data_3Q8W # _model_server_result.job_id gHoCZtkOfNl42GMAn3OQJA _model_server_result.datetime_utc '2025-03-01 04:19:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3q8w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1}' # _entry.id 3Q8W # _exptl.entry_id 3Q8W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 552.609 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(4-{[({(2R)-3-[(3R)-3-amino-4-(2,4,5-trifluorophenyl)butanoyl]-1,3-thiazolidin-2-yl}carbonyl)amino]methyl}phenyl)-D-valine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3Q8W _cell.length_a 118.412 _cell.length_b 124.501 _cell.length_c 133.119 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3Q8W _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 290 A CYS 328 1_555 A SG CYS 301 A CYS 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf2 A SG CYS 347 A CYS 385 1_555 A SG CYS 356 A CYS 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf3 A SG CYS 406 A CYS 444 1_555 A SG CYS 409 A CYS 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf4 A SG CYS 416 A CYS 454 1_555 A SG CYS 434 A CYS 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 A SG CYS 611 A CYS 649 1_555 A SG CYS 724 A CYS 762 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf6 B SG CYS 290 B CYS 328 1_555 B SG CYS 301 B CYS 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf7 B SG CYS 347 B CYS 385 1_555 B SG CYS 356 B CYS 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf8 B SG CYS 406 B CYS 444 1_555 B SG CYS 409 B CYS 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf9 B SG CYS 416 B CYS 454 1_555 B SG CYS 434 B CYS 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf10 B SG CYS 611 B CYS 649 1_555 B SG CYS 724 B CYS 762 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? # _chem_comp.formula 'C26 H31 F3 N4 O4 S' _chem_comp.formula_weight 552.609 _chem_comp.id AZV _chem_comp.mon_nstd_flag . _chem_comp.name N-(4-{[({(2R)-3-[(3R)-3-amino-4-(2,4,5-trifluorophenyl)butanoyl]-1,3-thiazolidin-2-yl}carbonyl)amino]methyl}phenyl)-D-valine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O AZV doub 70 n n C CA AZV sing 71 n n C OXT AZV sing 72 n n N CA AZV sing 73 n n N CAZ AZV sing 74 n n CA CB AZV sing 75 n n CB CG1 AZV sing 76 n n CB CG2 AZV sing 77 n n CAA NAB AZV sing 78 n n CAA CAR AZV sing 79 n n CAA SBC AZV sing 80 n n NAB CAC AZV sing 81 n n NAB CBA AZV sing 82 n n CAC OAD AZV doub 83 n n CAC CAE AZV sing 84 n n CAE CAF AZV sing 85 n n CAF NAG AZV sing 86 n n CAF CAH AZV sing 87 n n CAH CAI AZV sing 88 n n CAI CAJ AZV doub 89 n y CAI CAP AZV sing 90 n y CAJ CAK AZV sing 91 n y CAK FAL AZV sing 92 n n CAK CAM AZV doub 93 n y CAM FAN AZV sing 94 n n CAM CAO AZV sing 95 n y CAO CAP AZV doub 96 n y CAP FAQ AZV sing 97 n n CAR OAS AZV doub 98 n n CAR NAT AZV sing 99 n n NAT CAU AZV sing 100 n n CAU CAW AZV sing 101 n n CAV CAW AZV doub 102 n y CAV CBD AZV sing 103 n y CAW CAX AZV sing 104 n y CAX CAY AZV doub 105 n y CAY CAZ AZV sing 106 n y CAZ CBD AZV doub 107 n y CBA CBB AZV sing 108 n n CBB SBC AZV sing 109 n n N HN AZV sing 110 n n CA HA AZV sing 111 n n CB HB AZV sing 112 n n CAA HAA AZV sing 113 n n CAE HAE AZV sing 114 n n CAE HAEA AZV sing 115 n n CAF HAF AZV sing 116 n n NAG HNAG AZV sing 117 n n NAG HNAA AZV sing 118 n n CAH HAH AZV sing 119 n n CAH HAHA AZV sing 120 n n CAJ HAJ AZV sing 121 n n CAO HAO AZV sing 122 n n NAT HNAT AZV sing 123 n n CAU HAU AZV sing 124 n n CAU HAUA AZV sing 125 n n CAV HAV AZV sing 126 n n CAX HAX AZV sing 127 n n CAY HAY AZV sing 128 n n CBA HBA AZV sing 129 n n CBA HBAA AZV sing 130 n n CBB HBB AZV sing 131 n n CBB HBBA AZV sing 132 n n CBD HBD AZV sing 133 n n CG1 HG1 AZV sing 134 n n CG1 HG1A AZV sing 135 n n CG1 HG1B AZV sing 136 n n CG2 HG2 AZV sing 137 n n CG2 HG2A AZV sing 138 n n CG2 HG2B AZV sing 139 n n OXT HOXT AZV sing 140 n n # _atom_sites.entry_id 3Q8W _atom_sites.fract_transf_matrix[1][1] 0.008445 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008032 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007512 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AZV A 1 1 1 AZV DRG . D 2 AZV B 1 1 1 AZV DRG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C AZV . . . C 2 -22.181 -10.21 40.275 1 65.11 ? C AZV 1 A 1 HETATM 2 N N AZV . . . C 2 -20.874 -12.107 41.171 1 68.43 ? N AZV 1 A 1 HETATM 3 O O AZV . . . C 2 -22.224 -8.962 40.27 1 63.61 ? O AZV 1 A 1 HETATM 4 C CA AZV . . . C 2 -21.551 -10.848 41.511 1 66.51 ? CA AZV 1 A 1 HETATM 5 C CB AZV . . . C 2 -22.573 -11.098 42.621 1 66.8 ? CB AZV 1 A 1 HETATM 6 C CAA AZV . . . C 2 -15.125 -11.681 35.077 1 72.38 ? CAA AZV 1 A 1 HETATM 7 N NAB AZV . . . C 2 -16.259 -11.435 34.425 1 69.52 ? NAB AZV 1 A 1 HETATM 8 C CAC AZV . . . C 2 -17.505 -11.689 34.824 1 67.45 ? CAC AZV 1 A 1 HETATM 9 O OAD AZV . . . C 2 -17.724 -12.49 35.731 1 67.34 ? OAD AZV 1 A 1 HETATM 10 C CAE AZV . . . C 2 -18.628 -11.186 33.916 1 65.86 ? CAE AZV 1 A 1 HETATM 11 C CAF AZV . . . C 2 -19.906 -12.031 33.876 1 64.25 ? CAF AZV 1 A 1 HETATM 12 N NAG AZV . . . C 2 -20.844 -11.408 32.931 1 64.37 ? NAG AZV 1 A 1 HETATM 13 C CAH AZV . . . C 2 -20.579 -12.11 35.248 1 61.15 ? CAH AZV 1 A 1 HETATM 14 C CAI AZV . . . C 2 -21.969 -12.739 35.124 1 57.43 ? CAI AZV 1 A 1 HETATM 15 C CAJ AZV . . . C 2 -22.059 -14.02 34.59 1 56.21 ? CAJ AZV 1 A 1 HETATM 16 C CAK AZV . . . C 2 -23.29 -14.634 34.393 1 53.95 ? CAK AZV 1 A 1 HETATM 17 F FAL AZV . . . C 2 -23.338 -15.878 33.876 1 53.6 ? FAL AZV 1 A 1 HETATM 18 C CAM AZV . . . C 2 -24.459 -13.966 34.731 1 53.03 ? CAM AZV 1 A 1 HETATM 19 F FAN AZV . . . C 2 -25.665 -14.534 34.536 1 47.81 ? FAN AZV 1 A 1 HETATM 20 C CAO AZV . . . C 2 -24.382 -12.687 35.268 1 54.03 ? CAO AZV 1 A 1 HETATM 21 C CAP AZV . . . C 2 -23.146 -12.084 35.462 1 55.76 ? CAP AZV 1 A 1 HETATM 22 F FAQ AZV . . . C 2 -23.096 -10.853 36.006 1 57.42 ? FAQ AZV 1 A 1 HETATM 23 C CAR AZV . . . C 2 -14.924 -12.173 36.513 1 73.72 ? CAR AZV 1 A 1 HETATM 24 O OAS AZV . . . C 2 -13.931 -12.815 36.841 1 74.11 ? OAS AZV 1 A 1 HETATM 25 N NAT AZV . . . C 2 -15.827 -11.71 37.377 1 73.78 ? NAT AZV 1 A 1 HETATM 26 C CAU AZV . . . C 2 -15.77 -12.024 38.809 1 73.01 ? CAU AZV 1 A 1 HETATM 27 C CAV AZV . . . C 2 -17.893 -10.838 39.556 1 71.24 ? CAV AZV 1 A 1 HETATM 28 C CAW AZV . . . C 2 -17.176 -12.02 39.412 1 72.57 ? CAW AZV 1 A 1 HETATM 29 C CAX AZV . . . C 2 -17.731 -13.23 39.803 1 72.94 ? CAX AZV 1 A 1 HETATM 30 C CAY AZV . . . C 2 -19.007 -13.263 40.356 1 71.77 ? CAY AZV 1 A 1 HETATM 31 C CAZ AZV . . . C 2 -19.72 -12.082 40.514 1 70.29 ? CAZ AZV 1 A 1 HETATM 32 C CBA AZV . . . C 2 -16.023 -10.398 33.407 1 69.4 ? CBA AZV 1 A 1 HETATM 33 C CBB AZV . . . C 2 -14.813 -10.862 32.594 1 71.4 ? CBB AZV 1 A 1 HETATM 34 S SBC AZV . . . C 2 -13.788 -11.495 33.966 1 73.91 ? SBC AZV 1 A 1 HETATM 35 C CBD AZV . . . C 2 -19.168 -10.872 40.11 1 70.24 ? CBD AZV 1 A 1 HETATM 36 C CG1 AZV . . . C 2 -21.855 -11.277 43.961 1 67.48 ? CG1 AZV 1 A 1 HETATM 37 C CG2 AZV . . . C 2 -23.444 -12.316 42.306 1 65.8 ? CG2 AZV 1 A 1 HETATM 38 O OXT AZV . . . C 2 -22.57 -10.971 39.363 1 63.49 ? OXT AZV 1 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 522 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 38 #