data_3Q9G # _model_server_result.job_id 0nI1VjjcxuctrO-jI0td7A _model_server_result.datetime_utc '2025-02-27 02:27:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3q9g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":11}' # _entry.id 3Q9G # _exptl.entry_id 3Q9G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3Q9G _cell.length_a 32.867 _cell.length_b 32.867 _cell.length_c 55.413 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3Q9G _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_635 y+3/2,x-3/2,-z+1/2 0 1 0 1 0 0 0 0 -1 49.3005 -49.3005 27.7065 3 'crystal symmetry operation' 10_745 -x+2,-y-1,z -1 0 0 0 -1 0 0 0 1 65.734 -32.867 0 4 'crystal symmetry operation' 16_555 -y+1/2,-x+1/2,-z+1/2 0 -1 0 -1 0 0 0 0 -1 16.4335 16.4335 27.7065 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A N VAL 1 A VAL 1 1_555 A C ORN 10 A ORN 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.273 ? covale ? covale2 A C VAL 4 A VAL 4 1_555 A N 4BF 5 A 4BF 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale3 A C 4BF 5 A 4BF 5 1_555 A NE ORN 6 A ORN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.268 ? covale ? covale4 A C ORN 6 A ORN 6 1_555 A N HAO 7 A HAO 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.353 ? covale ? covale5 A C HAO 7 A HAO 7 1_555 A N LYS 8 A LYS 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.248 ? covale ? covale6 A C LEU 9 A LEU 9 1_555 A NE ORN 10 A ORN 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.278 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 50 n n C1 C2 GOL sing 51 n n C1 H11 GOL sing 52 n n C1 H12 GOL sing 53 n n O1 HO1 GOL sing 54 n n C2 O2 GOL sing 55 n n C2 C3 GOL sing 56 n n C2 H2 GOL sing 57 n n O2 HO2 GOL sing 58 n n C3 O3 GOL sing 59 n n C3 H31 GOL sing 60 n n C3 H32 GOL sing 61 n n O3 HO3 GOL sing 62 n n # _atom_sites.entry_id 3Q9G _atom_sites.fract_transf_matrix[1][1] 0.030426 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.030426 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018046 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 11 1 GOL GOL . C 3 ACY A 1 12 1 ACY ACY . D 4 HOH A 1 13 13 HOH HOH . D 4 HOH A 2 14 14 HOH HOH . D 4 HOH A 3 15 1 HOH HOH . D 4 HOH A 4 16 2 HOH HOH . D 4 HOH A 5 17 5 HOH HOH . D 4 HOH A 6 18 6 HOH HOH . D 4 HOH A 7 19 7 HOH HOH . D 4 HOH A 8 20 8 HOH HOH . D 4 HOH A 9 21 9 HOH HOH . D 4 HOH A 10 22 10 HOH HOH . D 4 HOH A 11 23 11 HOH HOH . D 4 HOH A 12 24 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 28.248 -18.681 26.423 1 38.5 ? C1 GOL 11 A 1 HETATM 2 O O1 GOL . . . B 2 29.039 -19.319 25.445 1 39.86 ? O1 GOL 11 A 1 HETATM 3 C C2 GOL . . . B 2 27.896 -17.267 25.98 1 38.97 ? C2 GOL 11 A 1 HETATM 4 O O2 GOL . . . B 2 29.054 -16.615 25.499 1 38.61 ? O2 GOL 11 A 1 HETATM 5 C C3 GOL . . . B 2 27.443 -16.488 27.179 1 39.19 ? C3 GOL 11 A 1 HETATM 6 O O3 GOL . . . B 2 28.582 -16.328 28 1 41.36 ? O3 GOL 11 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #