4 HOH B 15 174 27 HOH HOH . 
H 4 HOH B 16 175 33 HOH HOH . 
H 4 HOH B 17 176 34 HOH HOH . 
H 4 HOH B 18 177 40 HOH HOH . 
H 4 HOH B 19 178 41 HOH HOH . 
H 4 HOH B 20 179 43 HOH HOH . 
H 4 HOH B 21 180 44 HOH HOH . 
H 4 HOH B 22 181 46 HOH HOH . 
H 4 HOH B 23 182 47 HOH HOH . 
H 4 HOH B 24 183 48 HOH HOH . 
H 4 HOH B 25 184 49 HOH HOH . 
H 4 HOH B 26 185 50 HOH HOH . 
H 4 HOH B 27 186 51 HOH HOH . 
H 4 HOH B 28 187 52 HOH HOH . 
H 4 HOH B 29 188 53 HOH HOH . 
H 4 HOH B 30 189 56 HOH HOH . 
H 4 HOH B 31 190 57 HOH HOH . 
H 4 HOH B 32 191 58 HOH HOH . 
H 4 HOH B 33 192 61 HOH HOH . 
H 4 HOH B 34 193 66 HOH HOH . 
H 4 HOH B 35 194 69 HOH HOH . 
H 4 HOH B 36 195 70 HOH HOH . 
H 4 HOH B 37 196 71 HOH HOH . 
H 4 HOH B 38 197 72 HOH HOH . 
H 4 HOH B 39 198 73 HOH HOH . 
H 4 HOH B 40 199 74 HOH HOH . 
H 4 HOH B 41 200 75 HOH HOH . 
H 4 HOH B 42 201 76 HOH HOH . 
H 4 HOH B 43 202 78 HOH HOH . 
H 4 HOH B 44 203 85 HOH HOH . 
H 4 HOH B 45 204 86 HOH HOH . 
H 4 HOH B 46 205 89 HOH HOH . 
H 4 HOH B 47 206 91 HOH HOH . 
H 4 HOH B 48 207 92 HOH HOH . 
H 4 HOH B 49 208 98 HOH HOH . 
H 4 HOH B 50 209 99 HOH HOH . 
H 4 HOH B 51 210 100 HOH HOH . 
H 4 HOH B 52 211 101 HOH HOH . 
H 4 HOH B 53 212 102 HOH HOH . 
H 4 HOH B 54 213 108 HOH HOH . 
H 4 HOH B 55 214 110 HOH HOH . 
H 4 HOH B 56 215 111 HOH HOH . 
H 4 HOH B 57 216 112 HOH HOH . 
H 4 HOH B 58 217 121 HOH HOH . 
H 4 HOH B 59 218 122 HOH HOH . 
H 4 HOH B 60 219 123 HOH HOH . 
H 4 HOH B 61 220 124 HOH HOH . 
H 4 HOH B 62 221 125 HOH HOH . 
H 4 HOH B 63 222 126 HOH HOH . 
H 4 HOH B 64 223 133 HOH HOH . 
H 4 HOH B 65 224 134 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GTP . . . E 2 19.717 -13.898 12.614 1 26.44 ? PG GTP 158 B 1 
HETATM 2 O O1G GTP . . . E 2 19.71 -13.012 11.388 1 26.21 ? O1G GTP 158 B 1 
HETATM 3 O O2G GTP . . . E 2 18.36 -13.981 13.27 1 29.39 ? O2G GTP 158 B 1 
HETATM 4 O O3G GTP . . . E 2 20.154 -15.297 12.288 1 28.36 ? O3G GTP 158 B 1 
HETATM 5 O O3B GTP . . . E 2 20.822 -13.269 13.623 1 22.07 ? O3B GTP 158 B 1 
HETATM 6 P PB GTP . . . E 2 21.215 -14.137 14.938 1 20.13 ? PB GTP 158 B 1 
HETATM 7 O O1B GTP . . . E 2 20.171 -15.237 15.142 1 22.29 ? O1B GTP 158 B 1 
HETATM 8 O O2B GTP . . . E 2 22.608 -14.718 15.071 1 16.31 ? O2B GTP 158 B 1 
HETATM 9 O O3A GTP . . . E 2 21.012 -12.924 16.04 1 24.35 ? O3A GTP 158 B 1 
HETATM 10 P PA GTP . . . E 2 19.555 -12.244 16.359 1 24.74 ? PA GTP 158 B 1 
HETATM 11 O O1A GTP . . . E 2 19.468 -11.725 17.79 1 26.51 ? O1A GTP 158 B 1 
HETATM 12 O O2A GTP . . . E 2 18.39 -13.171 15.995 1 28.41 ? O2A GTP 158 B 1 
HETATM 13 O O5' GTP . . . E 2 19.206 -11.195 15.254 1 22.9 ? O5' GTP 158 B 1 
HETATM 14 C C5' GTP . . . E 2 19.918 -10.047 15.414 1 21.96 ? C5' GTP 158 B 1 
HETATM 15 C C4' GTP . . . E 2 20.163 -9.608 13.998 1 19.88 ? C4' GTP 158 B 1 
HETATM 16 O O4' GTP . . . E 2 19.972 -8.217 14.165 1 20.65 ? O4' GTP 158 B 1 
HETATM 17 C C3' GTP . . . E 2 21.631 -9.959 13.702 1 21.19 ? C3' GTP 158 B 1 
HETATM 18 O O3' GTP . . . E 2 21.842 -10.948 12.675 1 24.56 ? O3' GTP 158 B 1 
HETATM 19 C C2' GTP . . . E 2 22.232 -8.584 13.486 1 19.6 ? C2' GTP 158 B 1 
HETATM 20 O O2' GTP . . . E 2 22.465 -8.397 12.111 1 18.1 ? O2' GTP 158 B 1 
HETATM 21 C C1' GTP . . . E 2 21.242 -7.611 14.185 1 20.01 ? C1' GTP 158 B 1 
HETATM 22 N N9 GTP . . . E 2 21.714 -7.519 15.584 1 20.49 ? N9 GTP 158 B 1 
HETATM 23 C C8 GTP . . . E 2 21.646 -8.48 16.593 1 18.52 ? C8 GTP 158 B 1 
HETATM 24 N N7 GTP . . . E 2 22.262 -7.983 17.681 1 22.02 ? N7 GTP 158 B 1 
HETATM 25 C C5 GTP . . . E 2 22.747 -6.73 17.388 1 20.61 ? C5 GTP 158 B 1 
HETATM 26 C C6 GTP . . . E 2 23.444 -5.785 18.142 1 22.25 ? C6 GTP 158 B 1 
HETATM 27 O O6 GTP . . . E 2 23.74 -6.076 19.323 1 23.64 ? O6 GTP 158 B 1 
HETATM 28 N N1 GTP . . . E 2 23.798 -4.56 17.539 1 20.09 ? N1 GTP 158 B 1 
HETATM 29 C C2 GTP . . . E 2 23.434 -4.326 16.206 1 19.62 ? C2 GTP 158 B 1 
HETATM 30 N N2 GTP . . . E 2 23.745 -3.208 15.566 1 21.12 ? N2 GTP 158 B 1 
HETATM 31 N N3 GTP . . . E 2 22.741 -5.26 15.471 1 18.63 ? N3 GTP 158 B 1 
HETATM 32 C C4 GTP . . . E 2 22.407 -6.436 16.065 1 20.25 ? C4 GTP 158 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           347 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           32 
#