data_3Q8R # _model_server_result.job_id ox7ftI3DEvIfuyPUTMqEVQ _model_server_result.datetime_utc '2024-12-01 12:37:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3q8r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":423}' # _entry.id 3Q8R # _exptl.entry_id 3Q8R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3Q8R _cell.length_a 98.29 _cell.length_b 98.29 _cell.length_c 202.582 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3Q8R _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O3' 8OG 4 T 8OG 840 1_555 B P DG 5 T DG 841 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.518 ? covale ? covale2 B O3' 8OG 4 T 8OG 840 1_555 B P DG 5 T DG 841 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.606 ? metalc ? metalc1 A OD1 ASP 34 B ASP 34 1_555 F MG MG . B MG 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc2 A O LEU 35 B LEU 35 1_555 F MG MG . B MG 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? metalc ? metalc3 A O LYS 237 B LYS 237 1_555 E MG MG . B MG 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc4 A O ILE 239 B ILE 239 1_555 E MG MG . B MG 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.606 ? metalc ? metalc5 A O ILE 242 B ILE 242 1_555 E MG MG . B MG 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc6 D O2G DGT . B DGT 421 1_555 F MG MG . B MG 423 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc7 D O2A DGT . B DGT 421 1_555 F MG MG . B MG 423 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.767 ? metalc ? metalc8 D O1B DGT . B DGT 421 1_555 F MG MG . B MG 423 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.82 ? metalc ? metalc9 E MG MG . B MG 422 1_555 G O HOH . B HOH 495 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.789 ? metalc ? metalc10 E MG MG . B MG 422 1_555 I O HOH . P HOH 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.715 ? metalc ? metalc11 E MG MG . B MG 422 1_555 C OP1 DC 6 P DC 872 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.562 ? hydrog WATSON-CRICK hydrog1 B N1 DG 5 T DG 841 1_555 C N3 DC 7 P DC 873 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N2 DG 5 T DG 841 1_555 C O2 DC 7 P DC 873 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B O6 DG 5 T DG 841 1_555 C N4 DC 7 P DC 873 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N1 DG 6 T DG 842 1_555 C N3 DC 6 P DC 872 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B N2 DG 6 T DG 842 1_555 C O2 DC 6 P DC 872 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B O6 DG 6 T DG 842 1_555 C N4 DC 6 P DC 872 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N1 DG 7 T DG 843 1_555 C N3 DC 5 P DC 871 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B N2 DG 7 T DG 843 1_555 C O2 DC 5 P DC 871 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B O6 DG 7 T DG 843 1_555 C N4 DC 5 P DC 871 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B N3 DT 8 T DT 844 1_555 C N1 DA 4 P DA 870 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B O4 DT 8 T DT 844 1_555 C N6 DA 4 P DA 870 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B N3 DC 9 T DC 845 1_555 C N1 DG 3 P DG 869 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B N4 DC 9 T DC 845 1_555 C O6 DG 3 P DG 869 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B O2 DC 9 T DC 845 1_555 C N2 DG 3 P DG 869 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B N3 DC 10 T DC 846 1_555 C N1 DG 2 P DG 868 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B N4 DC 10 T DC 846 1_555 C O6 DG 2 P DG 868 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B O2 DC 10 T DC 846 1_555 C N2 DG 2 P DG 868 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B N3 DT 11 T DT 847 1_555 C N1 DA 1 P DA 867 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 B O4 DT 11 T DT 847 1_555 C N6 DA 1 P DA 867 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3Q8R _atom_sites.fract_transf_matrix[1][1] 0.010174 _atom_sites.fract_transf_matrix[1][2] 0.005874 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011748 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004936 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 DGT B 1 421 1 DGT DGT . E 5 MG B 1 422 1 MG MG . F 5 MG B 1 423 1 MG MG . G 6 HOH B 1 424 1 HOH HOH . G 6 HOH B 2 425 2 HOH HOH . G 6 HOH B 3 426 3 HOH HOH . G 6 HOH B 4 427 4 HOH HOH . G 6 HOH B 5 428 6 HOH HOH . G 6 HOH B 6 429 7 HOH HOH . G 6 HOH B 7 430 8 HOH HOH . G 6 HOH B 8 431 9 HOH HOH . G 6 HOH B 9 432 10 HOH HOH . G 6 HOH B 10 433 11 HOH HOH . G 6 HOH B 11 434 12 HOH HOH . G 6 HOH B 12 435 13 HOH HOH . G 6 HOH B 13 436 14 HOH HOH . G 6 HOH B 14 437 15 HOH HOH . G 6 HOH B 15 438 17 HOH HOH . G 6 HOH B 16 439 18 HOH HOH . G 6 HOH B 17 440 20 HOH HOH . G 6 HOH B 18 441 22 HOH HOH . G 6 HOH B 19 442 23 HOH HOH . G 6 HOH B 20 443 24 HOH HOH . G 6 HOH B 21 444 25 HOH HOH . G 6 HOH B 22 445 26 HOH HOH . G 6 HOH B 23 446 27 HOH HOH . G 6 HOH B 24 447 28 HOH HOH . G 6 HOH B 25 448 29 HOH HOH . G 6 HOH B 26 449 30 HOH HOH . G 6 HOH B 27 450 31 HOH HOH . G 6 HOH B 28 451 32 HOH HOH . G 6 HOH B 29 452 34 HOH HOH . G 6 HOH B 30 453 35 HOH HOH . G 6 HOH B 31 454 36 HOH HOH . G 6 HOH B 32 455 37 HOH HOH . G 6 HOH B 33 456 38 HOH HOH . G 6 HOH B 34 457 39 HOH HOH . G 6 HOH B 35 458 40 HOH HOH . G 6 HOH B 36 459 41 HOH HOH . G 6 HOH B 37 460 42 HOH HOH . G 6 HOH B 38 461 44 HOH HOH . G 6 HOH B 39 462 46 HOH HOH . G 6 HOH B 40 463 48 HOH HOH . G 6 HOH B 41 464 49 HOH HOH . G 6 HOH B 42 465 52 HOH HOH . G 6 HOH B 43 466 53 HOH HOH . G 6 HOH B 44 467 54 HOH HOH . G 6 HOH B 45 468 55 HOH HOH . G 6 HOH B 46 469 56 HOH HOH . G 6 HOH B 47 470 57 HOH HOH . G 6 HOH B 48 471 58 HOH HOH . G 6 HOH B 49 472 59 HOH HOH . G 6 HOH B 50 473 60 HOH HOH . G 6 HOH B 51 474 61 HOH HOH . G 6 HOH B 52 475 63 HOH HOH . G 6 HOH B 53 476 64 HOH HOH . G 6 HOH B 54 477 65 HOH HOH . G 6 HOH B 55 478 67 HOH HOH . G 6 HOH B 56 479 68 HOH HOH . G 6 HOH B 57 480 69 HOH HOH . G 6 HOH B 58 481 70 HOH HOH . G 6 HOH B 59 482 71 HOH HOH . G 6 HOH B 60 483 72 HOH HOH . G 6 HOH B 61 484 74 HOH HOH . G 6 HOH B 62 485 75 HOH HOH . G 6 HOH B 63 486 76 HOH HOH . G 6 HOH B 64 487 77 HOH HOH . G 6 HOH B 65 488 78 HOH HOH . G 6 HOH B 66 489 79 HOH HOH . G 6 HOH B 67 490 80 HOH HOH . G 6 HOH B 68 491 81 HOH HOH . G 6 HOH B 69 492 82 HOH HOH . G 6 HOH B 70 493 83 HOH HOH . G 6 HOH B 71 494 84 HOH HOH . G 6 HOH B 72 495 85 HOH HOH . G 6 HOH B 73 496 86 HOH HOH . G 6 HOH B 74 497 87 HOH HOH . G 6 HOH B 75 498 88 HOH HOH . G 6 HOH B 76 499 89 HOH HOH . G 6 HOH B 77 500 90 HOH HOH . G 6 HOH B 78 501 91 HOH HOH . G 6 HOH B 79 502 92 HOH HOH . G 6 HOH B 80 503 93 HOH HOH . G 6 HOH B 81 504 94 HOH HOH . G 6 HOH B 82 505 95 HOH HOH . G 6 HOH B 83 506 96 HOH HOH . G 6 HOH B 84 507 97 HOH HOH . G 6 HOH B 85 508 98 HOH HOH . G 6 HOH B 86 509 99 HOH HOH . G 6 HOH B 87 510 100 HOH HOH . G 6 HOH B 88 511 101 HOH HOH . G 6 HOH B 89 512 103 HOH HOH . G 6 HOH B 90 513 104 HOH HOH . G 6 HOH B 91 514 105 HOH HOH . G 6 HOH B 92 515 106 HOH HOH . G 6 HOH B 93 516 107 HOH HOH . G 6 HOH B 94 517 108 HOH HOH . G 6 HOH B 95 518 109 HOH HOH . G 6 HOH B 96 519 110 HOH HOH . G 6 HOH B 97 520 113 HOH HOH . G 6 HOH B 98 521 114 HOH HOH . G 6 HOH B 99 522 115 HOH HOH . G 6 HOH B 100 523 116 HOH HOH . G 6 HOH B 101 524 117 HOH HOH . G 6 HOH B 102 525 118 HOH HOH . G 6 HOH B 103 526 120 HOH HOH . G 6 HOH B 104 527 121 HOH HOH . G 6 HOH B 105 528 122 HOH HOH . G 6 HOH B 106 529 123 HOH HOH . G 6 HOH B 107 530 124 HOH HOH . G 6 HOH B 108 531 125 HOH HOH . G 6 HOH B 109 532 126 HOH HOH . G 6 HOH B 110 533 127 HOH HOH . G 6 HOH B 111 534 129 HOH HOH . G 6 HOH B 112 535 131 HOH HOH . G 6 HOH B 113 536 132 HOH HOH . G 6 HOH B 114 537 135 HOH HOH . G 6 HOH B 115 538 137 HOH HOH . G 6 HOH B 116 539 138 HOH HOH . G 6 HOH B 117 540 141 HOH HOH . G 6 HOH B 118 541 142 HOH HOH . G 6 HOH B 119 542 143 HOH HOH . G 6 HOH B 120 543 144 HOH HOH . G 6 HOH B 121 544 145 HOH HOH . G 6 HOH B 122 545 146 HOH HOH . G 6 HOH B 123 546 147 HOH HOH . G 6 HOH B 124 547 148 HOH HOH . G 6 HOH B 125 548 149 HOH HOH . G 6 HOH B 126 549 151 HOH HOH . G 6 HOH B 127 550 152 HOH HOH . G 6 HOH B 128 551 153 HOH HOH . G 6 HOH B 129 552 154 HOH HOH . G 6 HOH B 130 553 155 HOH HOH . G 6 HOH B 131 554 156 HOH HOH . G 6 HOH B 132 555 157 HOH HOH . G 6 HOH B 133 556 102 HOH HOH . G 6 HOH B 134 557 130 HOH HOH . H 6 HOH T 1 62 62 HOH HOH . H 6 HOH T 2 111 111 HOH HOH . H 6 HOH T 3 112 112 HOH HOH . I 6 HOH P 1 5 5 HOH HOH . I 6 HOH P 2 21 21 HOH HOH . I 6 HOH P 3 45 45 HOH HOH . I 6 HOH P 4 47 47 HOH HOH . I 6 HOH P 5 50 50 HOH HOH . I 6 HOH P 6 51 51 HOH HOH . I 6 HOH P 7 119 119 HOH HOH . I 6 HOH P 8 128 128 HOH HOH . I 6 HOH P 9 133 133 HOH HOH . I 6 HOH P 10 134 134 HOH HOH . I 6 HOH P 11 136 136 HOH HOH . I 6 HOH P 12 139 139 HOH HOH . I 6 HOH P 13 140 140 HOH HOH . I 6 HOH P 14 150 150 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 5 _atom_site.Cartn_x 4.308 _atom_site.Cartn_y -18.755 _atom_site.Cartn_z -13.531 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 60.18 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 423 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #