data_3Q8W
#
_model_server_result.job_id            9PCVrimYTPIY8VvP3LhL8g 
_model_server_result.datetime_utc      '2025-03-01 04:36:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3q8w 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1}' 
#
_entry.id    3Q8W 
#
_exptl.entry_id    3Q8W 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              552.609 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-(4-{[({(2R)-3-[(3R)-3-amino-4-(2,4,5-trifluorophenyl)butanoyl]-1,3-thiazolidin-2-yl}carbonyl)amino]methyl}phenyl)-D-valine 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3Q8W 
_cell.length_a            118.412 
_cell.length_b            124.501 
_cell.length_c            133.119 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3Q8W 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 290 A CYS 328 1_555 A SG CYS 301 A CYS 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf2 A SG CYS 347 A CYS 385 1_555 A SG CYS 356 A CYS 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf3 A SG CYS 406 A CYS 444 1_555 A SG CYS 409 A CYS 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf4 A SG CYS 416 A CYS 454 1_555 A SG CYS 434 A CYS 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf5 A SG CYS 611 A CYS 649 1_555 A SG CYS 724 A CYS 762 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf6 B SG CYS 290 B CYS 328 1_555 B SG CYS 301 B CYS 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf7 B SG CYS 347 B CYS 385 1_555 B SG CYS 356 B CYS 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf8 B SG CYS 406 B CYS 444 1_555 B SG CYS 409 B CYS 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf9 B SG CYS 416 B CYS 454 1_555 B SG CYS 434 B CYS 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf10 B SG CYS 611 B CYS 649 1_555 B SG CYS 724 B CYS 762 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
#
_chem_comp.formula           'C26 H31 F3 N4 O4 S' 
_chem_comp.formula_weight    552.609 
_chem_comp.id                AZV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-(4-{[({(2R)-3-[(3R)-3-amino-4-(2,4,5-trifluorophenyl)butanoyl]-1,3-thiazolidin-2-yl}carbonyl)amino]methyl}phenyl)-D-valine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C O AZV doub 70 n n 
C CA AZV sing 71 n n 
C OXT AZV sing 72 n n 
N CA AZV sing 73 n n 
N CAZ AZV sing 74 n n 
CA CB AZV sing 75 n n 
CB CG1 AZV sing 76 n n 
CB CG2 AZV sing 77 n n 
CAA NAB AZV sing 78 n n 
CAA CAR AZV sing 79 n n 
CAA SBC AZV sing 80 n n 
NAB CAC AZV sing 81 n n 
NAB CBA AZV sing 82 n n 
CAC OAD AZV doub 83 n n 
CAC CAE AZV sing 84 n n 
CAE CAF AZV sing 85 n n 
CAF NAG AZV sing 86 n n 
CAF CAH AZV sing 87 n n 
CAH CAI AZV sing 88 n n 
CAI CAJ AZV doub 89 n y 
CAI CAP AZV sing 90 n y 
CAJ CAK AZV sing 91 n y 
CAK FAL AZV sing 92 n n 
CAK CAM AZV doub 93 n y 
CAM FAN AZV sing 94 n n 
CAM CAO AZV sing 95 n y 
CAO CAP AZV doub 96 n y 
CAP FAQ AZV sing 97 n n 
CAR OAS AZV doub 98 n n 
CAR NAT AZV sing 99 n n 
NAT CAU AZV sing 100 n n 
CAU CAW AZV sing 101 n n 
CAV CAW AZV doub 102 n y 
CAV CBD AZV sing 103 n y 
CAW CAX AZV sing 104 n y 
CAX CAY AZV doub 105 n y 
CAY CAZ AZV sing 106 n y 
CAZ CBD AZV doub 107 n y 
CBA CBB AZV sing 108 n n 
CBB SBC AZV sing 109 n n 
N HN AZV sing 110 n n 
CA HA AZV sing 111 n n 
CB HB AZV sing 112 n n 
CAA HAA AZV sing 113 n n 
CAE HAE AZV sing 114 n n 
CAE HAEA AZV sing 115 n n 
CAF HAF AZV sing 116 n n 
NAG HNAG AZV sing 117 n n 
NAG HNAA AZV sing 118 n n 
CAH HAH AZV sing 119 n n 
CAH HAHA AZV sing 120 n n 
CAJ HAJ AZV sing 121 n n 
CAO HAO AZV sing 122 n n 
NAT HNAT AZV sing 123 n n 
CAU HAU AZV sing 124 n n 
CAU HAUA AZV sing 125 n n 
CAV HAV AZV sing 126 n n 
CAX HAX AZV sing 127 n n 
CAY HAY AZV sing 128 n n 
CBA HBA AZV sing 129 n n 
CBA HBAA AZV sing 130 n n 
CBB HBB AZV sing 131 n n 
CBB HBBA AZV sing 132 n n 
CBD HBD AZV sing 133 n n 
CG1 HG1 AZV sing 134 n n 
CG1 HG1A AZV sing 135 n n 
CG1 HG1B AZV sing 136 n n 
CG2 HG2 AZV sing 137 n n 
CG2 HG2A AZV sing 138 n n 
CG2 HG2B AZV sing 139 n n 
OXT HOXT AZV sing 140 n n 
#
_atom_sites.entry_id                     3Q8W 
_atom_sites.fract_transf_matrix[1][1]    0.008445 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008032 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007512 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 AZV A 1 1 1 AZV DRG . 
D 2 AZV B 1 1 1 AZV DRG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C AZV . . . D 2 -62.246 -6.44 36.017 1 71.11 ? C AZV 1 B 1 
HETATM 2 N N AZV . . . D 2 -64.019 -5.953 37.654 1 72.21 ? N AZV 1 B 1 
HETATM 3 O O AZV . . . D 2 -61.626 -7.25 35.296 1 70.9 ? O AZV 1 B 1 
HETATM 4 C CA AZV . . . D 2 -63.332 -7.024 36.922 1 72.09 ? CA AZV 1 B 1 
HETATM 5 C CB AZV . . . D 2 -62.785 -8.058 37.91 1 73.01 ? CB AZV 1 B 1 
HETATM 6 C CAA AZV . . . D 2 -68.356 -0.01 33.247 1 62.21 ? CAA AZV 1 B 1 
HETATM 7 N NAB AZV . . . D 2 -67.102 0.378 33.047 1 61.09 ? NAB AZV 1 B 1 
HETATM 8 C CAC AZV . . . D 2 -66.013 -0.01 33.708 1 59.83 ? CAC AZV 1 B 1 
HETATM 9 O OAD AZV . . . D 2 -66.105 -0.574 34.797 1 57.45 ? OAD AZV 1 B 1 
HETATM 10 C CAE AZV . . . D 2 -64.676 0.518 33.177 1 58.86 ? CAE AZV 1 B 1 
HETATM 11 C CAF AZV . . . D 2 -63.54 0.658 34.191 1 58.44 ? CAF AZV 1 B 1 
HETATM 12 N NAG AZV . . . D 2 -62.334 1.103 33.477 1 55.93 ? NAG AZV 1 B 1 
HETATM 13 C CAH AZV . . . D 2 -63.243 -0.679 34.874 1 58.15 ? CAH AZV 1 B 1 
HETATM 14 C CAI AZV . . . D 2 -62.086 -0.522 35.861 1 58.55 ? CAI AZV 1 B 1 
HETATM 15 C CAJ AZV . . . D 2 -60.893 -1.164 35.581 1 58.09 ? CAJ AZV 1 B 1 
HETATM 16 C CAK AZV . . . D 2 -59.79 -1.074 36.418 1 59.21 ? CAK AZV 1 B 1 
HETATM 17 F FAL AZV . . . D 2 -58.698 -1.805 36.118 1 60.29 ? FAL AZV 1 B 1 
HETATM 18 C CAM AZV . . . D 2 -59.823 -0.322 37.577 1 57.97 ? CAM AZV 1 B 1 
HETATM 19 F FAN AZV . . . D 2 -58.772 -0.211 38.412 1 57.82 ? FAN AZV 1 B 1 
HETATM 20 C CAO AZV . . . D 2 -61.01 0.327 37.863 1 57.49 ? CAO AZV 1 B 1 
HETATM 21 C CAP AZV . . . D 2 -62.111 0.224 37.026 1 58.48 ? CAP AZV 1 B 1 
HETATM 22 F FAQ AZV . . . D 2 -63.237 0.879 37.372 1 58.16 ? FAQ AZV 1 B 1 
HETATM 23 C CAR AZV . . . D 2 -68.854 -1.113 34.185 1 63.17 ? CAR AZV 1 B 1 
HETATM 24 O OAS AZV . . . D 2 -70.028 -1.178 34.538 1 62.43 ? OAS AZV 1 B 1 
HETATM 25 N NAT AZV . . . D 2 -67.944 -2.05 34.416 1 64.57 ? NAT AZV 1 B 1 
HETATM 26 C CAU AZV . . . D 2 -68.261 -3.216 35.251 1 67.62 ? CAU AZV 1 B 1 
HETATM 27 C CAV AZV . . . D 2 -66.166 -4.646 35.056 1 70.32 ? CAV AZV 1 B 1 
HETATM 28 C CAW AZV . . . D 2 -66.98 -3.816 35.82 1 70.09 ? CAW AZV 1 B 1 
HETATM 29 C CAX AZV . . . D 2 -66.721 -3.63 37.172 1 72.27 ? CAX AZV 1 B 1 
HETATM 30 C CAY AZV . . . D 2 -65.67 -4.304 37.776 1 73.43 ? CAY AZV 1 B 1 
HETATM 31 C CAZ AZV . . . D 2 -64.878 -5.162 37.023 1 72.52 ? CAZ AZV 1 B 1 
HETATM 32 C CBA AZV . . . D 2 -66.971 0.905 31.676 1 62.04 ? CBA AZV 1 B 1 
HETATM 33 C CBB AZV . . . D 2 -68.099 1.92 31.483 1 62.72 ? CBB AZV 1 B 1 
HETATM 34 S SBC AZV . . . D 2 -69.436 0.998 32.318 1 63.64 ? SBC AZV 1 B 1 
HETATM 35 C CBD AZV . . . D 2 -65.115 -5.321 35.661 1 71.7 ? CBD AZV 1 B 1 
HETATM 36 C CG1 AZV . . . D 2 -63.885 -9.018 38.368 1 73.02 ? CG1 AZV 1 B 1 
HETATM 37 C CG2 AZV . . . D 2 -62.131 -7.383 39.117 1 74.26 ? CG2 AZV 1 B 1 
HETATM 38 O OXT AZV . . . D 2 -62.092 -5.2 36.029 1 69.65 ? OXT AZV 1 B 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           268 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           38 
#