data_3Q87 # _model_server_result.job_id Y0m1y1DMDwWjDghwU4GotQ _model_server_result.datetime_utc '2024-11-17 05:21:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3q87 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":126}' # _entry.id 3Q87 # _exptl.entry_id 3Q87 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3Q87 _cell.length_a 42.115 _cell.length_b 74.316 _cell.length_c 96.754 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3Q87 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 11 A CYS 11 1_555 C ZN ZN . A ZN 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc2 A SG CYS 14 A CYS 14 1_555 C ZN ZN . A ZN 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc3 A SG CYS 102 A CYS 102 1_555 C ZN ZN . A ZN 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc4 A SG CYS 105 A CYS 105 1_555 C ZN ZN . A ZN 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3Q87 _atom_sites.fract_transf_matrix[1][1] 0.023745 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013456 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010335 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 126 1 ZN ZN . D 4 SAM B 1 300 300 SAM SAM . E 5 HOH A 1 127 127 HOH HOH . E 5 HOH A 2 128 6 HOH HOH . E 5 HOH A 3 129 129 HOH HOH . E 5 HOH A 4 130 11 HOH HOH . E 5 HOH A 5 131 13 HOH HOH . E 5 HOH A 6 132 132 HOH HOH . E 5 HOH A 7 133 14 HOH HOH . E 5 HOH A 8 134 15 HOH HOH . E 5 HOH A 9 135 16 HOH HOH . E 5 HOH A 10 136 17 HOH HOH . E 5 HOH A 11 137 18 HOH HOH . E 5 HOH A 12 138 26 HOH HOH . E 5 HOH A 13 139 29 HOH HOH . E 5 HOH A 14 140 41 HOH HOH . E 5 HOH A 15 141 43 HOH HOH . E 5 HOH A 16 142 44 HOH HOH . E 5 HOH A 17 143 47 HOH HOH . E 5 HOH A 18 144 49 HOH HOH . E 5 HOH A 19 145 53 HOH HOH . E 5 HOH A 20 146 54 HOH HOH . E 5 HOH A 21 147 59 HOH HOH . E 5 HOH A 22 148 62 HOH HOH . E 5 HOH A 23 149 63 HOH HOH . E 5 HOH A 24 150 65 HOH HOH . E 5 HOH A 25 151 67 HOH HOH . E 5 HOH A 26 152 68 HOH HOH . E 5 HOH A 27 153 69 HOH HOH . E 5 HOH A 28 154 72 HOH HOH . E 5 HOH A 29 155 80 HOH HOH . E 5 HOH A 30 156 87 HOH HOH . E 5 HOH A 31 157 89 HOH HOH . E 5 HOH A 32 158 90 HOH HOH . E 5 HOH A 33 159 92 HOH HOH . E 5 HOH A 34 160 94 HOH HOH . E 5 HOH A 35 161 95 HOH HOH . E 5 HOH A 36 162 96 HOH HOH . E 5 HOH A 37 163 101 HOH HOH . E 5 HOH A 38 164 104 HOH HOH . E 5 HOH A 39 165 105 HOH HOH . E 5 HOH A 40 166 106 HOH HOH . E 5 HOH A 41 167 111 HOH HOH . E 5 HOH A 42 168 114 HOH HOH . E 5 HOH A 43 169 117 HOH HOH . E 5 HOH A 44 170 118 HOH HOH . E 5 HOH A 45 171 122 HOH HOH . E 5 HOH A 46 172 123 HOH HOH . E 5 HOH A 47 251 126 HOH HOH . F 5 HOH B 1 171 1 HOH HOH . F 5 HOH B 2 172 2 HOH HOH . F 5 HOH B 3 173 3 HOH HOH . F 5 HOH B 4 174 4 HOH HOH . F 5 HOH B 5 175 5 HOH HOH . F 5 HOH B 6 176 7 HOH HOH . F 5 HOH B 7 177 8 HOH HOH . F 5 HOH B 8 178 9 HOH HOH . F 5 HOH B 9 179 10 HOH HOH . F 5 HOH B 10 180 12 HOH HOH . F 5 HOH B 11 181 19 HOH HOH . F 5 HOH B 12 182 20 HOH HOH . F 5 HOH B 13 183 21 HOH HOH . F 5 HOH B 14 184 22 HOH HOH . F 5 HOH B 15 185 23 HOH HOH . F 5 HOH B 16 186 24 HOH HOH . F 5 HOH B 17 187 25 HOH HOH . F 5 HOH B 18 188 27 HOH HOH . F 5 HOH B 19 189 28 HOH HOH . F 5 HOH B 20 190 30 HOH HOH . F 5 HOH B 21 191 31 HOH HOH . F 5 HOH B 22 192 32 HOH HOH . F 5 HOH B 23 193 33 HOH HOH . F 5 HOH B 24 194 34 HOH HOH . F 5 HOH B 25 195 35 HOH HOH . F 5 HOH B 26 196 36 HOH HOH . F 5 HOH B 27 197 37 HOH HOH . F 5 HOH B 28 198 38 HOH HOH . F 5 HOH B 29 199 39 HOH HOH . F 5 HOH B 30 200 40 HOH HOH . F 5 HOH B 31 201 42 HOH HOH . F 5 HOH B 32 202 45 HOH HOH . F 5 HOH B 33 203 46 HOH HOH . F 5 HOH B 34 204 48 HOH HOH . F 5 HOH B 35 205 50 HOH HOH . F 5 HOH B 36 206 51 HOH HOH . F 5 HOH B 37 207 52 HOH HOH . F 5 HOH B 38 208 55 HOH HOH . F 5 HOH B 39 209 56 HOH HOH . F 5 HOH B 40 210 57 HOH HOH . F 5 HOH B 41 211 58 HOH HOH . F 5 HOH B 42 212 60 HOH HOH . F 5 HOH B 43 213 61 HOH HOH . F 5 HOH B 44 214 64 HOH HOH . F 5 HOH B 45 215 66 HOH HOH . F 5 HOH B 46 216 70 HOH HOH . F 5 HOH B 47 217 71 HOH HOH . F 5 HOH B 48 218 73 HOH HOH . F 5 HOH B 49 219 74 HOH HOH . F 5 HOH B 50 220 75 HOH HOH . F 5 HOH B 51 221 76 HOH HOH . F 5 HOH B 52 222 77 HOH HOH . F 5 HOH B 53 223 78 HOH HOH . F 5 HOH B 54 224 79 HOH HOH . F 5 HOH B 55 225 81 HOH HOH . F 5 HOH B 56 226 82 HOH HOH . F 5 HOH B 57 227 83 HOH HOH . F 5 HOH B 58 228 84 HOH HOH . F 5 HOH B 59 229 85 HOH HOH . F 5 HOH B 60 230 86 HOH HOH . F 5 HOH B 61 231 88 HOH HOH . F 5 HOH B 62 232 91 HOH HOH . F 5 HOH B 63 233 93 HOH HOH . F 5 HOH B 64 234 97 HOH HOH . F 5 HOH B 65 235 98 HOH HOH . F 5 HOH B 66 236 99 HOH HOH . F 5 HOH B 67 237 102 HOH HOH . F 5 HOH B 68 238 103 HOH HOH . F 5 HOH B 69 239 107 HOH HOH . F 5 HOH B 70 240 109 HOH HOH . F 5 HOH B 71 241 110 HOH HOH . F 5 HOH B 72 242 112 HOH HOH . F 5 HOH B 73 243 113 HOH HOH . F 5 HOH B 74 244 115 HOH HOH . F 5 HOH B 75 245 116 HOH HOH . F 5 HOH B 76 246 119 HOH HOH . F 5 HOH B 77 247 120 HOH HOH . F 5 HOH B 78 248 121 HOH HOH . F 5 HOH B 79 249 124 HOH HOH . F 5 HOH B 80 250 125 HOH HOH . F 5 HOH B 81 252 128 HOH HOH . F 5 HOH B 82 253 130 HOH HOH . F 5 HOH B 83 254 131 HOH HOH . F 5 HOH B 84 255 134 HOH HOH . F 5 HOH B 85 256 135 HOH HOH . F 5 HOH B 86 257 136 HOH HOH . F 5 HOH B 87 258 137 HOH HOH . F 5 HOH B 88 259 138 HOH HOH . F 5 HOH B 89 260 139 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 33.487 _atom_site.Cartn_y -6.62 _atom_site.Cartn_z 28.898 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 28.56 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 126 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 222 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #