data_3Q8Y
#
_model_server_result.job_id            bow7eRU7hQuD118DyfVNSQ 
_model_server_result.datetime_utc      '2024-12-26 16:59:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3q8y 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"S","auth_seq_id":159}' 
#
_entry.id    3Q8Y 
#
_exptl.entry_id    3Q8Y 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              114.939 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'VANADATE ION' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          108.04 
_cell.angle_gamma         90 
_cell.entry_id            3Q8Y 
_cell.length_a            119.91 
_cell.length_b            71.367 
_cell.length_c            160.08 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3Q8Y 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
? monomeric 1 author_defined_assembly 5 
? monomeric 1 author_defined_assembly 6 
? monomeric 1 author_defined_assembly 7 
? monomeric 1 author_defined_assembly 8 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,I,J,AA 1 1 
B,K,L,M,BA 2 1 
C,N,CA 3 1 
D,O,P,Q,DA 4 1 
E,R,S,T,EA 5 1 
F,U,FA 6 1 
G,V,W,GA 7 1 
H,X,Y,Z,HA 8 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 J N N 
? 3 L N N 
? 3 N N N 
? 3 P N N 
? 3 S N N 
? 3 U N N 
? 3 W N N 
? 3 Y N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A ND1 HIS 115 A HIS 115 1_555 J V VO4 . A VO4 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? 
metalc ? metalc2 B ND1 HIS 115 B HIS 115 1_555 L V VO4 . B VO4 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? 
metalc ? metalc3 K O1A ADP . B ADP 158 1_555 M MG MG . B MG 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.733 ? 
metalc ? metalc4 M MG MG . B MG 160 1_555 BA O HOH . B HOH 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.916 ? 
metalc ? metalc5 D ND1 HIS 115 D HIS 115 1_555 P V VO4 . D VO4 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.703 ? 
metalc ? metalc6 O O3' ADP . D ADP 158 1_555 P V VO4 . D VO4 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.628 ? 
metalc ? metalc7 O O1A ADP . D ADP 158 1_555 Q MG MG . D MG 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
metalc ? metalc8 Q MG MG . D MG 160 1_555 DA O HOH . D HOH 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? 
metalc ? metalc9 Q MG MG . D MG 160 1_555 HA O HOH . H HOH 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? 
metalc ? metalc10 E ND1 HIS 115 E HIS 115 1_555 S V VO4 . E VO4 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? 
metalc ? metalc11 R O2B ADP . E ADP 158 1_555 S V VO4 . E VO4 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? 
metalc ? metalc12 R O1A ADP . E ADP 158 1_555 T MG MG . E MG 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? 
metalc ? metalc13 R O2A ADP . E ADP 158 1_555 T MG MG . E MG 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.993 ? 
metalc ? metalc14 G ND1 HIS 115 G HIS 115 1_555 W V VO4 . G VO4 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? 
metalc ? metalc15 H ND1 HIS 115 H HIS 115 1_555 Y V VO4 . H VO4 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? 
metalc ? metalc16 X O3B ADP . H ADP 158 1_555 Y V VO4 . H VO4 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? 
metalc ? metalc17 X O2B ADP . H ADP 158 1_555 Y V VO4 . H VO4 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? 
metalc ? metalc18 X O1A ADP . H ADP 158 1_555 Z MG MG . H MG 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? 
metalc ? metalc19 Z MG MG . H MG 160 1_555 HA O HOH . H HOH 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.989 ? 
#
_chem_comp.formula           'O4 V -3' 
_chem_comp.formula_weight    114.939 
_chem_comp.id                VO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'VANADATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
V O1 VO4 doub 407 n n 
V O2 VO4 sing 408 n n 
V O3 VO4 sing 409 n n 
V O4 VO4 sing 410 n n 
#
_atom_sites.entry_id                     3Q8Y 
_atom_sites.fract_transf_matrix[1][1]    0.00834 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002716 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014012 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00657 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 ADP A 1 158 3 ADP ADP . 
J 3 VO4 A 1 159 2 VO4 VO4 . 
K 2 ADP B 1 158 2 ADP ADP . 
L 3 VO4 B 1 159 1 VO4 VO4 . 
M 4 MG B 1 160 4 MG MG . 
N 3 VO4 C 1 158 3 VO4 VO4 . 
O 2 ADP D 1 158 4 ADP ADP . 
P 3 VO4 D 1 159 4 VO4 VO4 . 
Q 4 MG D 1 160 3 MG MG . 
R 2 ADP E 1 158 5 ADP ADP . 
S 3 VO4 E 1 159 5 VO4 VO4 . 
T 4 MG E 1 160 1 MG MG . 
U 3 VO4 F 1 158 6 VO4 VO4 . 
V 2 ADP G 1 158 1 ADP ADP . 
W 3 VO4 G 1 159 8 VO4 VO4 . 
X 2 ADP H 1 158 6 ADP ADP . 
Y 3 VO4 H 1 159 7 VO4 VO4 . 
Z 4 MG H 1 160 2 MG MG . 
AA 5 HOH A 1 160 17 HOH HOH . 
AA 5 HOH A 2 161 21 HOH HOH . 
AA 5 HOH A 3 162 24 HOH HOH . 
AA 5 HOH A 4 163 29 HOH HOH . 
AA 5 HOH A 5 164 33 HOH HOH . 
AA 5 HOH A 6 165 37 HOH HOH . 
AA 5 HOH A 7 166 63 HOH HOH . 
AA 5 HOH A 8 167 66 HOH HOH . 
AA 5 HOH A 9 168 71 HOH HOH . 
AA 5 HOH A 10 169 78 HOH HOH . 
AA 5 HOH A 11 170 79 HOH HOH . 
AA 5 HOH A 12 171 82 HOH HOH . 
AA 5 HOH A 13 172 99 HOH HOH . 
AA 5 HOH A 14 173 103 HOH HOH . 
AA 5 HOH A 15 174 104 HOH HOH . 
AA 5 HOH A 16 175 117 HOH HOH . 
BA 5 HOH B 1 161 6 HOH HOH . 
BA 5 HOH B 2 162 11 HOH HOH . 
BA 5 HOH B 3 163 12 HOH HOH . 
BA 5 HOH B 4 164 14 HOH HOH . 
BA 5 HOH B 5 165 26 HOH HOH . 
BA 5 HOH B 6 166 36 HOH HOH . 
BA 5 HOH B 7 167 41 HOH HOH . 
BA 5 HOH B 8 168 49 HOH HOH . 
BA 5 HOH B 9 169 53 HOH HOH . 
BA 5 HOH B 10 170 57 HOH HOH . 
BA 5 HOH B 11 171 58 HOH HOH . 
BA 5 HOH B 12 172 74 HOH HOH . 
BA 5 HOH B 13 173 75 HOH HOH . 
BA 5 HOH B 14 174 80 HOH HOH . 
BA 5 HOH B 15 175 88 HOH HOH . 
BA 5 HOH B 16 176 100 HOH HOH . 
BA 5 HOH B 17 177 101 HOH HOH . 
BA 5 HOH B 18 178 107 HOH HOH . 
BA 5 HOH B 19 179 116 HOH HOH . 
BA 5 HOH B 20 180 119 HOH HOH . 
BA 5 HOH B 21 181 120 HOH HOH . 
BA 5 HOH B 22 182 121 HOH HOH . 
CA 5 HOH C 1 159 9 HOH HOH . 
CA 5 HOH C 2 160 19 HOH HOH . 
CA 5 HOH C 3 161 28 HOH HOH . 
CA 5 HOH C 4 162 30 HOH HOH . 
CA 5 HOH C 5 163 44 HOH HOH . 
CA 5 HOH C 6 164 47 HOH HOH . 
CA 5 HOH C 7 165 55 HOH HOH . 
CA 5 HOH C 8 166 62 HOH HOH . 
CA 5 HOH C 9 167 81 HOH HOH . 
CA 5 HOH C 10 168 86 HOH HOH . 
CA 5 HOH C 11 169 91 HOH HOH . 
CA 5 HOH C 12 170 98 HOH HOH . 
DA 5 HOH D 1 161 4 HOH HOH . 
DA 5 HOH D 2 162 7 HOH HOH . 
DA 5 HOH D 3 163 16 HOH HOH . 
DA 5 HOH D 4 164 42 HOH HOH . 
DA 5 HOH D 5 165 52 HOH HOH . 
DA 5 HOH D 6 166 65 HOH HOH . 
DA 5 HOH D 7 167 70 HOH HOH . 
DA 5 HOH D 8 168 73 HOH HOH . 
DA 5 HOH D 9 169 102 HOH HOH . 
DA 5 HOH D 10 170 115 HOH HOH . 
EA 5 HOH E 1 161 2 HOH HOH . 
EA 5 HOH E 2 162 8 HOH HOH . 
EA 5 HOH E 3 163 13 HOH HOH . 
EA 5 HOH E 4 164 27 HOH HOH . 
EA 5 HOH E 5 165 39 HOH HOH . 
EA 5 HOH E 6 166 54 HOH HOH . 
EA 5 HOH E 7 167 56 HOH HOH . 
EA 5 HOH E 8 168 64 HOH HOH . 
EA 5 HOH E 9 169 67 HOH HOH . 
EA 5 HOH E 10 170 87 HOH HOH . 
EA 5 HOH E 11 171 95 HOH HOH . 
EA 5 HOH E 12 172 96 HOH HOH . 
FA 5 HOH F 1 159 5 HOH HOH . 
FA 5 HOH F 2 160 15 HOH HOH . 
FA 5 HOH F 3 161 18 HOH HOH . 
FA 5 HOH F 4 162 22 HOH HOH . 
FA 5 HOH F 5 163 35 HOH HOH . 
FA 5 HOH F 6 164 38 HOH HOH . 
FA 5 HOH F 7 165 45 HOH HOH . 
FA 5 HOH F 8 166 46 HOH HOH . 
FA 5 HOH F 9 167 59 HOH HOH . 
FA 5 HOH F 10 168 60 HOH HOH . 
FA 5 HOH F 11 169 72 HOH HOH . 
FA 5 HOH F 12 170 85 HOH HOH . 
GA 5 HOH G 1 160 10 HOH HOH . 
GA 5 HOH G 2 161 34 HOH HOH . 
GA 5 HOH G 3 162 50 HOH HOH . 
GA 5 HOH G 4 163 61 HOH HOH . 
GA 5 HOH G 5 164 68 HOH HOH . 
GA 5 HOH G 6 165 76 HOH HOH . 
GA 5 HOH G 7 166 77 HOH HOH . 
GA 5 HOH G 8 167 84 HOH HOH . 
GA 5 HOH G 9 168 89 HOH HOH . 
GA 5 HOH G 10 169 90 HOH HOH . 
GA 5 HOH G 11 170 92 HOH HOH . 
GA 5 HOH G 12 171 93 HOH HOH . 
GA 5 HOH G 13 172 94 HOH HOH . 
GA 5 HOH G 14 173 97 HOH HOH . 
GA 5 HOH G 15 174 108 HOH HOH . 
HA 5 HOH H 1 161 1 HOH HOH . 
HA 5 HOH H 2 162 3 HOH HOH . 
HA 5 HOH H 3 163 20 HOH HOH . 
HA 5 HOH H 4 164 23 HOH HOH . 
HA 5 HOH H 5 165 25 HOH HOH . 
HA 5 HOH H 6 166 31 HOH HOH . 
HA 5 HOH H 7 167 32 HOH HOH . 
HA 5 HOH H 8 168 40 HOH HOH . 
HA 5 HOH H 9 169 43 HOH HOH . 
HA 5 HOH H 10 170 48 HOH HOH . 
HA 5 HOH H 11 171 51 HOH HOH . 
HA 5 HOH H 12 172 69 HOH HOH . 
HA 5 HOH H 13 173 83 HOH HOH . 
HA 5 HOH H 14 174 105 HOH HOH . 
HA 5 HOH H 15 175 106 HOH HOH . 
HA 5 HOH H 16 176 110 HOH HOH . 
HA 5 HOH H 17 177 111 HOH HOH . 
HA 5 HOH H 18 178 112 HOH HOH . 
HA 5 HOH H 19 179 113 HOH HOH . 
HA 5 HOH H 20 180 114 HOH HOH . 
HA 5 HOH H 21 181 118 HOH HOH . 
HA 5 HOH H 22 182 122 HOH HOH . 
HA 5 HOH H 23 183 123 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 V V VO4 . . . S 3 -14.038 -20.949 -53.219 1 83.18 ? V VO4 159 E 1 
HETATM 2 O O1 VO4 . . . S 3 -14.14 -21.169 -51.315 1 82.69 ? O1 VO4 159 E 1 
HETATM 3 O O2 VO4 . . . S 3 -12.263 -21.482 -53.705 1 84.34 ? O2 VO4 159 E 1 
HETATM 4 O O3 VO4 . . . S 3 -14.168 -19.152 -53.85 1 83.2 ? O3 VO4 159 E 1 
HETATM 5 O O4 VO4 . . . S 3 -15.406 -21.989 -54.065 1 83.4 ? O4 VO4 159 E 1 
#
_model_server_stats.io_time_ms              24 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    43 
_model_server_stats.query_time_ms           333 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           5 
#