data_3Q8G # _model_server_result.job_id MDk4vrL9e6hRst2D3NPwTQ _model_server_result.datetime_utc '2025-07-16 22:37:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3q8g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":3968}' # _entry.id 3Q8G # _exptl.entry_id 3Q8G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3Q8G _cell.length_a 49.503 _cell.length_b 71.388 _cell.length_c 99.65 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3Q8G _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3Q8G _atom_sites.fract_transf_matrix[1][1] 0.020201 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014008 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010035 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PEE A 1 311 1 PEE PEE . C 3 GOL A 1 3968 3968 GOL GOL . D 4 HOH A 1 312 1 HOH HOH . D 4 HOH A 2 313 2 HOH HOH . D 4 HOH A 3 314 3 HOH HOH . D 4 HOH A 4 315 4 HOH HOH . D 4 HOH A 5 316 5 HOH HOH . D 4 HOH A 6 317 6 HOH HOH . D 4 HOH A 7 318 7 HOH HOH . D 4 HOH A 8 319 8 HOH HOH . D 4 HOH A 9 320 9 HOH HOH . D 4 HOH A 10 321 10 HOH HOH . D 4 HOH A 11 322 11 HOH HOH . D 4 HOH A 12 323 12 HOH HOH . D 4 HOH A 13 324 13 HOH HOH . D 4 HOH A 14 325 14 HOH HOH . D 4 HOH A 15 326 15 HOH HOH . D 4 HOH A 16 327 16 HOH HOH . D 4 HOH A 17 328 17 HOH HOH . D 4 HOH A 18 329 18 HOH HOH . D 4 HOH A 19 330 19 HOH HOH . D 4 HOH A 20 331 20 HOH HOH . D 4 HOH A 21 332 21 HOH HOH . D 4 HOH A 22 333 22 HOH HOH . D 4 HOH A 23 334 23 HOH HOH . D 4 HOH A 24 335 24 HOH HOH . D 4 HOH A 25 336 25 HOH HOH . D 4 HOH A 26 337 26 HOH HOH . D 4 HOH A 27 338 27 HOH HOH . D 4 HOH A 28 339 28 HOH HOH . D 4 HOH A 29 340 29 HOH HOH . D 4 HOH A 30 341 30 HOH HOH . D 4 HOH A 31 342 31 HOH HOH . D 4 HOH A 32 343 32 HOH HOH . D 4 HOH A 33 344 33 HOH HOH . D 4 HOH A 34 345 34 HOH HOH . D 4 HOH A 35 346 35 HOH HOH . D 4 HOH A 36 347 36 HOH HOH . D 4 HOH A 37 348 37 HOH HOH . D 4 HOH A 38 349 38 HOH HOH . D 4 HOH A 39 350 39 HOH HOH . D 4 HOH A 40 351 40 HOH HOH . D 4 HOH A 41 352 41 HOH HOH . D 4 HOH A 42 353 42 HOH HOH . D 4 HOH A 43 354 43 HOH HOH . D 4 HOH A 44 355 44 HOH HOH . D 4 HOH A 45 356 45 HOH HOH . D 4 HOH A 46 357 46 HOH HOH . D 4 HOH A 47 358 47 HOH HOH . D 4 HOH A 48 359 48 HOH HOH . D 4 HOH A 49 360 49 HOH HOH . D 4 HOH A 50 361 50 HOH HOH . D 4 HOH A 51 362 51 HOH HOH . D 4 HOH A 52 363 52 HOH HOH . D 4 HOH A 53 364 53 HOH HOH . D 4 HOH A 54 365 54 HOH HOH . D 4 HOH A 55 366 55 HOH HOH . D 4 HOH A 56 367 56 HOH HOH . D 4 HOH A 57 368 57 HOH HOH . D 4 HOH A 58 369 58 HOH HOH . D 4 HOH A 59 370 59 HOH HOH . D 4 HOH A 60 371 60 HOH HOH . D 4 HOH A 61 372 61 HOH HOH . D 4 HOH A 62 373 62 HOH HOH . D 4 HOH A 63 374 63 HOH HOH . D 4 HOH A 64 375 64 HOH HOH . D 4 HOH A 65 376 65 HOH HOH . D 4 HOH A 66 377 66 HOH HOH . D 4 HOH A 67 378 67 HOH HOH . D 4 HOH A 68 379 68 HOH HOH . D 4 HOH A 69 380 69 HOH HOH . D 4 HOH A 70 381 70 HOH HOH . D 4 HOH A 71 382 71 HOH HOH . D 4 HOH A 72 383 72 HOH HOH . D 4 HOH A 73 384 73 HOH HOH . D 4 HOH A 74 385 74 HOH HOH . D 4 HOH A 75 386 75 HOH HOH . D 4 HOH A 76 387 76 HOH HOH . D 4 HOH A 77 388 77 HOH HOH . D 4 HOH A 78 389 78 HOH HOH . D 4 HOH A 79 390 79 HOH HOH . D 4 HOH A 80 391 80 HOH HOH . D 4 HOH A 81 392 81 HOH HOH . D 4 HOH A 82 393 82 HOH HOH . D 4 HOH A 83 394 83 HOH HOH . D 4 HOH A 84 395 84 HOH HOH . D 4 HOH A 85 396 85 HOH HOH . D 4 HOH A 86 397 86 HOH HOH . D 4 HOH A 87 398 87 HOH HOH . D 4 HOH A 88 399 88 HOH HOH . D 4 HOH A 89 400 89 HOH HOH . D 4 HOH A 90 401 90 HOH HOH . D 4 HOH A 91 402 91 HOH HOH . D 4 HOH A 92 403 92 HOH HOH . D 4 HOH A 93 404 93 HOH HOH . D 4 HOH A 94 405 94 HOH HOH . D 4 HOH A 95 406 95 HOH HOH . D 4 HOH A 96 407 96 HOH HOH . D 4 HOH A 97 408 97 HOH HOH . D 4 HOH A 98 409 98 HOH HOH . D 4 HOH A 99 410 99 HOH HOH . D 4 HOH A 100 411 100 HOH HOH . D 4 HOH A 101 412 101 HOH HOH . D 4 HOH A 102 413 102 HOH HOH . D 4 HOH A 103 414 103 HOH HOH . D 4 HOH A 104 415 104 HOH HOH . D 4 HOH A 105 416 105 HOH HOH . D 4 HOH A 106 417 106 HOH HOH . D 4 HOH A 107 418 107 HOH HOH . D 4 HOH A 108 419 108 HOH HOH . D 4 HOH A 109 420 109 HOH HOH . D 4 HOH A 110 421 110 HOH HOH . D 4 HOH A 111 422 111 HOH HOH . D 4 HOH A 112 423 112 HOH HOH . D 4 HOH A 113 424 113 HOH HOH . D 4 HOH A 114 425 114 HOH HOH . D 4 HOH A 115 426 115 HOH HOH . D 4 HOH A 116 427 116 HOH HOH . D 4 HOH A 117 428 117 HOH HOH . D 4 HOH A 118 429 118 HOH HOH . D 4 HOH A 119 430 119 HOH HOH . D 4 HOH A 120 431 120 HOH HOH . D 4 HOH A 121 432 121 HOH HOH . D 4 HOH A 122 433 122 HOH HOH . D 4 HOH A 123 434 123 HOH HOH . D 4 HOH A 124 435 124 HOH HOH . D 4 HOH A 125 436 125 HOH HOH . D 4 HOH A 126 437 126 HOH HOH . D 4 HOH A 127 438 127 HOH HOH . D 4 HOH A 128 439 128 HOH HOH . D 4 HOH A 129 440 129 HOH HOH . D 4 HOH A 130 441 130 HOH HOH . D 4 HOH A 131 442 131 HOH HOH . D 4 HOH A 132 443 132 HOH HOH . D 4 HOH A 133 444 133 HOH HOH . D 4 HOH A 134 445 134 HOH HOH . D 4 HOH A 135 446 135 HOH HOH . D 4 HOH A 136 447 136 HOH HOH . D 4 HOH A 137 448 137 HOH HOH . D 4 HOH A 138 449 138 HOH HOH . D 4 HOH A 139 450 139 HOH HOH . D 4 HOH A 140 451 140 HOH HOH . D 4 HOH A 141 452 141 HOH HOH . D 4 HOH A 142 453 142 HOH HOH . D 4 HOH A 143 454 143 HOH HOH . D 4 HOH A 144 455 144 HOH HOH . D 4 HOH A 145 456 145 HOH HOH . D 4 HOH A 146 457 146 HOH HOH . D 4 HOH A 147 458 147 HOH HOH . D 4 HOH A 148 459 148 HOH HOH . D 4 HOH A 149 460 149 HOH HOH . D 4 HOH A 150 461 150 HOH HOH . D 4 HOH A 151 462 151 HOH HOH . D 4 HOH A 152 463 152 HOH HOH . D 4 HOH A 153 464 153 HOH HOH . D 4 HOH A 154 465 154 HOH HOH . D 4 HOH A 155 466 155 HOH HOH . D 4 HOH A 156 467 156 HOH HOH . D 4 HOH A 157 468 157 HOH HOH . D 4 HOH A 158 469 158 HOH HOH . D 4 HOH A 159 470 159 HOH HOH . D 4 HOH A 160 471 160 HOH HOH . D 4 HOH A 161 472 161 HOH HOH . D 4 HOH A 162 473 162 HOH HOH . D 4 HOH A 163 474 163 HOH HOH . D 4 HOH A 164 475 164 HOH HOH . D 4 HOH A 165 476 165 HOH HOH . D 4 HOH A 166 477 166 HOH HOH . D 4 HOH A 167 478 167 HOH HOH . D 4 HOH A 168 479 168 HOH HOH . D 4 HOH A 169 480 169 HOH HOH . D 4 HOH A 170 481 170 HOH HOH . D 4 HOH A 171 482 171 HOH HOH . D 4 HOH A 172 483 172 HOH HOH . D 4 HOH A 173 484 173 HOH HOH . D 4 HOH A 174 485 174 HOH HOH . D 4 HOH A 175 486 175 HOH HOH . D 4 HOH A 176 487 176 HOH HOH . D 4 HOH A 177 488 177 HOH HOH . D 4 HOH A 178 489 178 HOH HOH . D 4 HOH A 179 490 179 HOH HOH . D 4 HOH A 180 491 180 HOH HOH . D 4 HOH A 181 492 181 HOH HOH . D 4 HOH A 182 493 182 HOH HOH . D 4 HOH A 183 494 183 HOH HOH . D 4 HOH A 184 495 184 HOH HOH . D 4 HOH A 185 496 185 HOH HOH . D 4 HOH A 186 497 186 HOH HOH . D 4 HOH A 187 498 187 HOH HOH . D 4 HOH A 188 499 188 HOH HOH . D 4 HOH A 189 500 189 HOH HOH . D 4 HOH A 190 501 190 HOH HOH . D 4 HOH A 191 502 191 HOH HOH . D 4 HOH A 192 503 192 HOH HOH . D 4 HOH A 193 504 193 HOH HOH . D 4 HOH A 194 505 194 HOH HOH . D 4 HOH A 195 506 195 HOH HOH . D 4 HOH A 196 507 196 HOH HOH . D 4 HOH A 197 508 197 HOH HOH . D 4 HOH A 198 509 198 HOH HOH . D 4 HOH A 199 510 199 HOH HOH . D 4 HOH A 200 511 200 HOH HOH . D 4 HOH A 201 512 201 HOH HOH . D 4 HOH A 202 513 202 HOH HOH . D 4 HOH A 203 514 203 HOH HOH . D 4 HOH A 204 515 204 HOH HOH . D 4 HOH A 205 516 205 HOH HOH . D 4 HOH A 206 517 206 HOH HOH . D 4 HOH A 207 518 207 HOH HOH . D 4 HOH A 208 519 208 HOH HOH . D 4 HOH A 209 520 209 HOH HOH . D 4 HOH A 210 521 210 HOH HOH . D 4 HOH A 211 522 211 HOH HOH . D 4 HOH A 212 523 212 HOH HOH . D 4 HOH A 213 524 213 HOH HOH . D 4 HOH A 214 525 214 HOH HOH . D 4 HOH A 215 526 215 HOH HOH . D 4 HOH A 216 527 216 HOH HOH . D 4 HOH A 217 528 217 HOH HOH . D 4 HOH A 218 529 218 HOH HOH . D 4 HOH A 219 530 219 HOH HOH . D 4 HOH A 220 531 220 HOH HOH . D 4 HOH A 221 532 221 HOH HOH . D 4 HOH A 222 533 222 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 -30.43 1.397 22.919 1 36.08 ? C1 GOL 3968 A 1 HETATM 2 O O1 GOL . . . C 3 -31.646 2.103 23.053 1 35.54 ? O1 GOL 3968 A 1 HETATM 3 C C2 GOL . . . C 3 -29.979 0.897 24.283 1 36.54 ? C2 GOL 3968 A 1 HETATM 4 O O2 GOL . . . C 3 -31.124 0.471 24.988 1 37.82 ? O2 GOL 3968 A 1 HETATM 5 C C3 GOL . . . C 3 -28.964 -0.248 24.194 1 35.19 ? C3 GOL 3968 A 1 HETATM 6 O O3 GOL . . . C 3 -28.732 -0.687 22.873 1 35.5 ? O3 GOL 3968 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #