data_3Q8I
#
_model_server_result.job_id            slhVNZX-MCD9Zl_K7TFQXw 
_model_server_result.datetime_utc      '2025-01-12 02:01:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3q8i 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":127}' 
#
_entry.id    3Q8I 
#
_exptl.entry_id    3Q8I 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              117.148 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            INDOLE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3Q8I 
_cell.length_a            55.239 
_cell.length_b            66.364 
_cell.length_c            33.666 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3Q8I 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E 1 1 
A,B,C,D,E 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 17 A CYS 17 1_555 A SG CYS 50 A CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
disulf ? disulf2 A SG CYS 46 A CYS 46 1_555 A SG CYS 103 A CYS 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf3 A SG CYS 92 A CYS 92 1_555 A SG CYS 112 A CYS 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
#
_chem_comp.formula           'C8 H7 N' 
_chem_comp.formula_weight    117.148 
_chem_comp.id                IND 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              INDOLE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 IND sing 173 n y 
N1 C8 IND sing 174 n y 
N1 HN1 IND sing 175 n n 
C2 C3 IND doub 176 n y 
C2 H2 IND sing 177 n n 
C3 C9 IND sing 178 n y 
C3 H3 IND sing 179 n n 
C4 C5 IND doub 180 n y 
C4 C9 IND sing 181 n y 
C4 H4 IND sing 182 n n 
C5 C6 IND sing 183 n y 
C5 H5 IND sing 184 n n 
C6 C7 IND doub 185 n y 
C6 H6 IND sing 186 n n 
C7 C8 IND sing 187 n y 
C7 H7 IND sing 188 n n 
C8 C9 IND doub 189 n y 
#
_atom_sites.entry_id                     3Q8I 
_atom_sites.fract_transf_matrix[1][1]    0.018103 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015068 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.029704 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PO4 A 1 125 1 PO4 PO4 . 
C 2 PO4 A 1 126 2 PO4 PO4 . 
D 3 IND A 1 127 1 IND IND . 
E 4 HOH A 1 128 2 HOH HOH . 
E 4 HOH A 2 129 3 HOH HOH . 
E 4 HOH A 3 130 4 HOH HOH . 
E 4 HOH A 4 131 5 HOH HOH . 
E 4 HOH A 5 132 132 HOH HOH . 
E 4 HOH A 6 133 6 HOH HOH . 
E 4 HOH A 7 134 7 HOH HOH . 
E 4 HOH A 8 135 135 HOH HOH . 
E 4 HOH A 9 136 8 HOH HOH . 
E 4 HOH A 10 137 10 HOH HOH . 
E 4 HOH A 11 138 138 HOH HOH . 
E 4 HOH A 12 139 11 HOH HOH . 
E 4 HOH A 13 140 140 HOH HOH . 
E 4 HOH A 14 141 12 HOH HOH . 
E 4 HOH A 15 142 13 HOH HOH . 
E 4 HOH A 16 143 14 HOH HOH . 
E 4 HOH A 17 144 15 HOH HOH . 
E 4 HOH A 18 145 17 HOH HOH . 
E 4 HOH A 19 146 18 HOH HOH . 
E 4 HOH A 20 147 19 HOH HOH . 
E 4 HOH A 21 148 20 HOH HOH . 
E 4 HOH A 22 149 21 HOH HOH . 
E 4 HOH A 23 150 22 HOH HOH . 
E 4 HOH A 24 151 23 HOH HOH . 
E 4 HOH A 25 152 24 HOH HOH . 
E 4 HOH A 26 153 26 HOH HOH . 
E 4 HOH A 27 154 27 HOH HOH . 
E 4 HOH A 28 155 28 HOH HOH . 
E 4 HOH A 29 156 29 HOH HOH . 
E 4 HOH A 30 157 32 HOH HOH . 
E 4 HOH A 31 158 36 HOH HOH . 
E 4 HOH A 32 159 64 HOH HOH . 
E 4 HOH A 33 160 65 HOH HOH . 
E 4 HOH A 34 161 67 HOH HOH . 
E 4 HOH A 35 162 68 HOH HOH . 
E 4 HOH A 36 163 70 HOH HOH . 
E 4 HOH A 37 164 74 HOH HOH . 
E 4 HOH A 38 165 75 HOH HOH . 
E 4 HOH A 39 166 166 HOH HOH . 
E 4 HOH A 40 167 167 HOH HOH . 
E 4 HOH A 41 168 168 HOH HOH . 
E 4 HOH A 42 169 169 HOH HOH . 
E 4 HOH A 43 170 170 HOH HOH . 
E 4 HOH A 44 171 171 HOH HOH . 
E 4 HOH A 45 172 172 HOH HOH . 
E 4 HOH A 46 173 173 HOH HOH . 
E 4 HOH A 47 174 174 HOH HOH . 
E 4 HOH A 48 175 175 HOH HOH . 
E 4 HOH A 49 176 176 HOH HOH . 
E 4 HOH A 50 177 177 HOH HOH . 
E 4 HOH A 51 178 178 HOH HOH . 
E 4 HOH A 52 179 179 HOH HOH . 
E 4 HOH A 53 180 77 HOH HOH . 
E 4 HOH A 54 181 79 HOH HOH . 
E 4 HOH A 55 182 182 HOH HOH . 
E 4 HOH A 56 183 80 HOH HOH . 
E 4 HOH A 57 184 184 HOH HOH . 
E 4 HOH A 58 185 185 HOH HOH . 
E 4 HOH A 59 186 186 HOH HOH . 
E 4 HOH A 60 187 187 HOH HOH . 
E 4 HOH A 61 188 188 HOH HOH . 
E 4 HOH A 62 189 189 HOH HOH . 
E 4 HOH A 63 190 190 HOH HOH . 
E 4 HOH A 64 191 191 HOH HOH . 
E 4 HOH A 65 192 192 HOH HOH . 
E 4 HOH A 66 193 193 HOH HOH . 
E 4 HOH A 67 194 194 HOH HOH . 
E 4 HOH A 68 195 195 HOH HOH . 
E 4 HOH A 69 196 196 HOH HOH . 
E 4 HOH A 70 197 197 HOH HOH . 
E 4 HOH A 71 198 81 HOH HOH . 
E 4 HOH A 72 199 82 HOH HOH . 
E 4 HOH A 73 200 84 HOH HOH . 
E 4 HOH A 74 201 85 HOH HOH . 
E 4 HOH A 75 202 86 HOH HOH . 
E 4 HOH A 76 203 87 HOH HOH . 
E 4 HOH A 77 204 88 HOH HOH . 
E 4 HOH A 78 205 89 HOH HOH . 
E 4 HOH A 79 206 92 HOH HOH . 
E 4 HOH A 80 207 96 HOH HOH . 
E 4 HOH A 81 208 100 HOH HOH . 
E 4 HOH A 82 209 103 HOH HOH . 
E 4 HOH A 83 210 106 HOH HOH . 
E 4 HOH A 84 211 117 HOH HOH . 
E 4 HOH A 85 212 118 HOH HOH . 
E 4 HOH A 86 213 119 HOH HOH . 
E 4 HOH A 87 214 120 HOH HOH . 
E 4 HOH A 88 215 121 HOH HOH . 
E 4 HOH A 89 216 122 HOH HOH . 
E 4 HOH A 90 217 123 HOH HOH . 
E 4 HOH A 91 218 125 HOH HOH . 
E 4 HOH A 92 219 126 HOH HOH . 
E 4 HOH A 93 220 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 IND . . . D 3 12.369 -5.924 19.842 0.6 28.71 ? N1 IND 127 A 1 
HETATM 2 C C2 IND . . . D 3 11.148 -5.331 19.621 0.6 28.96 ? C2 IND 127 A 1 
HETATM 3 C C3 IND . . . D 3 11.02 -4.105 20.268 0.6 28.27 ? C3 IND 127 A 1 
HETATM 4 C C4 IND . . . D 3 12.773 -2.947 21.712 0.6 25.91 ? C4 IND 127 A 1 
HETATM 5 C C5 IND . . . D 3 14.068 -3.071 22.223 0.6 24.35 ? C5 IND 127 A 1 
HETATM 6 C C6 IND . . . D 3 14.877 -4.174 21.947 0.6 23.4 ? C6 IND 127 A 1 
HETATM 7 C C7 IND . . . D 3 14.425 -5.222 21.146 0.6 26.62 ? C7 IND 127 A 1 
HETATM 8 C C8 IND . . . D 3 13.136 -5.144 20.626 0.6 27.85 ? C8 IND 127 A 1 
HETATM 9 C C9 IND . . . D 3 12.29 -3.972 20.908 0.6 26.96 ? C9 IND 127 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           390 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           9 
#