data_3Q9H # _model_server_result.job_id nUkpu9war5rljH_5LrPZjQ _model_server_result.datetime_utc '2025-01-04 07:32:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3q9h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":16}' # _entry.id 3Q9H # _exptl.entry_id 3Q9H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 90.121 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,4-BUTANEDIOL _entity.pdbx_number_of_molecules 11 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3Q9H _cell.length_a 57.86 _cell.length_b 57.86 _cell.length_c 129.738 _cell.Z_PDB 64 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3Q9H _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 ? tetrameric 4 author_defined_assembly 2 ? tetrameric 4 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,I,J,K,L,M,N,O,EA,FA,GA,HA 1 1 A,B,E,F,I,J,K,L,P,Q,R,S,T,EA,FA,IA,JA 2 1 C,D,G,H,M,N,O,U,V,W,X,Y,Z,AA,BA,CA,DA,GA,HA,KA,LA 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 K N N ? 4 M N N ? 4 R N N ? 4 S N N ? 4 T N N ? 4 V N N ? 4 W N N ? 4 X N N ? 4 AA N N ? 4 BA N N ? 4 CA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A N LEU 1 A LEU 1 1_555 A C ORN 10 A ORN 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale2 A C ALA 5 A ALA 5 1_555 A NE ORN 6 A ORN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? covale ? covale3 A C ORN 6 A ORN 6 1_555 A N HAO 7 A HAO 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale4 A C HAO 7 A HAO 7 1_555 A N LEU 8 A LEU 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? covale ? covale5 A C LYS 9 A LYS 9 1_555 A NE ORN 10 A ORN 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale6 B N LEU 1 B LEU 1 1_555 B C ORN 10 B ORN 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.286 ? covale ? covale7 B C ALA 5 B ALA 5 1_555 B NE ORN 6 B ORN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale8 B C ORN 6 B ORN 6 1_555 B N HAO 7 B HAO 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale9 B C HAO 7 B HAO 7 1_555 B N LEU 8 B LEU 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.296 ? covale ? covale10 B C LYS 9 B LYS 9 1_555 B NE ORN 10 B ORN 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale11 C N LEU 1 C LEU 1 1_555 C C ORN 10 C ORN 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale12 C C ALA 5 C ALA 5 1_555 C NE ORN 6 C ORN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale13 C C ORN 6 C ORN 6 1_555 C N HAO 7 C HAO 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale14 C C HAO 7 C HAO 7 1_555 C N LEU 8 C LEU 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.302 ? covale ? covale15 C C LYS 9 C LYS 9 1_555 C NE ORN 10 C ORN 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale16 D N LEU 1 D LEU 1 1_555 D C ORN 10 D ORN 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.295 ? covale ? covale17 D C ALA 5 D ALA 5 1_555 D NE ORN 6 D ORN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale18 D C ORN 6 D ORN 6 1_555 D N HAO 7 D HAO 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale19 D C HAO 7 D HAO 7 1_555 D N LEU 8 D LEU 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.302 ? covale ? covale20 D C LYS 9 D LYS 9 1_555 D NE ORN 10 D ORN 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? covale ? covale21 E N LEU 1 E LEU 1 1_555 E C ORN 10 E ORN 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.292 ? covale ? covale22 E C ALA 5 E ALA 5 1_555 E NE ORN 6 E ORN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.353 ? covale ? covale23 E C ORN 6 E ORN 6 1_555 E N HAO 7 E HAO 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.301 ? covale ? covale24 E C HAO 7 E HAO 7 1_555 E N LEU 8 E LEU 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale25 E C LYS 9 E LYS 9 1_555 E NE ORN 10 E ORN 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.358 ? covale ? covale26 F N LEU 1 F LEU 1 1_555 F C ORN 10 F ORN 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale27 F C ALA 5 F ALA 5 1_555 F NE ORN 6 F ORN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale28 F C ORN 6 F ORN 6 1_555 F N HAO 7 F HAO 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.283 ? covale ? covale29 F C HAO 7 F HAO 7 1_555 F N LEU 8 F LEU 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.292 ? covale ? covale30 F C LYS 9 F LYS 9 1_555 F NE ORN 10 F ORN 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale31 G N LEU 1 G LEU 1 1_555 G C ORN 10 G ORN 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.302 ? covale ? covale32 G C ALA 5 G ALA 5 1_555 G NE ORN 6 G ORN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.353 ? covale ? covale33 G C ORN 6 G ORN 6 1_555 G N HAO 7 G HAO 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.313 ? covale ? covale34 G C HAO 7 G HAO 7 1_555 G N LEU 8 G LEU 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.31 ? covale ? covale35 G C LYS 9 G LYS 9 1_555 G NE ORN 10 G ORN 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale36 H N LEU 1 H LEU 1 1_555 H C ORN 10 H ORN 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.313 ? covale ? covale37 H C ALA 5 H ALA 5 1_555 H NE ORN 6 H ORN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.358 ? covale ? covale38 H C ORN 6 H ORN 6 1_555 H N HAO 7 H HAO 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.298 ? covale ? covale39 H C HAO 7 H HAO 7 1_555 H N LEU 8 H LEU 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.303 ? covale ? covale40 H C LYS 9 H LYS 9 1_555 H NE ORN 10 H ORN 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? # _chem_comp.formula 'C4 H10 O2' _chem_comp.formula_weight 90.121 _chem_comp.id BU1 _chem_comp.mon_nstd_flag . _chem_comp.name 1,4-BUTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BU1 sing 13 n n C1 O5 BU1 sing 14 n n C1 H11 BU1 sing 15 n n C1 H12 BU1 sing 16 n n C2 C3 BU1 sing 17 n n C2 H21 BU1 sing 18 n n C2 H22 BU1 sing 19 n n C3 C4 BU1 sing 20 n n C3 H31 BU1 sing 21 n n C3 H32 BU1 sing 22 n n C4 O6 BU1 sing 23 n n C4 H41 BU1 sing 24 n n C4 H42 BU1 sing 25 n n O5 HO5 BU1 sing 26 n n O6 HO6 BU1 sing 27 n n # _atom_sites.entry_id 3Q9H _atom_sites.fract_transf_matrix[1][1] 0.017283 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017283 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007708 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 SO4 A 1 11 4 SO4 SO4 . J 3 GOL B 1 11 7 GOL GOL . K 4 BU1 B 1 12 9 BU1 BU1 . L 3 GOL B 1 23 23 GOL GOL . M 4 BU1 C 1 18 18 BU1 BU1 . N 3 GOL C 1 22 22 GOL GOL . O 3 GOL D 1 11 8 GOL GOL . P 2 SO4 E 1 11 2 SO4 SO4 . Q 2 SO4 E 1 12 3 SO4 SO4 . R 4 BU1 E 1 16 16 BU1 BU1 . S 4 BU1 F 1 13 13 BU1 BU1 . T 4 BU1 F 1 17 17 BU1 BU1 . U 2 SO4 G 1 11 5 SO4 SO4 . V 4 BU1 G 1 12 12 BU1 BU1 . W 4 BU1 G 1 14 14 BU1 BU1 . X 4 BU1 G 1 19 19 BU1 BU1 . Y 2 SO4 H 1 11 1 SO4 SO4 . Z 2 SO4 H 1 12 6 SO4 SO4 . AA 4 BU1 H 1 13 10 BU1 BU1 . BA 4 BU1 H 1 15 15 BU1 BU1 . CA 4 BU1 H 1 20 20 BU1 BU1 . DA 3 GOL H 1 21 21 GOL GOL . EA 5 HOH A 1 12 6 HOH HOH . EA 5 HOH A 2 15 15 HOH HOH . EA 5 HOH A 3 19 19 HOH HOH . EA 5 HOH A 4 30 30 HOH HOH . FA 5 HOH B 1 13 10 HOH HOH . FA 5 HOH B 2 14 11 HOH HOH . GA 5 HOH C 1 11 3 HOH HOH . GA 5 HOH C 2 25 25 HOH HOH . GA 5 HOH C 3 26 26 HOH HOH . HA 5 HOH D 1 22 22 HOH HOH . HA 5 HOH D 2 29 29 HOH HOH . HA 5 HOH D 3 33 33 HOH HOH . HA 5 HOH D 4 34 34 HOH HOH . IA 5 HOH E 1 13 13 HOH HOH . IA 5 HOH E 2 14 14 HOH HOH . IA 5 HOH E 3 15 12 HOH HOH . IA 5 HOH E 4 17 16 HOH HOH . IA 5 HOH E 5 27 27 HOH HOH . IA 5 HOH E 6 31 31 HOH HOH . JA 5 HOH F 1 11 8 HOH HOH . KA 5 HOH G 1 13 1 HOH HOH . KA 5 HOH G 2 17 17 HOH HOH . KA 5 HOH G 3 28 28 HOH HOH . LA 5 HOH H 1 14 4 HOH HOH . LA 5 HOH H 2 16 7 HOH HOH . LA 5 HOH H 3 17 20 HOH HOH . LA 5 HOH H 4 18 18 HOH HOH . LA 5 HOH H 5 23 23 HOH HOH . LA 5 HOH H 6 24 24 HOH HOH . LA 5 HOH H 7 32 32 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BU1 . . . R 4 -7.424 2.385 15.93 1 76.49 ? C1 BU1 16 E 1 HETATM 2 C C2 BU1 . . . R 4 -6.191 3.218 16.276 1 79.66 ? C2 BU1 16 E 1 HETATM 3 C C3 BU1 . . . R 4 -5.674 4.017 15.08 1 78.34 ? C3 BU1 16 E 1 HETATM 4 C C4 BU1 . . . R 4 -6.719 4.989 14.536 1 75.37 ? C4 BU1 16 E 1 HETATM 5 O O5 BU1 . . . R 4 -8.368 2.398 17.014 1 75.1 ? O5 BU1 16 E 1 HETATM 6 O O6 BU1 . . . R 4 -6.545 6.299 15.1 1 71.46 ? O6 BU1 16 E 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #